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Search of human proteins with 56090523
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56090523 shisa homolog 2 [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56090523 shisa homolog 2 [Homo sapiens] 616 e-177
gi|122937450 shisa homolog 3 [Homo sapiens] 201 5e-52
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 56 3e-08
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 55 6e-08
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 55 7e-08
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 55 1e-07
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 55 1e-07
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 50 3e-06
gi|39930575 shisa homolog 4 [Homo sapiens] 47 3e-05
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 42 5e-04
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 42 5e-04
gi|150010659 hypothetical protein LOC85352 [Homo sapiens] 42 6e-04
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 39 0.004
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 39 0.007
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 39 0.007
gi|21703710 scotin [Homo sapiens] 37 0.021
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 37 0.027
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 37 0.027
gi|171543895 ataxin 2 [Homo sapiens] 36 0.035
gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens] 35 0.079
gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens] 35 0.079
gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens] 35 0.079
gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens] 35 0.079
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 34 0.13
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 34 0.13
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 34 0.13
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 34 0.13
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 34 0.13
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 34 0.13
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 34 0.13
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 616 bits (1588), Expect = e-177
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MWGARRSSVSSSWNAASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDG 60
MWGARRSSVSSSWNAASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDG
Sbjct: 1 MWGARRSSVSSSWNAASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDG 60
Query: 61 GDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLI 120
GDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLI
Sbjct: 61 GDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLI 120
Query: 121 VGSVFVAFIILGSLVAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQ 180
VGSVFVAFIILGSLVAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQ
Sbjct: 121 VGSVFVAFIILGSLVAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQ 180
Query: 181 SSTAASSSSSANSGARAPPTRSQTNCCLPEGTMNNVYVNMPTNFSVLNCQQATQIVPHQG 240
SSTAASSSSSANSGARAPPTRSQTNCCLPEGTMNNVYVNMPTNFSVLNCQQATQIVPHQG
Sbjct: 181 SSTAASSSSSANSGARAPPTRSQTNCCLPEGTMNNVYVNMPTNFSVLNCQQATQIVPHQG 240
Query: 241 QYLHPPYVGYTVQHDSVPMTAVPPFMDGLQPGYRQIQSPFPHTNSEQKMYPAVTV 295
QYLHPPYVGYTVQHDSVPMTAVPPFMDGLQPGYRQIQSPFPHTNSEQKMYPAVTV
Sbjct: 241 QYLHPPYVGYTVQHDSVPMTAVPPFMDGLQPGYRQIQSPFPHTNSEQKMYPAVTV 295
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 201 bits (512), Expect = 5e-52
Identities = 108/204 (52%), Positives = 137/204 (67%), Gaps = 16/204 (7%)
Query: 29 AGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGC 88
AGA+ SGEYCHGW+D QG + GFQCPE FD DATICCGSCALRYCC++A+ARL+QGGC
Sbjct: 19 AGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGC 78
Query: 89 DNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQD 148
NDR+ + + P +A P+YVPFLIVGS+F+AFIILGS+VA CC CLRPK+
Sbjct: 79 TNDRR---------ELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEP 129
Query: 149 PQQS-RAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCC 207
QQ R + ET+PMI STS + SRQSSTA SSSS+ S R R++ C
Sbjct: 130 SQQPIRFSLRSYQTETLPMI-LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAEPGCL 188
Query: 208 LPE-----GTMNNVYVNMPTNFSV 226
+P T +++++ P+ F V
Sbjct: 189 VPSPPPPYTTSHSIHLAQPSGFLV 212
