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Search of human proteins with 5453936
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
(500 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 1048 0.0
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 451 e-127
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 377 e-104
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 370 e-102
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 206 3e-53
gi|148664218 POU transcription factor [Homo sapiens] 202 6e-52
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 194 1e-49
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 190 2e-48
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 189 4e-48
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 183 3e-46
gi|170650730 pituitary specific transcription factor 1 isoform b... 181 1e-45
gi|4505955 pituitary specific transcription factor 1 isoform alp... 181 1e-45
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 179 7e-45
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 178 1e-44
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 154 1e-37
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 142 5e-34
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 135 7e-32
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 105 1e-22
gi|122937424 one cut homeobox 3 [Homo sapiens] 87 3e-17
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 82 1e-15
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 82 1e-15
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 82 1e-15
gi|153792074 proline rich 12 [Homo sapiens] 81 3e-15
gi|40288197 GATA binding protein 6 [Homo sapiens] 80 3e-15
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 80 6e-15
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 79 1e-14
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 79 1e-14
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 79 1e-14
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 70 4e-12
gi|73476377 LBXCOR1 homolog [Homo sapiens] 66 6e-11
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 1048 bits (2710), Expect = 0.0
Identities = 500/500 (100%), Positives = 500/500 (100%)
Query: 1 MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS
Sbjct: 1 MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
Query: 61 GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASS 120
GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASS
Sbjct: 61 GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASS 120
Query: 121 PWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPH 180
PWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPH
Sbjct: 121 PWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPH 180
Query: 181 QGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGP 240
QGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGP
Sbjct: 181 QGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGP 240
Query: 241 GGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGG 300
GGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGG
Sbjct: 241 GGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGG 300
Query: 301 AGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 360
AGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI
Sbjct: 301 AGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 360
Query: 361 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGA 420
CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGA
Sbjct: 361 CRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGA 420
Query: 421 LESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQ 480
LESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQ
Sbjct: 421 LESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQ 480
Query: 481 VGTVSADTPPPHHGLQTSVQ 500
VGTVSADTPPPHHGLQTSVQ
Sbjct: 481 VGTVSADTPPPHHGLQTSVQ 500
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 451 bits (1159), Expect = e-127
Identities = 289/530 (54%), Positives = 311/530 (58%), Gaps = 117/530 (22%)
Query: 1 MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
MATAASN Y + L ++ SIVH++ G GMQ G+
Sbjct: 1 MATAASNHY---SLLTSSASIVHAEPPG---------------------GMQQGA----- 31
Query: 61 GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEAS- 119
G YR S +VQ D+ GA+ ++ GH LSHAHQW+TAL H
Sbjct: 32 GGYREAQS---LVQGDY--GALQSN--GHPLSHAHQWITALSHGGGGGGGGGGGGGGGGG 84
Query: 120 ------SPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRG----- 168
SPWS S +G QP P Q +GG G D+LH AL +
Sbjct: 85 GGGGDGSPWSTSPLG------QPDIKPSVVVQ----QGGRG-DELHGPGALQQQHQQQQQ 133
Query: 169 -----------------PPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAG 211
PPHL H G PG W +AAAAAHLP G
Sbjct: 134 QQQQQQQQQQQQQQQQRPPHLVHHAANHHPG-PGAW----------RSAAAAAHLPPSMG 182
