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Search of human proteins with 56676324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56676324 LEM domain containing 1 [Homo sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56676324 LEM domain containing 1 [Homo sapiens] 223 3e-59
gi|4507555 thymopoietin isoform alpha [Homo sapiens] 49 9e-07
gi|73760401 thymopoietin isoform gamma [Homo sapiens] 44 3e-05
gi|73760405 thymopoietin isoform beta [Homo sapiens] 44 3e-05
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 40 3e-04
gi|7706607 LEM domain containing 3 [Homo sapiens] 39 0.001
gi|168229256 ankyrin repeat domain 41 [Homo sapiens] 37 0.004
gi|4557553 emerin [Homo sapiens] 35 0.017
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 33 0.038
gi|48255929 periphilin 1 isoform 1 [Homo sapiens] 33 0.065
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 32 0.14
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 30 0.55
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 30 0.55
gi|119220596 helios isoform 1 [Homo sapiens] 30 0.55
gi|119220592 helios isoform 2 [Homo sapiens] 30 0.55
gi|50345881 cytoplasmic polyadenylation element binding protein ... 29 0.71
gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens] 29 0.71
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 29 0.71
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 29 0.71
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 29 0.71
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 29 0.71
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 29 0.93
gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo ... 28 1.6
gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo ... 28 1.6
gi|22748641 CHMP family, member 7 [Homo sapiens] 28 1.6
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 28 2.1
gi|4758216 dishevelled 2 [Homo sapiens] 28 2.1
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens] 28 2.1
gi|33286436 gametogenetin [Homo sapiens] 28 2.1
>gi|56676324 LEM domain containing 1 [Homo sapiens]
Length = 108
Score = 223 bits (567), Expect = 3e-59
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MVDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDG 60
MVDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDG
Sbjct: 1 MVDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDG 60
Query: 61 AQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSRAGEKKVSQWA 108
AQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSRAGEKKVSQWA
Sbjct: 61 AQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSRAGEKKVSQWA 108
>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
Length = 694
Score = 48.9 bits (115), Expect = 9e-07
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL--------------LVSPPC 47
+DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L +S
Sbjct: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSA 169
Query: 48 APPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRE 88
NG + D + SD+ EG +EH+ +S + P E
Sbjct: 170 ENTRQNGSNDSD--RYSDNEEGKKKEHKKVKSTRDIVPFSE 208
>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
Length = 345
Score = 43.9 bits (102), Expect = 3e-05
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
+DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L
Sbjct: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149
>gi|73760405 thymopoietin isoform beta [Homo sapiens]
Length = 454
Score = 43.9 bits (102), Expect = 3e-05
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
+DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L
Sbjct: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL 149
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 40.4 bits (93), Expect = 3e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 7 LSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
LSD +L+ +L+ LGF PGPI +TR +Y KL +L
Sbjct: 4 LSDLELRRELQALGFQPGPITDTTRDVYRNKLRRL 38