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 56.2 bits (134), Expect = 3e-08
Identities = 60/246 (24%), Positives = 89/246 (36%), Gaps = 35/246 (14%)
Query: 28 AAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGG 87
AA A E CHG+ D G + F C G CCG+C R+CC RL Q
Sbjct: 72 AARAPPPAELCHGYYDVMGQYDATFNCST----GSYRFCCGTCHYRFCCEHRHMRLAQAS 127
Query: 88 CDN-DRQQGAGEP-----GRADKDGPDGSAVPIYVPFLIVGSV-------------FVAF 128
C N D + A P G G G P +L G A+
Sbjct: 128 CSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRTGGAGGRGGEGPGGSTAY 187
Query: 129 IILGSLVAACCCRCLRPKQDPQQSRAPGGNRLMETIP--MIPSASTSRGSSSRQSSTAAS 186
++ G + A + SRAP +R + +P ++ G +R +S
Sbjct: 188 VVCGVISFALAVGVGAKVAFSKASRAPRAHRDI-NVPRALVDILRHQAGPGTRPDRARSS 246
Query: 187 SSSSANSGARAPPTRSQTNCCLPEGTMNNVYVNMP-----TNFSVLNCQQATQIVPHQGQ 241
S + G + P R+ N T N + +P ++S L+C ++ H
Sbjct: 247 SLTPGIGGPDSMPPRTPKNLYNTVKTPNLDWRALPPPSPSLHYSTLSCSRSF----HNLS 302
Query: 242 YLHPPY 247
+L P Y
Sbjct: 303 HLPPSY 308
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 55.5 bits (132), Expect = 6e-08
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 36 EYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGC---DNDR 92
++C G+ D G W F C GD CCG+C R+CC+ + RL+Q C D
Sbjct: 113 DFCRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPL 168
Query: 93 QQGAGEPGRADKDGP--DGSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQDPQ 150
G+P A KD P D + + I+ V +++G + RP+++
Sbjct: 169 WLNTGKP-PARKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQRE-H 226
Query: 151 QSRA 154
SRA
Sbjct: 227 MSRA 230
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 55.1 bits (131), Expect = 7e-08
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 36 EYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGC---DNDR 92
++C G+ D G W F C GD CCG+C R+CC+ + RL+Q C D
Sbjct: 113 DFCRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPL 168
Query: 93 QQGAGEPGRADKDGP--DGSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQD 148
G+P A KD P D + + I+ V +++G + RP+++
Sbjct: 169 WLNTGKP-PARKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQRE 225
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 31 ARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDN 90
A G+ C G+ D G W F C G + CCG+C R+CC RLDQ C N
Sbjct: 53 APEGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSN 108
Query: 91 DRQQGAGEPGRADKDGPDGSA 111
+ GR D +A
Sbjct: 109 YDTPAWVQTGRPPARARDTAA 129
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 31 ARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDN 90
A G+ C G+ D G W F C G + CCG+C R+CC RLDQ C N
Sbjct: 53 APEGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSN 108
Query: 91 DRQQGAGEPGRADKDGPDGSA 111
+ GR D +A
Sbjct: 109 YDTPAWVQTGRPPARARDTAA 129
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 49.7 bits (117), Expect = 3e-06
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 24 AALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARL 83
A AA A + E C G+ D G + F+C G CCG+C R+CC +L
Sbjct: 80 AVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESG--YLYCCGTCYYRFCCKKRHEKL 137
Query: 84 DQGGCDNDR--------QQGAGEPGRADKDGP--DGSAVPIYVPFLIVGSVFVA 127
DQ C N + PG +K P D + +Y+ ++ V VA
Sbjct: 138 DQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVA 191
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 46.6 bits (109), Expect = 3e-05
Identities = 46/150 (30%), Positives = 59/150 (39%), Gaps = 24/150 (16%)
Query: 21 LLLAALLAAGARA--SGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSS 78
L ALL GA +GE C +LD G W GF C E F T CCG+C RYCC
Sbjct: 12 LTAIALLVLGAPLVLAGEDCLWYLDRNGSWHPGFNC-EFF-----TFCCGTCYHRYCCRD 65
Query: 79 AEARLDQGGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSLVAAC 138
+ +RQQ SAV ++V +V + F+ C
Sbjct: 66 LTLLI------TERQQKHCLAFSPKTIAGIASAVILFV--AVVATTICCFL--------C 109
Query: 139 CCRCLRPKQDPQQSRAPGGNRLMETIPMIP 168
C L ++ QS G M IP+ P
Sbjct: 110 SCCYLYRRRQQLQSPFEGQEIPMTGIPVQP 139
>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 42.4 bits (98), Expect = 5e-04
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 46/164 (28%)
Query: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAG 97
C G+ + FQCP R +G CCG L+YCCS
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS-------------------- 47
