Guide to the Human Genome
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Name: SNRK Sequence: fasta or formatted (765aa) NCBI GI: 156105707
Description:

SNF related kinase

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt mRNA [765aa] SNF related kinase
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         46           2
 C cysteine            2.1         16           2
 D aspartate           6.4         49           3
 E glutamate           6.8         52           3
 F phenylalanine       2.9         22           2
 G glycine             7.2         55           3
 H histidine           2.7         21           1
 I isoleucine          4.4         34           2
 K lysine              7.5         57           2
 L leucine             9.3         71           2
 M methionine          2.1         16           1
 N asparagine          3.9         30           2
 P proline             5.5         42           2
 Q glutamine           3.7         28           1
 R arginine            5.2         40           3
 S serine             10.2         78           3
 T threonine           5.5         42           3
 V valine              5.8         44           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SNF related kinase 
SNRK                  1.000   SNF related kinase 
SIK1                  0.173   SNF1-like kinase 
MARK2                 0.169   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.169   MAP/microtubule affinity-regulating kinase 2 isoform...
SIK2                  0.164   SNF1-like kinase 2 
MARK4                 0.163   MAP/microtubule affinity-regulating kinase 4 
MARK2                 0.163   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK1                 0.162   MAP/microtubule affinity-regulating kinase 1 
MARK2                 0.161   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.161   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK3                 0.161   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.161   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.161   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.161   MAP/microtubule affinity-regulating kinase 3 isoform...
QSK                   0.159   serine/threonine-protein kinase QSK 
BRSK1                 0.132   BR serine/threonine kinase 1 
PRKAA2                0.130   AMP-activated protein kinase alpha 2 catalytic subun...
MGC42105              0.129   serine/threonine-protein kinase NIM1 
MELK                  0.129   maternal embryonic leucine zipper kinase 
BRSK2                 0.127   BR serine/threonine kinase 2 
PRKAA1                0.126   protein kinase, AMP-activated, alpha 1 catalytic sub...
PRKAA1                0.123   protein kinase, AMP-activated, alpha 1 catalytic sub...
NUAK1                 0.109   AMPK-related protein kinase 5 
NUAK2                 0.106   NUAK family, SNF1-like kinase, 2 
CAMK1                 0.106   calcium/calmodulin-dependent protein kinase I 
TSSK2                 0.104   testis-specific serine kinase 2 
CAMK1D                0.102   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.102   calcium/calmodulin-dependent protein kinase ID isofo...
TSSK1B                0.098   testis-specific serine kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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