Guide to the Human Genome
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Name: GTSF1L Sequence: fasta or formatted (148aa) NCBI GI: 31088934
Description:

gametocyte specific factor 1-like isoform 1

Referenced in:

Ovary, Uterus and Placenta
Testes and Sperm

Other entries for this name:
alt prot [123aa] gametocyte specific factor 1-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          9           1
 C cysteine            5.4          8           1
 D aspartate           4.7          7           2
 E glutamate           9.5         14           3
 F phenylalanine       3.4          5           2
 G glycine             1.4          2           1
 H histidine           4.1          6           2
 I isoleucine          3.4          5           1
 K lysine              8.1         12           2
 L leucine             4.7          7           1
 M methionine          1.4          2           1
 N asparagine          6.1          9           1
 P proline            10.1         15           2
 Q glutamine           5.4          8           2
 R arginine            4.7          7           2
 S serine              6.8         10           2
 T threonine           4.1          6           1
 V valine              8.1         12           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gametocyte specific factor 1-like isoform 1 
GTSF1L                0.764   gametocyte specific factor 1-like isoform 2 
GTSF1                 0.178   gametocyte specific factor 1 
SNRNP48               0.041   U11/U12 snRNP 48K 
UTP14A                0.017   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
ENOX2                 0.017   ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo...
ENOX2                 0.017   ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo...
PHF3                  0.014   PHD finger protein 3 
LAMC2                 0.010   laminin, gamma 2 isoform b precursor 
LAMC2                 0.010   laminin, gamma 2 isoform a precursor 
TRIM28                0.010   tripartite motif-containing 28 protein 
EIF4B                 0.010   eukaryotic translation initiation factor 4B 
FBLN2                 0.010   fibulin 2 isoform b precursor 
FBLN2                 0.010   fibulin 2 isoform a precursor 
KCNN3                 0.007   small conductance calcium-activated potassium chann...
ATAD5                 0.007   ATPase family, AAA domain containing 5 
ZNHIT3                0.007   thyroid hormone receptor interactor 3 
SLC4A1AP              0.007   solute carrier family 4 (anion exchanger), member 1...
FAM53C                0.007   hypothetical protein LOC51307 
FAM53C                0.007   hypothetical protein LOC51307 
ZNF385B               0.007   zinc finger protein 385B isoform 3 
ZNF385B               0.007   zinc finger protein 385B isoform 2 
ZNF385B               0.007   zinc finger protein 385B isoform 1 
MYCBP2                0.007   MYC binding protein 2 
SMC6                  0.007   SMC6 protein 
SMC6                  0.007   SMC6 protein 
SNCG                  0.007   synuclein, gamma (breast cancer-specific protein 1)...
CCDC76                0.007   coiled-coil domain containing 76 
COBL                  0.007   cordon-bleu homolog 
ESCO2                 0.007   establishment of cohesion 1 homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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