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Search of human proteins with 57165364
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo sa... 261 7e-71
gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo sa... 248 1e-66
gi|194306537 gametocyte specific factor 1 [Homo sapiens] 74 2e-14
gi|71143123 U11/U12 snRNP 48K [Homo sapiens] 37 0.004
gi|93004078 2-hydroxyphytanoyl-CoA lyase [Homo sapiens] 31 0.27
gi|214010216 SMC6 protein [Homo sapiens] 30 0.35
gi|13375848 SMC6 protein [Homo sapiens] 30 0.35
gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo... 30 0.60
gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo... 30 0.60
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 28 1.3
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 28 1.3
gi|8923735 family with sequence similarity 48, member A isoform ... 28 1.8
gi|98961135 family with sequence similarity 48, member A isoform... 28 1.8
gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 28 2.3
gi|189242612 complement component 6 precursor [Homo sapiens] 28 2.3
gi|169636415 complement component 6 precursor [Homo sapiens] 28 2.3
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 28 2.3
gi|116805330 small conductance calcium-activated potassium chann... 27 3.0
gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] 27 3.0
gi|155722990 solute carrier family 4 (anion exchanger), member 1... 27 3.0
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens] 27 3.9
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens] 27 3.9
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 27 3.9
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 27 3.9
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 27 3.9
gi|126116565 MYC binding protein 2 [Homo sapiens] 27 3.9
gi|47419936 SFRS protein kinase 1 [Homo sapiens] 27 3.9
gi|209693439 synuclein, gamma (breast cancer-specific protein 1)... 27 5.1
gi|226493203 coiled-coil domain containing 76 [Homo sapiens] 27 5.1
gi|148613884 netrin 1 [Homo sapiens] 26 6.7
>gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo
sapiens]
Length = 123
Score = 261 bits (668), Expect = 7e-71
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQTFFPQKVVCENDTKESARETSPQKILR 120
AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQTFFPQKVVCENDTKESARETSPQKILR
Sbjct: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQTFFPQKVVCENDTKESARETSPQKILR 120
Query: 121 PGQ 123
PGQ
Sbjct: 121 PGQ 123
>gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo
sapiens]
Length = 148
Score = 248 bits (632), Expect = 1e-66
Identities = 123/148 (83%), Positives = 123/148 (83%), Gaps = 25/148 (16%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ-------------------------TF 95
AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ TF
Sbjct: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVDGANCQHVFVLKTF 120
Query: 96 FPQKVVCENDTKESARETSPQKILRPGQ 123
FPQKVVCENDTKESARETSPQKILRPGQ
Sbjct: 121 FPQKVVCENDTKESARETSPQKILRPGQ 148
>gi|194306537 gametocyte specific factor 1 [Homo sapiens]
Length = 167
Score = 74.3 bits (181), Expect = 2e-14
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
++PE CPYD +H+I RF YHL CR+ +P A K+ATC +NA H VP + H
Sbjct: 9 LDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHI 68
Query: 61 AVCVNRSAVEEE 72
+ C +RS +E++
Sbjct: 69 SSCDDRSCIEQD 80
>gi|71143123 U11/U12 snRNP 48K [Homo sapiens]
Length = 339
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 2 EPEAFE----ICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYN 46
E EA E ICPYD +H +P S H+ASCR + K+ YN
Sbjct: 47 EEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYN 95
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 39 KMATCKYNACHVVPIKNLEEHEAVC----VNRSAVEEEDTENP----LKVSPPSSEQNDD 90
++ C Y++ H +P +L +H A C + + EE++ NP V PS N D
Sbjct: 54 EVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYENVKIPSITLNKD 113
Query: 91 TQ 92
+Q
Sbjct: 114 SQ 115
>gi|93004078 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
Length = 578
Score = 30.8 bits (68), Expect = 0.27
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 77 PLKVSPPSSEQNDDTQQTF--FPQKVVCENDTKESARETSPQKI 118
PL V SSE+N +T F FPQ C TK SAR +S + I
Sbjct: 104 PLLVIGGSSERNQETMGAFQEFPQVEACRLYTKFSARPSSIEAI 147
