Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UHRF1BP1 Sequence: fasta or formatted (1440aa) NCBI GI: 134152667
Description:

ICBP90 binding protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        101           3
 C cysteine            1.5         21           1
 D aspartate           5.2         75           2
 E glutamate           7.0        101           2
 F phenylalanine       3.9         56           2
 G glycine             5.7         82           2
 H histidine           3.2         46           2
 I isoleucine          3.8         54           2
 K lysine              5.5         79           2
 L leucine            11.8        170           3
 M methionine          2.4         34           2
 N asparagine          3.1         44           2
 P proline             6.7         97           2
 Q glutamine           5.8         83           2
 R arginine            4.3         62           2
 S serine             10.2        147           4
 T threonine           4.7         67           2
 V valine              5.7         82           3
 W tryptophan          1.4         20           1
 Y tyrosine            1.3         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ICBP90 binding protein 1 
UHRF1BP1L             0.345   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
UHRF1BP1L             0.195   UHRF1 (ICBP90) binding protein 1-like isoform b [Hom...
VPS13B                0.010   vacuolar protein sorting 13B isoform 5 
VPS13B                0.010   vacuolar protein sorting 13B isoform 1 
VPS13B                0.010   vacuolar protein sorting 13B isoform 4 
VPS13B                0.010   vacuolar protein sorting 13B isoform 3 
FSCB                  0.007   fibrous sheath CABYR binding protein 
FHDC1                 0.006   FH2 domain containing 1 
AKAP13                0.006   A-kinase anchor protein 13 isoform 1 
AKAP13                0.006   A-kinase anchor protein 13 isoform 3 
AKAP13                0.006   A-kinase anchor protein 13 isoform 2 
DPCR1                 0.005   diffuse panbronchiolitis critical region 1 protein ...
CMYA5                 0.005   cardiomyopathy associated 5 
MUC16                 0.005   mucin 16 
ANK3                  0.004   ankyrin 3 isoform 1 
E2F4                  0.004   E2F transcription factor 4 
ZC3H18                0.004   zinc finger CCCH-type containing 18 
LOC100294236          0.004   PREDICTED: similar to diffuse panbronchiolitis crit...
GTF3C2                0.004   general transcription factor IIIC, polypeptide 2, be...
GTF3C2                0.004   general transcription factor IIIC, polypeptide 2, bet...
SRCAP                 0.004   Snf2-related CBP activator protein 
NOLC1                 0.004   nucleolar and coiled-body phosphoprotein 1 
TNS1                  0.004   tensin 
NCOA3                 0.004   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.004   nuclear receptor coactivator 3 isoform b 
C1orf173              0.004   hypothetical protein LOC127254 
SNRK                  0.003   SNF related kinase 
SNRK                  0.003   SNF related kinase 
FAM135B               0.003   hypothetical protein LOC51059 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press