Guide to the Human Genome
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Name: FAM48A Sequence: fasta or formatted (733aa) NCBI GI: 8923735
Description:

family with sequence similarity 48, member A isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {779aa} family with sequence similarity 48, member A isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         47           3
 C cysteine            2.3         17           1
 D aspartate           3.8         28           2
 E glutamate           5.3         39           2
 F phenylalanine       1.8         13           1
 G glycine             5.6         41           2
 H histidine           1.5         11           1
 I isoleucine          3.7         27           2
 K lysine              6.1         45           2
 L leucine            10.4         76           3
 M methionine          2.2         16           1
 N asparagine          4.5         33           1
 P proline             7.1         52           4
 Q glutamine           8.3         61           6
 R arginine            4.0         29           2
 S serine             13.2         97           4
 T threonine           4.9         36           2
 V valine              5.3         39           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 48, member A isoform ... 
FAM48A                0.958   family with sequence similarity 48, member A isoform...
FAM48B1               0.475   hypothetical protein LOC100130302 
FAM48B2               0.472   family with sequence similarity 48, member B2 [Homo...
LOC100294444          0.417   PREDICTED: similar to family with sequence similari...
ZFHX3                 0.014   AT-binding transcription factor 1 
TNRC18                0.014   trinucleotide repeat containing 18 
MUC6                  0.013   mucin 6, gastric 
ZNF532                0.013   zinc finger protein 532 
MEF2A                 0.013   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.013   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.013   myocyte enhancer factor 2A isoform 1 
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.013   nuclear factor of activated T-cells 5 isoform a [Hom...
EP400                 0.012   E1A binding protein p400 
DOT1L                 0.012   DOT1-like, histone H3 methyltransferase 
MUC5AC                0.012   mucin 5AC 
CREBBP                0.012   CREB binding protein isoform b 
CREBBP                0.012   CREB binding protein isoform a 
MUC5B                 0.012   mucin 5, subtype B, tracheobronchial 
BCL9                  0.012   B-cell CLL/lymphoma 9 
POU2F1                0.011   POU class 2 homeobox 1 
MED15                 0.010   mediator complex subunit 15 isoform b 
MUC17                 0.010   mucin 17 
MUC3B                 0.010   PREDICTED: mucin 3B, cell surface associated, parti...
MEF2D                 0.010   myocyte enhancer factor 2D 
HCFC1                 0.010   host cell factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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