Query: 212 GQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRG-DTPELAEH 270
LLYSQP FTVNGML GAGG L H GL D P A+H
Sbjct: 183 ASNG---GLLYSQPS-FTVNGML-----------GAGGQPAGLHHHGLRDAHDEPHHADH 227
Query: 271 HHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFK 330
H H H H H PP P QGPP H G HDPHSDEDTPTSDDLEQFAKQFK
Sbjct: 228 HPHPHSHPHQQPPPPPPPQGPPGHPGA---------HHDPHSDEDTPTSDDLEQFAKQFK 278
Query: 331 QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS 390
QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS
Sbjct: 279 QRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS 338
Query: 391 TGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVV 450
+GSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEIT+LADSLQLEKEVV
Sbjct: 339 SGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVV 398
Query: 451 RVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHHGLQTSVQ 500
RVWFCNRRQKEKRMTPPG +DVY S DT PPHHG+QT VQ
Sbjct: 399 RVWFCNRRQKEKRMTPPGGTLPGAEDVYGG----SRDT-PPHHGVQTPVQ 443
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 377 bits (968), Expect = e-104
Identities = 253/494 (51%), Positives = 283/494 (57%), Gaps = 144/494 (29%)
Query: 1 MATAASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
MATAASNPY S+L++ S+VH+D+AG MQ GS
Sbjct: 1 MATAASNPY----SILSSTSLVHADSAG----------------------MQQGSP---- 30
Query: 61 GAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASS 120
+R K++QSD++QG + GH L H WVT+L
Sbjct: 31 --FRNPQ---KLLQSDYLQGV---PSNGHPLGH--HWVTSLSDGG--------------- 65
Query: 121 PWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPH 180
PWS + +A SP P GR+DL G +HHR P H+ P H
Sbjct: 66 PWSST---LATSPLDQQDVKP------------GREDLQLGAIIHHRSP-HVAHHSP--H 107
Query: 181 QGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLS----A 236
HP WGA+ A PS+ QP +YSQPG FTV+GML
Sbjct: 108 TNHPNAWGASPAPN------------PSITSSGQPLN---VYSQPG-FTVSGMLEHGGLT 151
Query: 237 PPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGG 296
PP A AQSL HP L + PP HG
Sbjct: 152 PPP-------AAASAQSL-HPVL-----------------------------REPPDHGE 174
Query: 297 GGGGAGPGLNSH--DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV 354
L SH HSDE+TPTSD+LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV
Sbjct: 175 --------LGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNV 226
Query: 355 FSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE 414
FSQTTICRFE LQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE
Sbjct: 227 FSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIE 286
Query: 415 VSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTP 474
VSVKG LE+HFLKCPKP+AQEI++LADSLQLEKEVVRVWFCNRRQKEKRMTPPG QQ P
Sbjct: 287 VSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQ--P 344
Query: 475 DDVYSQVGTVSADT 488
+VYS TV DT
Sbjct: 345 HEVYSH--TVKTDT 356
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 370 bits (951), Expect = e-102
Identities = 251/502 (50%), Positives = 271/502 (53%), Gaps = 101/502 (20%)
Query: 39 GGGGGAGGGGGGMQPGSAAVTSGAYRGDP----SSVKMVQSDFMQGAMAASNGGHMLSHA 94
G GGGAGG G M P +AA + A + ++ + VQ M + GH + A
Sbjct: 11 GPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGAAYREVQK-LMHHEWLGAGAGHPVGLA 69
Query: 95 H-QWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGA 153
H QW LP W+G P G GG
Sbjct: 70 HPQW---LPTGGGGGG-----------DWAGG---------------PHLEHGKAGGGGT 100
Query: 154 GR-DDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHL------ 206
GR DD G H R HQG AA A AA A + A HL
Sbjct: 101 GRADDGGGGGGFHAR----------LVHQG-------AAHAGAAWAQGSTAHHLGPAMSP 143
Query: 207 -PSMAGGQQPPPQSLL----YSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPG--- 258
P +GG QP P L Y GG + GML+A GGGGAG G +H
Sbjct: 144 SPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAA------GGGGAGPGLHHALHEDGHE 197
Query: 259 --LVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDT 316
L P L H H H H H H A H G GGGG+ G HSDED
Sbjct: 198 AQLEPSPPPHLGAHGHAH---GHAHAGGLHAAAAHLHPGAGGGGSSVG-----EHSDEDA 249
Query: 317 PTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKL 376
P+SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKL
Sbjct: 250 PSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKL 309
Query: 377 KPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEI 436
KPLLNKWLEE DSS+GSPT++DKIAAQGRKRKKRTSIEV VKGALESHFLKCPKPSA EI
Sbjct: 310 KPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEI 369
Query: 437 TNLADSLQLEKEVVRVWFCNRRQKEKRMTP-PGIQQQTPDDVYSQ---------VGTVSA 486
T LADSLQLEKEVVRVWFCNRRQKEKRMTP G DDVY+ SA
Sbjct: 370 TGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSA 429
Query: 487 DTPPP--------HHGLQTSVQ 500
PPP HH L SVQ
Sbjct: 430 PPPPPPAALHHHHHHTLPGSVQ 451
Score = 49.3 bits (116), Expect = 8e-06
Identities = 64/206 (31%), Positives = 72/206 (34%), Gaps = 51/206 (24%)