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 7 LSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
LSD +L +QL + G SPGP+ STR +Y KKL +L
Sbjct: 12 LSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKL 46
>gi|168229256 ankyrin repeat domain 41 [Homo sapiens]
Length = 615
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 4 VKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQD 63
V +SD +L L LG +P PI P TR+LY ++L + ++P P EL A
Sbjct: 358 VSTVSDLELLKGLRALGENPHPITPFTRQLYHQQLEEAQIAP--GPEFSGHSLELAAALR 415
Query: 64 SDDSEGGLQEHQAPESHMGLSPKRETTARKTR 95
+ G + + QA E + ++ AR+ R
Sbjct: 416 T----GCIPDVQADEDALAQQFEQPDPARRWR 443
>gi|4557553 emerin [Homo sapiens]
Length = 254
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 7 LSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDD 66
LSD +L L + GP++ STR+LYEKK+ + P + D +
Sbjct: 7 LSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYSFSDLNS 66
Query: 67 SEGGLQEHQAPESHMGL 83
+ G + P+ L
Sbjct: 67 TRGDADMYDLPKKEDAL 83
>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
sapiens]
Length = 938
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 4 VKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLV 43
+K L+ L+ ++ K G GPI +TR ++EKKL Q L+
Sbjct: 72 LKLLNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALL 111
>gi|48255929 periphilin 1 isoform 1 [Homo sapiens]
Length = 458
Score = 32.7 bits (73), Expect = 0.065
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 49 PPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSR 98
PPV N + DG +++ E Q P++ L P+++ R T+L R
Sbjct: 352 PPVRNTEMDHDGTPENEGEETAQSAPQPPQAPQPLQPRKKRVRRTTQLRR 401
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 46 PCAPPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSRAGEKK 103
P AP + R + DD G + + P+S SP+R + K + R+GE+K
Sbjct: 257 PLAPIAVPAQRLQQSQRTGDDPARGWEWQRGPQSQKEASPRRGEYSGKGQRERSGERK 314
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 46 PCAPPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRLSRAGEKK 103
P AP + R + DD G + + P+S SP+R + K + R+GE+K
Sbjct: 257 PLAPIAVPAQRLQQSQRTGDDPARGWEWQRGPQSQKEASPRRGEYSGKGQRERSGERK 314
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 20 GFSPGPILP------STRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDDSEGGLQ- 72
G +P P+ P S + + +L L P PP GPR+ Q Q
Sbjct: 400 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQR 459
Query: 73 ---EHQAPESHMGLSPKRETTARKTRLSRA 99
+ Q P S SP+++ + +LSRA
Sbjct: 460 LSPQGQQPLSPQSGSPQQQRSPGSPQLSRA 489
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 20 GFSPGPILP------STRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDDSEGGLQ- 72
G +P P+ P S + + +L L P PP GPR+ Q Q
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQR 460
Query: 73 ---EHQAPESHMGLSPKRETTARKTRLSRA 99
+ Q P S SP+++ + +LSRA
Sbjct: 461 LSPQGQQPLSPQSGSPQQQRSPGSPQLSRA 490
>gi|119220596 helios isoform 1 [Homo sapiens]
Length = 526
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 63 DSDDSEGGLQEHQAPESHMGLSPKRE 88
DS DSE +HQ+ + H L+PKR+
Sbjct: 406 DSTDSESSHDDHQSYQGHPALNPKRK 431
>gi|119220592 helios isoform 2 [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 63 DSDDSEGGLQEHQAPESHMGLSPKRE 88
DS DSE +HQ+ + H L+PKR+
Sbjct: 380 DSTDSESSHDDHQSYQGHPALNPKRK 405
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 29.3 bits (64), Expect = 0.71
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 25 PILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLS 84
P+ T K E V L SP APP NGP D Q GL HQ P+
Sbjct: 39 PLSSETPKPEENSAVPAL-SPAAAPPAPNGP---DKMQMESPLLPGLSFHQPPQQP---P 91
Query: 85 PKRETTARKTRLS 97
P +E A LS
Sbjct: 92 PPQEPAAPGASLS 104
>gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
Length = 192
Score = 29.3 bits (64), Expect = 0.71
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 24 GPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDS------DDSEGGLQEHQAP 77
GP +P + ++ V +LV+PP PP L A S D G P
Sbjct: 84 GPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRP 143
