Guide to the Human Genome
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Name: EXO1 Sequence: fasta or formatted (846aa) NCBI GI: 39995071
Description:

exonuclease 1 isoform b

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt mRNA [846aa] exonuclease 1 isoform b
alt prot [803aa] exonuclease 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         48           2
 C cysteine            2.5         21           1
 D aspartate           6.6         56           2
 E glutamate           6.1         52           2
 F phenylalanine       3.8         32           2
 G glycine             5.4         46           2
 H histidine           1.9         16           2
 I isoleucine          5.1         43           2
 K lysine              8.7         74           2
 L leucine             8.5         72           2
 M methionine          1.2         10           1
 N asparagine          5.0         42           2
 P proline             5.6         47           2
 Q glutamine           4.1         35           2
 R arginine            5.2         44           2
 S serine             11.6         98           3
 T threonine           4.8         41           2
 V valine              5.3         45           3
 W tryptophan          0.6          5           1
 Y tyrosine            2.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exonuclease 1 isoform b 
EXO1                  1.000   exonuclease 1 isoform b 
EXO1                  0.946   exonuclease 1 isoform a 
FEN1                  0.046   flap structure-specific endonuclease 1 
GEN1                  0.020   Gen homolog 1, endonuclease 
GEN1                  0.020   Gen homolog 1, endonuclease 
DSPP                  0.019   dentin sialophosphoprotein preproprotein 
DMP1                  0.015   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.015   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
ERCC5                 0.013   XPG-complementing protein 
MUC3B                 0.011   PREDICTED: mucin 3B, cell surface associated, parti...
CHD9                  0.010   chromodomain helicase DNA binding protein 9 
FSCB                  0.010   fibrous sheath CABYR binding protein 
ASTE1                 0.010   asteroid homolog 1 
C1orf113              0.010   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.010   SH3 domain-containing protein C1orf113 isoform 2 [H...
LOC729815             0.009   PREDICTED: hypothetical protein 
FAM120B               0.009   family with sequence similarity 120B 
BRCA1                 0.009   breast cancer 1, early onset isoform 2 
BRCA1                 0.009   breast cancer 1, early onset isoform 3 
BRCA1                 0.009   breast cancer 1, early onset isoform 1 
LOC729815             0.009   PREDICTED: hypothetical protein 
NKTR                  0.009   natural killer-tumor recognition sequence 
AP3B2                 0.008   adaptor-related protein complex 3, beta 2 subunit [H...
ASXL2                 0.008   additional sex combs like 2 
EML4                  0.008   echinoderm microtubule associated protein like 4 is...
EML4                  0.008   echinoderm microtubule associated protein like 4 iso...
TLE3                  0.008   transducin-like enhancer protein 3 isoform b 
TLE3                  0.008   transducin-like enhancer protein 3 isoform c 
TLE3                  0.008   transducin-like enhancer protein 3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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