Query: 21 IVHSDAAGAGGGGGG------------GGGGGGGGA--GGGGGGMQPGSAAVTSGAYRGD 66
+ H GGGGGG GGGG G A GGGGGG + V GA
Sbjct: 68 LAHPQWLPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFH--ARLVHQGAAHAG 125
Query: 67 PSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSA 126
+ + + + AM+ S G S HQ P A AA G
Sbjct: 126 AAWAQGSTAHHLGPAMSPSPGA---SGGHQ-----PQPLGLYAQAAYP--------GGGG 169
Query: 127 VGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGG 186
G+AG GG LH ALH G P PPPH G
Sbjct: 170 GGLAGMLA--------------AGGGGAGPGLH--HALHEDGHEAQLEPSPPPHL---GA 210
Query: 187 WGAAAAAAAAAAAAAAAAHLPSMAGG 212
G A A A AAAAHL AGG
Sbjct: 211 HGHAHGHAHAGGLHAAAAHLHPGAGG 236
Score = 39.3 bits (90), Expect = 0.008
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 22/115 (19%)
Query: 22 VHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGA 81
+++ AA GGGGGG G G GG G G+ + D +
Sbjct: 158 LYAQAAYPGGGGGGLAGMLAAGGGGAGPGLH------------------HALHEDGHEAQ 199
Query: 82 MAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQP 136
+ S H+ +H H A HA A AAAA + + GS+VG P
Sbjct: 200 LEPSPPPHLGAHGH----AHGHAHAGGLHAAAAHLHPGAGGGGSSVGEHSDEDAP 250
Score = 37.7 bits (86), Expect = 0.025
Identities = 32/100 (32%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 237 PPGPGGGGGGAG-------------GGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPP 283
P GPGGG GG G A +H G + +L HH HP
Sbjct: 9 PRGPGGGAGGTGPLMHPDAAAAAAAAAAAERLHAGAAYREVQKLM--HHEWLGAGAGHPV 66
Query: 284 HPHHAQGPPHHGGGGG--GAGPGLNSHDPHSDEDTPTSDD 321
H Q P GGGGG GP L H T +DD
Sbjct: 67 GLAHPQWLPTGGGGGGDWAGGPHL-EHGKAGGGGTGRADD 105
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 206 bits (525), Expect = 3e-53
Identities = 106/166 (63%), Positives = 128/166 (77%), Gaps = 7/166 (4%)
Query: 309 DPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQL 368
D S E+ ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL L
Sbjct: 275 DTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNL 334
Query: 369 SFKNMCKLKPLLNKWLEEA-----DSSTGSPTSIDKIAAQG--RKRKKRTSIEVSVKGAL 421
SFKNMCKLKPLL KWL +A DSS SP++++ +G R+RKKRTSIE +++ AL
Sbjct: 335 SFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVAL 394
Query: 422 ESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPP 467
E FL+ KP+++EIT +AD L +EKEV+RVWFCNRRQKEKR+ PP
Sbjct: 395 EKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPP 440
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 202 bits (514), Expect = 6e-52
Identities = 126/259 (48%), Positives = 154/259 (59%), Gaps = 39/259 (15%)
Query: 246 GAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAGPGL 305
G G +Q+ HPGL G + E H A H P P H P GG
Sbjct: 142 GPGLASQAFGHPGLP-GSSLE-------PHLEASQHLPVPKHL---PSSGGA-------- 182
Query: 306 NSHDPHSDEDTPTS-DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 364
D P+ ++LE+FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFE
Sbjct: 183 ---------DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 233
Query: 365 ALQLSFKNMCKLKPLLNKWLEEADS-----STGSPTSIDKIA-AQGRKRKKRTSIEVSVK 418
AL LSFKNMCKLKPLL KWL +A+S S +P+S ++ GRKRKKRTSIE +++
Sbjct: 234 ALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIR 293
Query: 419 GALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTP---- 474
LE F PKPS++EI+ +A+ L +EKEVVRVWFCNRRQKEKR+ P P
Sbjct: 294 LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPIKPPVYN 353
Query: 475 DDVYSQVGTVSADTPPPHH 493
+ S G++ + PP H
Sbjct: 354 SRLVSPSGSLGPLSVPPVH 372
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 194 bits (494), Expect = 1e-49
Identities = 102/167 (61%), Positives = 121/167 (72%), Gaps = 10/167 (5%)
Query: 310 PHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLS 369
P E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LS
Sbjct: 175 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 234
Query: 370 FKNMCKLKPLLNKWLEEA-----DSSTGSPTSIDKIA-----AQGRKRKKRTSIEVSVKG 419
FKNMCKLKPLL KWL +A DSS SP + + GR+RKKRTSIE +V+
Sbjct: 235 FKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRF 294
Query: 420 ALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTP 466
ALE FL KP+++EI +A+ L +EKEV+RVWFCNRRQKEKR+ P
Sbjct: 295 ALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINP 341
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 190 bits (483), Expect = 2e-48
Identities = 103/193 (53%), Positives = 129/193 (66%), Gaps = 3/193 (1%)
Query: 305 LNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 364
L + S + +LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQTTICRFE
Sbjct: 129 LEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFE 188
Query: 365 ALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESH 424
ALQLSFKNMCKL+PLL KW+EEAD++ +++KRTSIE V+G LE+
Sbjct: 189 ALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENL 248
Query: 425 FLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQV--G 482