Query: 78 ESHMGLSPKRETTA-----RKTRLSRAGEKKVSQW 107
+G S R A + R RAG SQW
Sbjct: 144 AQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQW 178
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 54 GPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRL 96
GP E G++ SD EG L Q PE+ G+ + R+++L
Sbjct: 196 GPAETVGSEASDTVEGVLPSKQEPENDQGVVSQAGKDDRESKL 238
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 54 GPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRL 96
GP E G++ SD EG L Q PE+ G+ + R+++L
Sbjct: 196 GPAETVGSEASDTVEGVLPSKQEPENDQGVVSQAGKDDRESKL 238
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 54 GPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRL 96
GP E G++ SD EG L Q PE+ G+ + R+++L
Sbjct: 196 GPAETVGSEASDTVEGVLPSKQEPENDQGVVSQAGKDDRESKL 238
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 54 GPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRETTARKTRL 96
GP E G++ SD EG L Q PE+ G+ + R+++L
Sbjct: 196 GPAETVGSEASDTVEGVLPSKQEPENDQGVVSQAGKDDRESKL 238
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 28.9 bits (63), Expect = 0.93
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 22 SPGPILPSTRKLYE--KKLVQLLVSP-PCAPPVMNGPRELDGAQDSDDSEGGLQEHQAPE 78
SPGP P K E + L SP P PP + GP LDG D D + GL+ P
Sbjct: 1175 SPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGL-DGKDGKPGLRGDPGPA 1233
Query: 79 SHMGL 83
GL
Sbjct: 1234 GPPGL 1238
>gi|239751590 PREDICTED: hypothetical protein XP_002347921 [Homo
sapiens]
Length = 192
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 24 GPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDS------DDSEGGLQEHQAP 77
GP +P + ++ V +LV+PP PP L A S D G P
Sbjct: 84 GPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRP 143
Query: 78 ESHMGLSPKRETTA-----RKTRLSRAGEKKVSQW 107
+G S R A + R RAG SQW
Sbjct: 144 AQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQW 178
>gi|239746102 PREDICTED: hypothetical protein XP_002343657 [Homo
sapiens]
Length = 192
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 24 GPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDS------DDSEGGLQEHQAP 77
GP +P + ++ V +LV+PP PP L A S D G P
Sbjct: 84 GPGMPCAPRAQRREAVGVLVAPPRVPPRTPRRGSLGVAVFSSSDLTFDAEAQGQVRRPRP 143
Query: 78 ESHMGLSPKRETTA-----RKTRLSRAGEKKVSQW 107
+G S R A + R RAG SQW
Sbjct: 144 AQAVGPSGARRPEAPGWFRKSDRSGRAGTGAWSQW 178
>gi|22748641 CHMP family, member 7 [Homo sapiens]
Length = 453
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 7 LSDCKLQNQLEKLGFSPGPILPSTR 31
+SD +L+ +LEKL S G ++PS++
Sbjct: 416 ISDAELEAELEKLSLSEGGLVPSSK 440
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 16/47 (34%)
Query: 17 EKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQD 63
+ L F PGP LPSTR A GPR+ +GAQD
Sbjct: 364 KSLCFRPGPALPSTR----------------ARQSFPGPRQPNGAQD 394
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 60 GAQDSDDSEG--GLQEHQAPESHMGLSPKRETTARKTRLSRAGE 101
G+ SD G G E +APES G + E ++R L R GE
Sbjct: 593 GSTRSDGGAGRTGRPEERAPESKSGSGSESEPSSRGGSLRRGGE 636
>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
Length = 248
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 46 PCAPPVMNGPRE--LDGAQDSDDSEGGLQEHQAP--ESHMGLSPKRETTARK 93
P PP P E DG + SD + +Q+H+ P + + PK E R+
Sbjct: 15 PAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKHEVGTRR 66
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 21 FSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDDSEGGLQEH------ 74
+ P P LPS R+ ++++ L + P +PP + + Q + + GG H
Sbjct: 171 WKPPPPLPSERQPADRRITPALAT-PASPPTESQAGPRNQGQTAGRARGGAPPHAGEGEM 229
Query: 75 -QAPESHMGLS 84
Q +S GLS
Sbjct: 230 AQPADSESGLS 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,149,149
Number of Sequences: 37866
Number of extensions: 243403
Number of successful extensions: 700
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 86
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Search sequences |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.