Guide to the Human Genome
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Name: GTF3C2 Sequence: fasta or formatted (911aa) NCBI GI: 78482617
Description:

general transcription factor IIIC, polypeptide 2, beta 110kDa

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [911aa] general transcription factor IIIC, polypeptide 2, beta 110kDa
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         65           2
 C cysteine            2.1         19           1
 D aspartate           4.5         41           1
 E glutamate           6.3         57           2
 F phenylalanine       3.3         30           2
 G glycine             7.5         68           2
 H histidine           2.7         25           2
 I isoleucine          2.5         23           1
 K lysine              4.5         41           2
 L leucine            11.3        103           4
 M methionine          1.9         17           1
 N asparagine          2.5         23           1
 P proline            10.6         97           2
 Q glutamine           4.6         42           2
 R arginine            6.0         55           3
 S serine              9.1         83           3
 T threonine           4.0         36           1
 V valine              4.8         44           2
 W tryptophan          2.1         19           1
 Y tyrosine            2.5         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor IIIC, polypeptide 2, be... 
GTF3C2                1.000   general transcription factor IIIC, polypeptide 2, bet...
MLL2                  0.014   myeloid/lymphoid or mixed-lineage leukemia 2 
CHD7                  0.012   chromodomain helicase DNA binding protein 7 
PDS5B                 0.012   PDS5, regulator of cohesion maintenance, homolog B [H...
NEFH                  0.012   neurofilament, heavy polypeptide 200kDa 
MAST4                 0.011   microtubule associated serine/threonine kinase fami...
TTN                   0.011   titin isoform N2-A 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
SRRM2                 0.011   splicing coactivator subunit SRm300 
BAT2D1                0.011   HBxAg transactivated protein 2 
PCLO                  0.011   piccolo isoform 2 
PCLO                  0.011   piccolo isoform 1 
CREBBP                0.011   CREB binding protein isoform b 
CREBBP                0.011   CREB binding protein isoform a 
TSSC1                 0.011   tumor suppressing subtransferable candidate 1 
MAGEC1                0.010   melanoma antigen family C, 1 
BCL9L                 0.010   B-cell CLL/lymphoma 9-like 
BAT2                  0.010   HLA-B associated transcript-2 
NCOA6                 0.010   nuclear receptor coactivator 6 
SETD1B                0.010   SET domain containing 1B 
PRAM1                 0.010   PML-RARA regulated adaptor molecule 1 
AAK1                  0.010   AP2 associated kinase 1 
BSN                   0.009   bassoon protein 
SPEN                  0.009   spen homolog, transcriptional regulator 
CDC20                 0.009   cell division cycle 20 
KIAA1211              0.009   hypothetical protein LOC57482 
BRD2                  0.009   bromodomain containing 2 
BRD2                  0.009   bromodomain containing 2 
MLLT3                 0.009   myeloid/lymphoid or mixed-lineage leukemia (trithor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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