FL+CPKP+ Q+I+++A L LEK+VVRVWFCNRRQK KR + Q++ + S G
Sbjct: 249 FLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGG 308
Query: 483 TVSAD-TPPPHHG 494
VS P PH G
Sbjct: 309 PVSFPLAPGPHFG 321
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 189 bits (481), Expect = 4e-48
Identities = 101/177 (57%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
Query: 321 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 380
+LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQTTICRFEALQLSFKNMCKL+PLL
Sbjct: 50 ELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLL 109
Query: 381 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLA 440
KW+EEAD++ +++KRTSIE V+G LE+ FL+CPKP+ Q+I+++A
Sbjct: 110 QKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIA 169
Query: 441 DSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQV--GTVSAD-TPPPHHG 494
L LEK+VVRVWFCNRRQK KR + Q++ + S G VS P PH G
Sbjct: 170 QQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFG 226
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 183 bits (465), Expect = 3e-46
Identities = 100/190 (52%), Positives = 125/190 (65%), Gaps = 5/190 (2%)
Query: 309 DPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 367
+P +D +LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQ TICRFEALQ
Sbjct: 132 NPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQ 191
Query: 368 LSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLK 427
LSFKNMCKL+PLL KW+EEAD++ +++KRTSIE V+G LE+ FL+
Sbjct: 192 LSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQ 251
Query: 428 CPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSAD 487
CPKP+ Q I+++A L LEK+VVRVWFCNRRQK KR + Q++ + S
Sbjct: 252 CPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVS 310
Query: 488 TPP---PHHG 494
PP PH G
Sbjct: 311 FPPAPGPHFG 320
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 181 bits (459), Expect = 1e-45
Identities = 92/152 (60%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Query: 313 DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN 372
D D+P +LE+FA +FK RRIKLG+TQ +VG AL ++G+ FSQTTICRFE LQLSFKN
Sbjct: 149 DMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKN 208
Query: 373 MCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 432
CKLK +L+KWLEEA+ G+ + +K+ A RKRK+RT+I ++ K ALE HF + KPS
Sbjct: 209 ACKLKAILSKWLEEAE-QVGALYN-EKVGANERKRKRRTTISIAAKDALERHFGEQNKPS 266
Query: 433 AQEITNLADSLQLEKEVVRVWFCNRRQKEKRM 464
+QEI +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 267 SQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 298
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 181 bits (459), Expect = 1e-45
Identities = 92/152 (60%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Query: 313 DEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN 372
D D+P +LE+FA +FK RRIKLG+TQ +VG AL ++G+ FSQTTICRFE LQLSFKN
Sbjct: 123 DMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKN 182
Query: 373 MCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPS 432
CKLK +L+KWLEEA+ G+ + +K+ A RKRK+RT+I ++ K ALE HF + KPS
Sbjct: 183 ACKLKAILSKWLEEAE-QVGALYN-EKVGANERKRKRRTTISIAAKDALERHFGEQNKPS 240
Query: 433 AQEITNLADSLQLEKEVVRVWFCNRRQKEKRM 464
+QEI +A+ L LEKEVVRVWFCNRRQ+EKR+
Sbjct: 241 SQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 272
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 179 bits (453), Expect = 7e-45
Identities = 126/329 (38%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 165 HHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQ 224
HH L P H P A A A AAA AH GG P
Sbjct: 104 HHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAH-DGPGGGGGPGGGGGPGGG 162
Query: 225 PGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHP-- 282
PGG GPGGGGGG GGG + G + H H H +HP
Sbjct: 163 PGG-------GGGGGPGGGGGGPGGG---------LLGGSAHPHPHMHSLGHLSHPAAAA 206
Query: 283 --------PHPHHAQGPPHHGGGGGGAGPGLNSHDPHS---------------DEDTPTS 319
PHP HHG A S D DT
Sbjct: 207 AMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPR 266
Query: 320 DDLEQFAKQFKQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCK 375
+ LE FA++FKQRRIKLG TQADVG AL L G++ SQ+TICRFE+L LS NM
Sbjct: 267 E-LEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSL-SQSTICRFESLTLSHNNMIA 324
Query: 376 LKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQE 435
LKP+L WLEEA+ + + ++ G K++KRTSI K +LE++F P+PS+++
Sbjct: 325 LKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEK 384
Query: 436 ITNLADSLQLEKEVVRVWFCNRRQKEKRM 464
I +A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 385 IAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413
Score = 69.3 bits (168), Expect = 8e-12
Identities = 50/123 (40%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 12 GNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVK 71
G + AAG D G GGG GGGGG GGG GGGGGG G G G
