Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287572 Sequence: fasta or formatted (192aa) NCBI GI: 239746102
Description:

PREDICTED: hypothetical protein XP_002343657

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         22           1
 C cysteine            1.0          2           1
 D aspartate           2.6          5           1
 E glutamate           4.2          8           1
 F phenylalanine       2.1          4           1
 G glycine            11.5         22           1
 H histidine           2.1          4           1
 I isoleucine          1.0          2           1
 K lysine              0.5          1           1
 L leucine             4.7          9           1
 M methionine          2.1          4           1
 N asparagine          1.0          2           1
 P proline            13.0         25           2
 Q glutamine           6.8         13           2
 R arginine           12.0         23           2
 S serine              9.4         18           3
 T threonine           6.2         12           2
 V valine              5.7         11           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343657 
LOC100290104          1.000   PREDICTED: hypothetical protein XP_002347921 
LOC100292736          0.997   PREDICTED: similar to hCG1996962 
HCN2                  0.051   hyperpolarization activated cyclic nucleotide-gated...
CREBBP                0.048   CREB binding protein isoform b 
CREBBP                0.048   CREB binding protein isoform a 
SLC6A5                0.046   solute carrier family 6 (neurotransmitter transporte...
HEG1                  0.038   HEG homolog 1 
BTBD12                0.032   BTB (POZ) domain containing 12 
FRAT2                 0.029   GSK-3 binding protein FRAT2 
LOC440829             0.024   PREDICTED: transmembrane protein 46-like 
BSN                   0.024   bassoon protein 
MUC16                 0.024   mucin 16 
ESPL1                 0.021   separase 
ZNF207                0.021   zinc finger protein 207 isoform c 
ZNF219                0.021   zinc finger protein 219 
ZNF219                0.021   zinc finger protein 219 
ZNF207                0.021   zinc finger protein 207 isoform a 
CEP110                0.021   centrosomal protein 110kDa 
ZNF219                0.021   zinc finger protein 219 
COL1A1                0.021   alpha 1 type I collagen preproprotein 
LOC440829             0.021   PREDICTED: transmembrane protein 46-like 
LOC100292122          0.021   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.021   PREDICTED: hypothetical protein XP_002344191 
ZNF469                0.021   zinc finger protein 469 
DDN                   0.021   dendrin 
LOC440017             0.019   PREDICTED: similar to double homeobox, 4 
LOC728022             0.019   PREDICTED: similar to double homeobox, 4 
LOC440014             0.019   PREDICTED: similar to double homeobox, 4 
LOC399839             0.019   PREDICTED: similar to double homeobox, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press