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 30.4 bits (67), Expect = 0.35
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEED 73
H+ L R Q H + K K N + ++N+EEH++V + E ++
Sbjct: 698 HNEELLKRCQLHYKELKMKIRK----------NISEIRELENIEEHQSVDIATLEDEAQE 747
Query: 74 TENPLKVSPPSSEQNDDTQQTFFPQKVVCEN 104
++ +K+ EQ + + K+ EN
Sbjct: 748 NKSKMKMVEEHMEQQKENMEHLKSLKIEAEN 778
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 30.4 bits (67), Expect = 0.35
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEED 73
H+ L R Q H + K K N + ++N+EEH++V + E ++
Sbjct: 698 HNEELLKRCQLHYKELKMKIRK----------NISEIRELENIEEHQSVDIATLEDEAQE 747
Query: 74 TENPLKVSPPSSEQNDDTQQTFFPQKVVCEN 104
++ +K+ EQ + + K+ EN
Sbjct: 748 NKSKMKMVEEHMEQQKENMEHLKSLKIEAEN 778
>gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo
sapiens]
Length = 581
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 19 LSRFQYHLASCRRKNPKKAKKMATCKYNACHVVP-IKNLEEHEAVCVNRSAVEEEDTENP 77
L Q HL + + KK ++ K + V ++NL+E E+ C +R +D+E P
Sbjct: 432 LQGMQQHLLKVQEEYKKKEAELEKLKDDKLQVEKMLENLKEKES-CASRLCASNQDSEYP 490
Query: 78 LKVSPPSS 85
L+ + SS
Sbjct: 491 LEKTMNSS 498
>gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo
sapiens]
Length = 610
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 19 LSRFQYHLASCRRKNPKKAKKMATCKYNACHVVP-IKNLEEHEAVCVNRSAVEEEDTENP 77
L Q HL + + KK ++ K + V ++NL+E E+ C +R +D+E P
Sbjct: 461 LQGMQQHLLKVQEEYKKKEAELEKLKDDKLQVEKMLENLKEKES-CASRLCASNQDSEYP 519
Query: 78 LKVSPPSS 85
L+ + SS
Sbjct: 520 LEKTMNSS 527
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 79 KVSPPSSEQNDDTQQTFFPQKVV--CENDTKESARETS 114
K P SSE D+ FF ++ V C NDTKE +++ S
Sbjct: 1427 KAQPSSSE--DELDNVFFKKENVEQCHNDTKEESKKES 1462
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 72 EDTENPLKVSPPSSEQNDDTQQTFFPQKVVCENDTKES 109
ED ENP + P + DT+Q P++ V E+ +ES
Sbjct: 1615 EDAENPTESEKPDTSAESDTEQN--PERKVEEDGAEES 1650
>gi|8923735 family with sequence similarity 48, member A isoform b
[Homo sapiens]
Length = 733
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 32 KNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDT 91
K P K ++ + V P K ++ E V V S + + P + PSS N +
Sbjct: 419 KCPVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSS 478
Query: 92 QQTFFPQK 99
F PQ+
Sbjct: 479 GNYFTPQQ 486
>gi|98961135 family with sequence similarity 48, member A isoform a
[Homo sapiens]
Length = 779
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 32 KNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDT 91
K P K ++ + V P K ++ E V V S + + P + PSS N +
Sbjct: 418 KCPVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSS 477
Query: 92 QQTFFPQK 99
F PQ+
Sbjct: 478 GNYFTPQQ 485
>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 714
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Query: 10 PYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAV 69
P P +PL + H+ + P++ + + P + + + +RS
Sbjct: 438 PKRPQWTVPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQEGSP-ERAQGMATLVFSRSCK 496
Query: 70 EEEDTENPLKVSPPSSEQNDDTQQTFFPQKVVCENDTKESARETSPQK 117
EE E P S + + PQ++V + D + ++E SP++
Sbjct: 497 PEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQEGSPER 544
>gi|189242612 complement component 6 precursor [Homo sapiens]
Length = 934
Score = 27.7 bits (60), Expect = 2.3
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 27 ASCRRKNPKKAKKMATCKYNACHVVPIKN-----LEEHEAVCVNRSAVEEEDTENPLKVS 81
A +R N +KA + K++ C P N L E +CV +S E+ E K S
Sbjct: 500 AVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCE---KQS 556
Query: 82 PPSSEQNDDTQQTFFPQKVVCENDTKES 109
P D Q + C+ K S
Sbjct: 557 PDYKSNAVDGQWGCWSSWSTCDATYKRS 584
>gi|169636415 complement component 6 precursor [Homo sapiens]
Length = 934
Score = 27.7 bits (60), Expect = 2.3
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 27 ASCRRKNPKKAKKMATCKYNACHVVPIKN-----LEEHEAVCVNRSAVEEEDTENPLKVS 81
A +R N +KA + K++ C P N L E +CV +S E+ E K S
Sbjct: 500 AVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCE---KQS 556
Query: 82 PPSSEQNDDTQQTFFPQKVVCENDTKES 109
P D Q + C+ K S
Sbjct: 557 PDYKSNAVDGQWGCWSSWSTCDATYKRS 584
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 27.7 bits (60), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 64 VNRSAVEEEDTENPLKVSPPSSEQNDDTQQTFFPQ 98
