Guide to the Human Genome
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Name: RNPS1 Sequence: fasta or formatted (305aa) NCBI GI: 6857826
Description:

RNA-binding protein S1, serine-rich domain

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [305aa] RNA-binding protein S1, serine-rich domain
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         10           1
 C cysteine            0.0          0           0
 D aspartate           4.6         14           1
 E glutamate           4.3         13           1
 F phenylalanine       1.0          3           1
 G glycine             5.6         17           2
 H histidine           2.3          7           1
 I isoleucine          2.3          7           1
 K lysine              9.5         29           3
 L leucine             2.6          8           2
 M methionine          3.0          9           1
 N asparagine          2.0          6           2
 P proline             9.2         28           4
 Q glutamine           0.7          2           1
 R arginine           17.0         52           3
 S serine             23.6         72           8
 T threonine           4.9         15           1
 V valine              2.6          8           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA-binding protein S1, serine-rich domain 
RNPS1                 1.000   RNA-binding protein S1, serine-rich domain 
LOC643446             0.979   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.979   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.976   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.976   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.976   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.976   PREDICTED: similar to ribonucleic acid binding prote...
PNN                   0.112   pinin, desmosome associated protein 
SFRS2                 0.102   splicing factor, arginine/serine-rich 2 
PPRC1                 0.100   peroxisome proliferator-activated receptor gamma, co...
TRA2B                 0.099   splicing factor, arginine/serine-rich 10 
PRPF4B                0.097   serine/threonine-protein kinase PRP4K 
ZC3H18                0.092   zinc finger CCCH-type containing 18 
SRRM2                 0.088   splicing coactivator subunit SRm300 
ZRANB2                0.088   zinc finger protein 265 isoform 1 
ZRANB2                0.088   zinc finger protein 265 isoform 2 
SFRS4                 0.087   splicing factor, arginine/serine-rich 4 
TNRC18                0.085   trinucleotide repeat containing 18 
SON                   0.085   SON DNA-binding protein isoform F 
SON                   0.085   SON DNA-binding protein isoform B 
TRA2A                 0.085   transformer-2 alpha 
SFRS3                 0.081   splicing factor, arginine/serine-rich 3 
SRRM1                 0.080   serine/arginine repetitive matrix 1 
SPEN                  0.078   spen homolog, transcriptional regulator 
LOC100170229          0.076   hypothetical protein LOC100170229 
MLLT3                 0.076   myeloid/lymphoid or mixed-lineage leukemia (trithor...
SFRS16                0.076   splicing factor, arginine/serine-rich 16 
SFRS2B                0.076   splicing factor, arginine/serine-rich 2B 
RSRC2                 0.076   arginine/serine-rich coiled-coil 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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