Query: 98 EPGRADKDGPDGSAVPIYVPF-----------LIVGSVFVAFIILGSLVAACCCRCLRPK 146
EPG Y P+ ++G A ++L +++ C L
Sbjct: 48 EPGS-------------YFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLFLY 94
Query: 147 QDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSS 190
PQ R G +L P S G + +S AAS++++
Sbjct: 95 TKPQ--RLDTGLKLQHLEPSSTQEGKSNGKTKALNSNAASNATN 136
>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 42.4 bits (98), Expect = 5e-04
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 46/164 (28%)
Query: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDNDRQQGAG 97
C G+ + FQCP R +G CCG L+YCCS
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS-------------------- 47
Query: 98 EPGRADKDGPDGSAVPIYVPF-----------LIVGSVFVAFIILGSLVAACCCRCLRPK 146
EPG Y P+ ++G A ++L +++ C L
Sbjct: 48 EPGS-------------YFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLFLY 94
Query: 147 QDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSS 190
PQ R G +L P S G + +S AAS++++
Sbjct: 95 TKPQ--RLDTGLKLQHLEPSSTQEGKSNGKTKALNSNAASNATN 136
>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
Length = 199
Score = 42.0 bits (97), Expect = 6e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 16 ASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICC--GSCALR 73
A L LL +A+L+A R C + D +G + GF CP D +CC + +
Sbjct: 13 AVLFSLLFSAVLSAHFRV----CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFK 68
Query: 74 YCCSSAE 80
YCC+ E
Sbjct: 69 YCCNETE 75
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 39.3 bits (90), Expect = 0.004
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCS 77
C G+ + FQCP R +G CCG L+YCCS
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 95 GAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGS---LVAACCCRCLRPKQDPQQ 151
G G G +DG + P + F + G VAA C P Q P Q
Sbjct: 12 GGGSSGIGGEDGVHFQSYPFDFLEFLNHQRFEPMELYGEHAKAVAALPCAPGPPPQPPPQ 71
Query: 152 SRAPGGNRLMETI----PMIPSASTSRGSSSRQSSTAASSSSSANSGARAP 198
P + ++ +PS+S+S SSS SS+++SSSSS++S A+ P
Sbjct: 72 PPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 145 PKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPP 199
P+ P Q P + + S+S+S SSS SS+++SSSSS++ + P
Sbjct: 70 PQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDP 124
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 95 GAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGS---LVAACCCRCLRPKQDPQQ 151
G G G +DG + P + F + G VAA C P Q P Q
Sbjct: 12 GGGSSGIGGEDGVHFQSYPFDFLEFLNHQRFEPMELYGEHAKAVAALPCAPGPPPQPPPQ 71
Query: 152 SRAPGGNRLMETI----PMIPSASTSRGSSSRQSSTAASSSSSANSGARAP 198
P + ++ +PS+S+S SSS SS+++SSSSS++S A+ P
Sbjct: 72 PPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 145 PKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPP 199
P+ P Q P + + S+S+S SSS SS+++SSSSS++ + P
Sbjct: 70 PQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDP 124
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.021
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 36/149 (24%)
Query: 18 LLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCS 77
LL LLL LL A GE C + ++G+ CP+ CCG+C +YCCS
Sbjct: 11 LLPLLLLLLLTPPPGARGEVC---MASRGLSLFPESCPD--------FCCGTCDDQYCCS 59
Query: 78 SA--------------EARLDQGGCDNDRQQGAG---EPGRADKDGPDGSAVPIYVPFLI 120
EA + + Q G+ PG D G+ + + + +
Sbjct: 60 DVLKKFVWSEERCAVPEASV-PASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFV 118
Query: 121 VGSVFVAFIILGSLVAACCC---RCLRPK 146
+ V I+ +CCC C RP+
Sbjct: 119 LSVV----TIIICFTCSCCCLYKTCRRPR 143
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 36.6 bits (83), Expect = 0.027
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 151 QSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTA-ASSSSSANSGARAPPTRSQTNCCLP 209
Q++A G + + P P+ STS SS+ S+T+ ++++S P T+ QT
Sbjct: 252 QAQAVGASTPTTSSPA-PAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAV 310
Query: 210 EGTMNNVYVNMPTNFSVLNCQQATQIVPHQGQYLHPPYVGYTVQHDSVPMTAVPPFMDGL 269
V V+ P + Q VP PP V ++V P TA+P F +
Sbjct: 311 SVATPTVSVSTPAPTAT-----PVQTVPQPHPQTLPPAVPHSVPQ---PTTAIPAFPPVM 362
Query: 270 QPGYR 274
P +R
Sbjct: 363 VPPFR 367
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 36.6 bits (83), Expect = 0.027
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 151 QSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTA-ASSSSSANSGARAPPTRSQTNCCLP 209