Sbjct: 132 GGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHP 191
Query: 72 MVQS---DFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVG 128
+ S A AA N L H A H AAAAAAAAAA A++ + + VG
Sbjct: 192 HMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVG 251
Query: 129 MAG 131
AG
Sbjct: 252 AAG 254
Score = 42.4 bits (98), Expect = 0.001
Identities = 44/126 (34%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 88 GHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGP 147
G +L H AL A A AAA P G G G P P GP
Sbjct: 114 GDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGG--GP 171
Query: 148 DVKGGAGRDDLHAGTALHH---RGPPHLGPPPP------PPHQGHPGGWGAAAAAAAAAA 198
GG L G+A H HL P P HPG AAA AAAA
Sbjct: 172 GGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAA 231
Query: 199 AAAAAA 204
AAAAAA
Sbjct: 232 AAAAAA 237
Score = 38.1 bits (87), Expect = 0.019
Identities = 24/66 (36%), Positives = 24/66 (36%), Gaps = 25/66 (37%)
Query: 264 TPELAEHHHHHHHHAH-------PHPPHPHHA------------------QGPPHHGGGG 298
T LA HHHHHHHH H P A GP GG G
Sbjct: 95 TVPLAHHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPG 154
Query: 299 GGAGPG 304
GG GPG
Sbjct: 155 GGGGPG 160
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 178 bits (451), Expect = 1e-44
Identities = 136/417 (32%), Positives = 182/417 (43%), Gaps = 58/417 (13%)
Query: 90 MLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVG-MAGSPQQPPQPPPPPPQGPD 148
M+S + ++PH + +A+ ++SP S + + A SP G
Sbjct: 3 MMSLNSKQAFSMPHGGSLHVEPKYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGGGG 62
Query: 149 VKGGAGRDDLHAGTALHHRGPPHLGPPP--PPPHQGHPGGWGAAAAAAAAAAAAAAAAHL 206
GG GR + + G P P GG + A A A AA
Sbjct: 63 GGGGGGRSSSSSSSGSSGGGGSEAMRRACLPTPPSNIFGGLDESLLARAEALAAVDIVS- 121
Query: 207 PSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPE 266
S + PP S T+N + A + + HP + G
Sbjct: 122 QSKSHHHHPPHHSPFKPDATYHTMNTIPCT--------SAASSSSVPISHPSALAGT--- 170
Query: 267 LAEHHHHHHHHAHPHPPH----------------------------------PHHA-QGP 291
HHHHHHHH H H PH PH A P
Sbjct: 171 ---HHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMATMNP 227
Query: 292 PHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL- 350
H GL SH + DLE FA++FKQRRIKLG TQADVG AL L
Sbjct: 228 MHQAALSMAHAHGLPSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLK 287
Query: 351 ---YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKR 407
G++ SQ+TICRFE+L LS NM LKP+L WLEEA+ S + ++ K+
Sbjct: 288 IPGVGSL-SQSTICRFESLTLSHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKK 346
Query: 408 KKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRM 464
+KRTSI K +LE++F P+PS+++I +A+ L L+K VVRVWFCN+RQK+KRM
Sbjct: 347 RKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 403
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 11 PGNSL-LAAGSIVHSDAAGAGGGGGGGGGGGGGG--------AGGGGGGMQPGSAAVTSG 61
PG+S +A + S ++ AGGGGGGGGGGGGGG +G GGG GS A+
Sbjct: 34 PGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGG---GSEAMRRA 90
Query: 62 AYRGDPSSV 70
PS++
Sbjct: 91 CLPTPPSNI 99
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 154 bits (390), Expect = 1e-37
Identities = 91/199 (45%), Positives = 122/199 (61%), Gaps = 13/199 (6%)
Query: 276 HHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSD------DLEQFAKQF 329
H P HPHH H G + P ++ PHS SD +LE FA++F
Sbjct: 137 HSVMPAQIHPHHLGAMGHLHQAMGMSHP--HTVAPHSAMPACLSDVESDPRELEAFAERF 194
Query: 330 KQRRIKLGFTQADVGLALGTL----YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLE 385
KQRRIKLG TQADVG AL L G++ SQ+TICRFE+L LS NM LKP+L WLE
Sbjct: 195 KQRRIKLGVTQADVGAALANLKIPGVGSL-SQSTICRFESLTLSHNNMIALKPVLQAWLE 253
Query: 386 EADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQL 445
EA+++ S ++ +++KRTSI K +LE++F P+PS+++I +A+ L L
Sbjct: 254 EAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDL 313
Query: 446 EKEVVRVWFCNRRQKEKRM 464
+K VVRVWFCN+RQK+KRM
Sbjct: 314 KKNVVRVWFCNQRQKQKRM 332
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 142 bits (359), Expect = 5e-34
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 321 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 380
+L+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFEA QLS NM KL+PLL
Sbjct: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
Query: 381 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLA 440
KWL+E ++ ++ Q + +R S E + +LE F +CPKP+ Q+I+++A
Sbjct: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
Query: 441 DSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHH 493
LQL+K+VVRVWF NR + R T +P ++ G P H
Sbjct: 245 GCLQLQKDVVRVWFYNRSKMGSRPT----NDASPREIVGTAGPPCPGAPVCFH 293
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 135 bits (341), Expect = 7e-32
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Query: 308 HDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 367
