SNRNP48 35171

Name: SNRNP48	Sequence: fasta or formatted (339aa)		NCBI GI: 71143123
Description: U11/U12 snRNP 48K		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 17 2 C cysteine 2.1 7 1 D aspartate 8.0 27 2 E glutamate 12.1 41 3 F phenylalanine 2.1 7 2 G glycine 2.7 9 2 H histidine 3.5 12 2 I isoleucine 4.1 14 2 K lysine 8.8 30 3 L leucine 5.9 20 1 M methionine 1.8 6 1 N asparagine 4.7 16 1 P proline 3.5 12 3 Q glutamine 3.8 13 1 R arginine 10.3 35 3 S serine 9.1 31 2 T threonine 2.7 9 1 V valine 5.6 19 2 W tryptophan 0.6 2 1 Y tyrosine 3.5 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 U11/U12 snRNP 48K PRPF38B 0.036 PRP38 pre-mRNA processing factor 38 (yeast) domain ... CDC2L1 0.035 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.035 cell division cycle 2-like 1 (PITSLRE proteins) isof... RBM25 0.035 RNA binding motif protein 25 CROP 0.035 cisplatin resistance-associated overexpressed protei... CROP 0.035 cisplatin resistance-associated overexpressed protei... LOC100286959 0.033 PREDICTED: hypothetical protein XP_002343921 ANKRD11 0.033 ankyrin repeat domain 11 LOC100133599 0.032 PREDICTED: hypothetical protein LOC100288837 0.030 PREDICTED: hypothetical protein XP_002343931, parti... SNRNP70 0.030 U1 small nuclear ribonucleoprotein 70 kDa LOC100134067 0.030 PREDICTED: hypothetical protein LOC100131202 0.030 PREDICTED: hypothetical protein SFRS12 0.030 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.030 splicing factor, arginine/serine-rich 12 isoform b [... CDC2L2 0.029 cell division cycle 2-like 2 isoform 1 SFRS15 0.029 splicing factor, arginine/serine-rich 15 isoform 3 ... SFRS15 0.029 splicing factor, arginine/serine-rich 15 isoform 2 ... SFRS15 0.029 splicing factor, arginine/serine-rich 15 isoform 1 [... CDC2L1 0.027 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.027 cell division cycle 2-like 1 (PITSLRE proteins) isof... RSRC2 0.027 arginine/serine-rich coiled-coil 2 isoform a CDC2L2 0.027 cell division cycle 2-like 2 isoform 4 TRA2B 0.026 splicing factor, arginine/serine-rich 10 LUC7L 0.026 LUC7-like isoform a PAF1 0.026 Paf1, RNA polymerase II associated factor, homolog [... SON 0.026 SON DNA-binding protein isoform F SON 0.026 SON DNA-binding protein isoform B LUC7L 0.026 LUC7-like isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.