+ +S E E+T +PL++ P E D +FPQ
Sbjct: 516 IPQSPPEGENTHSPLQIVPSLPEWEDSLSPHYFPQ 550
Score = 26.6 bits (57), Expect = 5.1
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 66 RSAVEEEDTENPLKVSPPSSEQNDDT 91
+S E ED+++PL++ P SS ++DDT
Sbjct: 23 QSCPEGEDSQSPLQI-PQSSPESDDT 47
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 27.3 bits (59), Expect = 3.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 30 RRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSS 85
R NP M++CKY+ + P+ L R+ +E E PL++ PS+
Sbjct: 165 RDSNPFTEIAMSSCKYSGGVMKPLSRLS-----ASRRNLIEAETEGQPLQLFSPSN 215
>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 3.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 8 ICPYDPHHRIPLSRFQYHLASCRRK-----NP--KKAKKMATCKYNACHVVPIKNLEEHE 60
IC P +R P R Y C RK NP + +K V P++N ++ +
Sbjct: 13 ICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDD 72
Query: 61 AVCVNRSAVEEED 73
++ ++ EEED
Sbjct: 73 SIADFLNSDEEED 85
>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Homo sapiens]
Length = 796
Score = 27.3 bits (59), Expect = 3.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTE 75
KK + M C AC ++ L EAV R A ED +
Sbjct: 422 KKKEAMIQCSLEACRILDTLGLLRQEAVSRKRKAKNWEDED 462
>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
Length = 1111
Score = 26.9 bits (58), Expect = 3.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 53 IKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ 93
+KNL E + NR A EE + +S S+ +D TQQ
Sbjct: 952 LKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQ 992
>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
Length = 1193
Score = 26.9 bits (58), Expect = 3.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 53 IKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQ 93
+KNL E + NR A EE + +S S+ +D TQQ
Sbjct: 952 LKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQ 992
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 177 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 224
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 203 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 250
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 35 KKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSP 82
+KAKK+ C V + LE H +++ VE + P+K P
Sbjct: 279 EKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 326
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 26.9 bits (58), Expect = 3.9
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 14 HHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEE---HEAVCVNRSAVE 70
HH L + + RK+ + M + C+V+ +L + H + + VE
Sbjct: 3512 HH--DLEGLEIAMKQALRKSACRVFAMEAFNWLLCNVIQTTSLHDILWHFVASLTPAPVE 3569
Query: 71 ---EEDTENPLKVSPPSSEQNDDTQ 92
EED EN K S +SEQ DT+
Sbjct: 3570 PEEEEDEEN--KTSKENSEQEKDTR 3592
>gi|47419936 SFRS protein kinase 1 [Homo sapiens]
Length = 655
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 65 NRSAVEEEDTENPLKVSPPS--SEQNDDTQQTFFPQKVVCENDTKESARE 112
N+ E E PLK +PP+ +++ + T + + E DT+ A E
Sbjct: 304 NKQEESESPVERPLKENPPNKMTQEKLEESSTIGQDQTLMERDTEGGAAE 353
>gi|209693439 synuclein, gamma (breast cancer-specific protein 1)
[Homo sapiens]
Length = 127
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 26 LASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSS 85
+ S K ++A ++ ++ + V K +EE E + V V +ED L+ S P
Sbjct: 52 VTSVAEKTKEQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKED----LRPSAPQQ 107
Query: 86 E 86
E
Sbjct: 108 E 108
>gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
Length = 481
Score = 26.6 bits (57), Expect = 5.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 8 ICPYDPHHRIPLSRFQYHLASCR-RKNPK 35
+CP DP H + + HL C R+ PK
Sbjct: 58 LCPLDPKHTVYEDQLAKHLKKCNSREKPK 86
>gi|148613884 netrin 1 [Homo sapiens]
Length = 604
Score = 26.2 bits (56), Expect = 6.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 22 FQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHEAVCVN 65
FQ++ CR+ YN H PI E EAVC +
Sbjct: 174 FQFYSTQCRKM------------YNRPHRAPITKQNEQEAVCTD 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,615,145
Number of Sequences: 37866
Number of extensions: 231569
Number of successful extensions: 623
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 59
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.