H P DED +++ +FAK FK RR+ LG TQ VG AL G +SQ+ ICRFE L
Sbjct: 133 HTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLD 192
Query: 368 LSFKNMCKLKPLLNKWLEEAD--SSTGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESH 424
++ K+ KLKP+L KWL EA+ + G ++ + + +KRK+RTS AL ++
Sbjct: 193 ITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAY 252
Query: 425 FLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQ 471
F K P P+ QEIT +A L ++EVVRVWFCNRRQ K + + Q
Sbjct: 253 FEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQ 299
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 105 bits (261), Expect = 1e-22
Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 40/208 (19%)
Query: 306 NSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICR--- 362
N + D +++ +FAK FK RR+ LG TQ VG AL G +SQ+ ICR
Sbjct: 468 NPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTI 527
Query: 363 ---------------------------------FEALQLSFKNMCKLKPLLNKWLEEADS 389
FE L ++ K+ K+KP+L +W+ EA++
Sbjct: 528 LRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEA 587
Query: 390 S--TGSPTSIDKIAAQ-GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLE 446
G + I ++ +KRK+RTS L +HF K PS QE+T +A+ L +
Sbjct: 588 RHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYD 647
Query: 447 KEVVRVWFCNRRQKEKRMTPPGIQQQTP 474
+EVVRVWFCN+RQ K T ++Q P
Sbjct: 648 REVVRVWFCNKRQALKN-TIKRLKQHEP 674
Score = 33.5 bits (75), Expect = 0.46
Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 136 PPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAA 195
P Q PPQ P G G P L PP P +P AAAAAAA
Sbjct: 265 PTQQSSSPPQKPSQSPGHGL-------------PSPLTPPNPLQLVNNPLASQAAAAAAA 311
Query: 196 AAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLV 255
++ A++ A +++ Q Q + +Q + G + P PG A G V
Sbjct: 312 MSSIASSQAFGNALSSLQGVTGQLVTNAQG---QIIGTIPLMPNPGPSSQAASGTQGLQV 368
Query: 256 HP 257
P
Sbjct: 369 QP 370
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 87.4 bits (215), Expect = 3e-17
Identities = 123/496 (24%), Positives = 180/496 (36%), Gaps = 92/496 (18%)
Query: 11 PGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSV 70
PG L AG D G GGGGG GG GG G AGGG +RG+ +
Sbjct: 41 PGRPGLVAGMASLLDGGGGGGGGGAGGAGGAGSAGGGAD-------------FRGELAGP 87
Query: 71 KMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAA-----AAAAVEASSPWSGS 125
+ AM + L + +T L H AA A AAA + G
Sbjct: 88 -------LHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGH 140
Query: 126 AVGMAGSPQQPPQPPPPPPQGPDVKGG--AGRDDLHAGTALHH-RGP-----PHLGPP-P 176
PP PPPP V G RD+ A ++ H GP P +G P
Sbjct: 141 PHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLS 200
Query: 177 PPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ--PP----PQSLLYSQPGGFTV 230
P P+ P GA AA P G + PP P + L +
Sbjct: 201 PLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALA 260
Query: 231 NGMLSAPPGPGGGGGGAGGGAQSLVHPGLVR--GDTPELAEHHHHHHHHAHPHPPHPHHA 288
G+ PGGGGG GGA S GL+ G H
Sbjct: 261 RGL------PGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAH------------------ 296
Query: 289 QGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKLG-FTQADVGLAL 347
GP HGGGGG G G + E+ T + ++ + K+ I F Q + +
Sbjct: 297 -GP--HGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQ 353
Query: 348 GTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKR 407
GTL + + + ++ + +F+ M KWL+E + S + + +++
Sbjct: 354 GTLSDLLRNPKPWSKLKSGRETFRRMW-------KWLQEPEFQRMSALRLAACKRKEQEQ 406
Query: 408 KKRTSIEVS---------VKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRR 458
+K +++ + L + F + +PS + ++ L LE V +F N R
Sbjct: 407 QKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNAR 466
Query: 459 QK------EKRMTPPG 468
++ E+ T PG
Sbjct: 467 RRCMNRWAEEPSTAPG 482
Score = 34.7 bits (78), Expect = 0.21
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 58/139 (41%)
Query: 198 AAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSL--- 254
A +AAA H +A G+ PG V GM S G GGGGGG GGA
Sbjct: 28 ARSAAAQHRGLVAPGR-----------PG--LVAGMASLLDGGGGGGGGGAGGAGGAGSA 74
Query: 255 -------------VHPGL-VRGDTPEL-------------------AEHHHHH------- 274
+HP + + + P L A+ H H
Sbjct: 75 GGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVA 134
Query: 275 -HHHAHPHPPHPHHAQGPP 292
H HPH HPH A PP
Sbjct: 135 GAHGGHPH-AHPHPAAAPP 152
Score = 30.8 bits (68), Expect = 3.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 4 AASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGA 44
+A+ P L AAG+ H G GG GG GGG G A
Sbjct: 279 SAAGLLAPLGGLAAAGA--HGPHGGGGGPGGSGGGPSAGAA 317
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 82.0 bits (201), Expect = 1e-15
Identities = 81/269 (30%), Positives = 104/269 (38%), Gaps = 24/269 (8%)
Query: 28 GAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNG 87
GAGGGGGGGGGGGGG GGGGGG G+ +GA ++ G S+
