Guide to the Human Genome
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Name: CCDC76 Sequence: fasta or formatted (481aa) NCBI GI: 226493203
Description:

coiled-coil domain containing 76

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         35           2
 C cysteine            3.1         15           2
 D aspartate           5.6         27           2
 E glutamate           8.5         41           3
 F phenylalanine       2.9         14           1
 G glycine             6.4         31           2
 H histidine           4.2         20           2
 I isoleucine          4.8         23           1
 K lysine              9.8         47           3
 L leucine            10.4         50           2
 M methionine          1.2          6           1
 N asparagine          4.0         19           1
 P proline             4.6         22           1
 Q glutamine           3.3         16           2
 R arginine            5.4         26           2
 S serine              5.4         26           3
 T threonine           4.6         22           2
 V valine              5.0         24           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 76 
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
SNRNP48               0.009   U11/U12 snRNP 48K 
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
SNAP23                0.008   synaptosomal-associated protein 23 isoform SNAP23B [...
EEA1                  0.007   early endosome antigen 1, 162kD 
CCDC88A               0.007   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.007   coiled-coil domain containing 88A isoform 1 
EXD1                  0.006   exonuclease 3'-5' domain containing 1 
UACA                  0.006   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.006   uveal autoantigen with coiled-coil domains and ankyr...
RAD18                 0.005   postreplication repair protein hRAD18p 
CCDC110               0.005   coiled-coil domain containing 110 isoform b 
CCDC110               0.005   coiled-coil domain containing 110 isoform a 
GPR158                0.005   G protein-coupled receptor 158 
NDE1                  0.005   nuclear distribution gene E homolog 1 
NDE1                  0.005   nuclear distribution gene E homolog 1 
PLAG1                 0.005   pleiomorphic adenoma gene 1 isoform b 
PLAG1                 0.005   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.005   pleiomorphic adenoma gene 1 isoform a 
DCDC2                 0.005   doublecortin domain containing 2 
ZNF462                0.005   zinc finger protein 462 
MIB1                  0.005   mindbomb homolog 1 
SPZ1                  0.004   spermatogenic leucine zipper 1 
TRIP11                0.004   thyroid hormone receptor interactor 11 
ZNF513                0.004   zinc finger protein 513 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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