Q++A G + + P P+ STS SS+ S+T+ ++++S P T+ QT
Sbjct: 252 QAQAVGASTPTTSSPA-PAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAV 310
Query: 210 EGTMNNVYVNMPTNFSVLNCQQATQIVPHQGQYLHPPYVGYTVQHDSVPMTAVPPFMDGL 269
V V+ P + Q VP PP V ++V P TA+P F +
Sbjct: 311 SVATPTVSVSTPAPTAT-----PVQTVPQPHPQTLPPAVPHSVPQ---PTTAIPAFPPVM 362
Query: 270 QPGYR 274
P +R
Sbjct: 363 VPPFR 367
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 36.2 bits (82), Expect = 0.035
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 153 RAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAP--PTRSQTNCCLPE 210
R PGG+ L+ + PS S+S SSS S+TA SS +A SG P +N LP+
Sbjct: 197 RKPGGSGLLASPAAAPSPSSSSVSSS--SATAPSSVVAATSGGGRPGLGRGRNSNKGLPQ 254
Query: 211 GTM--NNVYVNM 220
T+ + +Y NM
Sbjct: 255 STISFDGIYANM 266
>gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.079
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 78 SAEARLDQ---GGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSL 134
+A A LD G D+ G G G+A P GS V + + A L S+
Sbjct: 288 AALANLDNIFSAGQGGDQGSGFGTTGKA----PVGSVVSVPSQSSASSDKYAALAELDSV 343
Query: 135 VAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSG 194
++ + S + + + T+P++ SA T SSS + A+ S++
Sbjct: 344 FSSAAT-----SSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVA 398
Query: 195 ARAPPTRSQTNCC------LPEGTMNNVYVNMPTNF 224
A P S TN T ++MPT F
Sbjct: 399 AAGPSVASSTNPFQTNARGATAATFGTASMSMPTGF 434
>gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens]
Length = 560
Score = 35.0 bits (79), Expect = 0.079
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 78 SAEARLDQ---GGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSL 134
+A A LD G D+ G G G+A P GS V + + A L S+
Sbjct: 328 AALANLDNIFSAGQGGDQGSGFGTTGKA----PVGSVVSVPSQSSASSDKYAALAELDSV 383
Query: 135 VAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSG 194
++ + S + + + T+P++ SA T SSS + A+ S++
Sbjct: 384 FSSAAT-----SSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVA 438
Query: 195 ARAPPTRSQTNCC------LPEGTMNNVYVNMPTNF 224
A P S TN T ++MPT F
Sbjct: 439 AAGPSVASSTNPFQTNARGATAATFGTASMSMPTGF 474
>gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens]
Length = 584
Score = 35.0 bits (79), Expect = 0.079
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 78 SAEARLDQ---GGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSL 134
+A A LD G D+ G G G+A P GS V + + A L S+
Sbjct: 352 AALANLDNIFSAGQGGDQGSGFGTTGKA----PVGSVVSVPSQSSASSDKYAALAELDSV 407
Query: 135 VAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSG 194
++ + S + + + T+P++ SA T SSS + A+ S++
Sbjct: 408 FSSAAT-----SSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVA 462
Query: 195 ARAPPTRSQTNCC------LPEGTMNNVYVNMPTNF 224
A P S TN T ++MPT F
Sbjct: 463 AAGPSVASSTNPFQTNARGATAATFGTASMSMPTGF 498
>gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens]
Length = 562
Score = 35.0 bits (79), Expect = 0.079
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 78 SAEARLDQ---GGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSL 134
+A A LD G D+ G G G+A P GS V + + A L S+
Sbjct: 328 AALANLDNIFSAGQGGDQGSGFGTTGKA----PVGSVVSVPSQSSASSDKYAALAELDSV 383
Query: 135 VAACCCRCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSG 194
++ + S + + + T+P++ SA T SSS + A+ S++
Sbjct: 384 FSSAAT-----SSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFVA 438
Query: 195 ARAPPTRSQTNCC------LPEGTMNNVYVNMPTNF 224
A P S TN T ++MPT F
Sbjct: 439 AAGPSVASSTNPFQTNARGATAATFGTASMSMPTGF 474
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTN 205
S+S+S S S SST+ SSSSS++SG+ +P R N
Sbjct: 97 SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 170 ASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLP 209
+STS GSSS SS++ASS S ++S +R+ + S + P
Sbjct: 87 SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 SASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPEGT 212
S+++S GSS+ S++ SSSSSA+S + + T ++ G+
Sbjct: 80 SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,912,804
Number of Sequences: 37866
Number of extensions: 623540
Number of successful extensions: 4979
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 4051
Number of HSP's gapped (non-prelim): 588
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.