Guide to the Human Genome
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Name: GTSF1 Sequence: fasta or formatted (167aa) NCBI GI: 194306537
Description:

gametocyte specific factor 1

Referenced in:

Ovary, Uterus and Placenta
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          9           1
 C cysteine            4.8          8           1
 D aspartate           7.2         12           2
 E glutamate           6.0         10           2
 F phenylalanine       1.8          3           1
 G glycine             1.8          3           1
 H histidine           4.8          8           2
 I isoleucine          3.6          6           1
 K lysine              5.4          9           1
 L leucine             6.6         11           2
 M methionine          1.2          2           1
 N asparagine          7.2         12           2
 P proline             7.8         13           2
 Q glutamine           5.4          9           1
 R arginine            5.4          9           1
 S serine              8.4         14           2
 T threonine           6.6         11           2
 V valine              4.8          8           2
 W tryptophan          3.0          5           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gametocyte specific factor 1 
GTSF1L                0.152   gametocyte specific factor 1-like isoform 1 
GTSF1L                0.144   gametocyte specific factor 1-like isoform 2 
ZNF652                0.021   zinc finger protein 652 
ZNF652                0.021   zinc finger protein 652 
SNRNP48               0.021   U11/U12 snRNP 48K 
EVI1                  0.015   ecotropic viral integration site 1 isoform a 
EVI1                  0.015   ecotropic viral integration site 1 isoform b 
EVI1                  0.015   ecotropic viral integration site 1 isoform b 
ACTN3                 0.015   actinin, alpha 3 
CCDC76                0.009   coiled-coil domain containing 76 
C2orf56               0.009   hypothetical protein LOC55471 isoform 3 
C2orf56               0.009   hypothetical protein LOC55471 isoform 1 
SIAH1                 0.006   seven in absentia homolog 1 isoform b 
TRAF2                 0.006   TNF receptor-associated factor 2 
ACTN1                 0.006   actinin, alpha 1 isoform c 
ACTN1                 0.006   actinin, alpha 1 isoform a 
ACTN1                 0.006   actinin, alpha 1 isoform b 
KIAA0802              0.006   hypothetical protein LOC23255 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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