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGG-GAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 88 GH-MLSHAHQWVTAL---PHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPP 143
G+ +LS Q + P AA+ + AAA A +G AG Q P P
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA----AGGFQRFAGQNQHPSGATPTL 361
Query: 144 PQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAA 203
Q R + G+ + P PPPPP Q P AAA AAA AAA
Sbjct: 362 NQLLTSPSPMMRS--YGGSYPEYSSP---SAPPPPPSQ--PQSQAAAAGAAAGGQQAAAG 414
Query: 204 AHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGD 263
L G Q + P PG G G S + P +++
Sbjct: 415 MGLGKDMGAQYAA------ASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMK-- 466
Query: 264 TPELAEHHHHHHHHAHPHPPHPHHAQGPP 292
P+L + H P+P + GPP
Sbjct: 467 RPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 36/202 (17%)
Query: 123 SGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPP----PPP 178
+ +++G AG P P PQ GGA D AG GPP L P P
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQ----HGGA--KDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 179 PHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPP 238
P G P G A +P GG P+ Y SA P
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYG----------SAAP 181
Query: 239 GPGGGGGGAG------GGAQS----LVHP------GLVRGDTPELAEHHHHHHHHAHPHP 282
GG GG AG GG QS ++H G P H + + + +P
Sbjct: 182 ASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYP 241
Query: 283 PHPHHAQGPPHHGGGGGGAGPG 304
+ G GGGGGG G G
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSG 263
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 265 PELAEHHHHH--HHHAHPHPPHPHHA 288
P HHHHH HHH H H H HHA
Sbjct: 22 PHQQHHHHHHAHHHHHHAHHLHHHHA 47
Score = 38.9 bits (89), Expect = 0.011
Identities = 47/179 (26%), Positives = 55/179 (30%), Gaps = 38/179 (21%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A + P G A A Q P PP + D + AG H
Sbjct: 85 AGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEH 144
Query: 167 RGPPHLGPPPPPPHQGHPGGWGAAAA-----------AAAAAAAAAAAAHLPSMAGGQQP 215
G LG PP PGG G AA A A+ A GGQQ
Sbjct: 145 PGLGALGTQQPPV--AVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQS 202
Query: 216 PPQSLLYSQ-------PGGFTV---------NGMLSAPPG---------PGGGGGGAGG 249
P +++S PG N + PG GGGGGG GG
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Score = 37.4 bits (85), Expect = 0.032
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 262 GDTPELAEHHH-HHHHHAHPHPPHPHHAQGPPHH 294
G+ P H HHHHHAH H H HH HH
Sbjct: 15 GEAPAAPPHQQHHHHHHAHHHHHHAHHLH---HH 45
Score = 36.2 bits (82), Expect = 0.071
Identities = 42/138 (30%), Positives = 49/138 (35%), Gaps = 30/138 (21%)
Query: 173 GPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNG 232
G P P P P GA +AA GGQ PP L S+PG
Sbjct: 88 GAPQPGPDMEQPQHGGAKDSAA----------------GGQADPPGPPLLSKPGDED--- 128
Query: 233 MLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDT--PELAEHHHHHHHHAHPHPPHPHHAQG 290
APP G GG HPGL T P +A A P + ++
Sbjct: 129 --DAPPKMGEPAGGR------YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNN-YYGSA 179
Query: 291 PPHHGGGGGGAGPGLNSH 308
P GG GG AGP + H
Sbjct: 180 APASGGPGGRAGPCFDQH 197
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/150 (26%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 110 AAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGG---------AGRDDLHA 160
A ++AV AS S S+ G +P Q P P P + GG G + +
Sbjct: 636 ATLSSAVSASG--STSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRS 693
Query: 161 GTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAA--AAAAHLPSMA--GGQQPP 216
G P PP PP Q A + + A P MA G QQ
Sbjct: 694 GPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTG 753
Query: 217 PQSLLYSQPGGFTVNGMLSAPPGPGGGGGG 246
P + PGG G+ S G G
Sbjct: 754 PSMSPHPSPGGQMHAGISSFQQSNSSGTYG 783
Score = 30.4 bits (67), Expect = 3.9
Identities = 40/161 (24%), Positives = 56/161 (34%), Gaps = 17/161 (10%)
Query: 75 SDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQ 134
S F Q + + G M + Q + P A + +A+ P G + Q
Sbjct: 771 SSFQQSNSSGTYGPQMSQYGPQGNYSRP---PAYSGVPSASYSGPGPGMGISANNQMHGQ 827
Query: 135 QPPQPPPPPPQGPDVKGGAGRDDLHAGTA--------LHHRGPPHLGPPPPPPHQGHPGG 186
P QP P G G + + +G P +GPP P ++
Sbjct: 828 GPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQ-- 885
Query: 187 WGAAAAAAAAAAAAAAAAHLPSMAGGQQP--PPQSLLYSQP 225
AAAA AAA +A + S G Q S YSQP
Sbjct: 886 --EAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQP 924
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 82.0 bits (201), Expect = 1e-15
Identities = 81/269 (30%), Positives = 104/269 (38%), Gaps = 24/269 (8%)
Query: 28 GAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNG 87
GAGGGGGGGGGGGGG GGGGGG G+ +GA ++ G S+
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGG-GAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 88 GH-MLSHAHQWVTAL---PHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPP 143
