Guide to the Human Genome
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Name: LOC100291259 Sequence: fasta or formatted (311aa) NCBI GI: 239752252
Description:

PREDICTED: hypothetical protein XP_002348181

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         30           3
 C cysteine            4.2         13           1
 D aspartate           2.9          9           1
 E glutamate           6.1         19           2
 F phenylalanine       1.9          6           1
 G glycine            10.6         33           2
 H histidine           3.5         11           2
 I isoleucine          0.6          2           1
 K lysine              1.0          3           1
 L leucine            12.2         38           2
 M methionine          1.3          4           1
 N asparagine          0.3          1           1
 P proline             8.4         26           2
 Q glutamine           5.5         17           2
 R arginine            9.0         28           2
 S serine              7.7         24           2
 T threonine           3.5         11           1
 V valine             10.0         31           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348181 
ZC3H3                 0.023   zinc finger CCCH-type containing 3 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
INSM2                 0.020   insulinoma-associated protein IA-6 
LOC100294019          0.018   PREDICTED: hypothetical protein 
LOC100290802          0.018   PREDICTED: hypothetical protein XP_002346570 
LOC100288818          0.018   PREDICTED: hypothetical protein XP_002342098 
IER5L                 0.018   immediate early response 5-like 
FUSSEL18              0.016   PREDICTED: functional smad suppressing element 18 [...
LOC100130431          0.016   PREDICTED: hypothetical protein 
FUSSEL18              0.016   PREDICTED: functional smad suppressing element 18 [...
LOC100130431          0.016   PREDICTED: hypothetical protein 
LRRC38                0.016   PREDICTED: leucine rich repeat containing 38 
FUSSEL18              0.016   PREDICTED: functional smad suppressing element 18 [...
LRRC38                0.016   PREDICTED: leucine rich repeat containing 38 
KAT2A                 0.016   general control of amino acid synthesis 5-like 2 [H...
KIF12                 0.016   kinesin family member 12 
POM121L2              0.015   POM121 membrane glycoprotein-like 2 
LRFN1                 0.015   leucine rich repeat and fibronectin type III domain...
RIMBP3B               0.015   RIMS binding protein 3B 
RIMBP3C               0.015   RIMS binding protein 3C 
LOC100130431          0.015   PREDICTED: hypothetical protein 
EPHA6                 0.015   EPH receptor A6 isoform a 
VAX1                  0.015   ventral anterior homeobox 1 isoform a 
MXRA7                 0.015   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.015   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.015   transmembrane anchor protein 1 isoform 1 
SH2B3                 0.013   SH2B adaptor protein 3 
NKX1-1                0.013   PREDICTED: NK1 homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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