G+ +LS Q + P AA+ + AAA A +G AG Q P P
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA----AGGFQRFAGQNQHPSGATPTL 361
Query: 144 PQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAA 203
Q R + G+ + P PPPPP Q P AAA AAA AAA
Sbjct: 362 NQLLTSPSPMMRS--YGGSYPEYSSP---SAPPPPPSQ--PQSQAAAAGAAAGGQQAAAG 414
Query: 204 AHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGD 263
L G Q + P PG G G S + P +++
Sbjct: 415 MGLGKDMGAQYAA------ASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMK-- 466
Query: 264 TPELAEHHHHHHHHAHPHPPHPHHAQGPP 292
P+L + H P+P + GPP
Sbjct: 467 RPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 36/202 (17%)
Query: 123 SGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPP----PPP 178
+ +++G AG P P PQ GGA D AG GPP L P P
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQ----HGGA--KDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 179 PHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPP 238
P G P G A +P GG P+ Y SA P
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYG----------SAAP 181
Query: 239 GPGGGGGGAG------GGAQS----LVHP------GLVRGDTPELAEHHHHHHHHAHPHP 282
GG GG AG GG QS ++H G P H + + + +P
Sbjct: 182 ASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYP 241
Query: 283 PHPHHAQGPPHHGGGGGGAGPG 304
+ G GGGGGG G G
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSG 263
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 265 PELAEHHHHH--HHHAHPHPPHPHHA 288
P HHHHH HHH H H H HHA
Sbjct: 22 PHQQHHHHHHAHHHHHHAHHLHHHHA 47
Score = 38.9 bits (89), Expect = 0.011
Identities = 47/179 (26%), Positives = 55/179 (30%), Gaps = 38/179 (21%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A + P G A A Q P PP + D + AG H
Sbjct: 85 AGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEH 144
Query: 167 RGPPHLGPPPPPPHQGHPGGWGAAAA-----------AAAAAAAAAAAAHLPSMAGGQQP 215
G LG PP PGG G AA A A+ A GGQQ
Sbjct: 145 PGLGALGTQQPPV--AVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQS 202
Query: 216 PPQSLLYSQ-------PGGFTV---------NGMLSAPPG---------PGGGGGGAGG 249
P +++S PG N + PG GGGGGG GG
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Score = 37.4 bits (85), Expect = 0.032
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 262 GDTPELAEHHH-HHHHHAHPHPPHPHHAQGPPHH 294
G+ P H HHHHHAH H H HH HH
Sbjct: 15 GEAPAAPPHQQHHHHHHAHHHHHHAHHLH---HH 45
Score = 36.2 bits (82), Expect = 0.071
Identities = 42/138 (30%), Positives = 49/138 (35%), Gaps = 30/138 (21%)
Query: 173 GPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNG 232
G P P P P GA +AA GGQ PP L S+PG
Sbjct: 88 GAPQPGPDMEQPQHGGAKDSAA----------------GGQADPPGPPLLSKPGDED--- 128
Query: 233 MLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDT--PELAEHHHHHHHHAHPHPPHPHHAQG 290
APP G GG HPGL T P +A A P + ++
Sbjct: 129 --DAPPKMGEPAGGR------YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNN-YYGSA 179
Query: 291 PPHHGGGGGGAGPGLNSH 308
P GG GG AGP + H
Sbjct: 180 APASGGPGGRAGPCFDQH 197
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/150 (26%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 110 AAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGG---------AGRDDLHA 160
A ++AV AS S S+ G +P Q P P P + GG G + +
Sbjct: 623 ATLSSAVSASG--STSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRS 680
Query: 161 GTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAA--AAAAHLPSMA--GGQQPP 216
G P PP PP Q A + + A P MA G QQ
Sbjct: 681 GPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTG 740
Query: 217 PQSLLYSQPGGFTVNGMLSAPPGPGGGGGG 246
P + PGG G+ S G G
Sbjct: 741 PSMSPHPSPGGQMHAGISSFQQSNSSGTYG 770
Score = 30.4 bits (67), Expect = 3.9
Identities = 40/161 (24%), Positives = 56/161 (34%), Gaps = 17/161 (10%)
Query: 75 SDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQ 134
S F Q + + G M + Q + P A + +A+ P G + Q
Sbjct: 758 SSFQQSNSSGTYGPQMSQYGPQGNYSRP---PAYSGVPSASYSGPGPGMGISANNQMHGQ 814
Query: 135 QPPQPPPPPPQGPDVKGGAGRDDLHAGTA--------LHHRGPPHLGPPPPPPHQGHPGG 186
P QP P G G + + +G P +GPP P ++
Sbjct: 815 GPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQ-- 872
Query: 187 WGAAAAAAAAAAAAAAAAHLPSMAGGQQP--PPQSLLYSQP 225
AAAA AAA +A + S G Q S YSQP
Sbjct: 873 --EAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQP 911
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 82.0 bits (201), Expect = 1e-15
Identities = 81/269 (30%), Positives = 104/269 (38%), Gaps = 24/269 (8%)
Query: 28 GAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNG 87
GAGGGGGGGGGGGGG GGGGGG G+ +GA ++ G S+
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGG-GAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 88 GH-MLSHAHQWVTAL---PHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPP 143
G+ +LS Q + P AA+ + AAA A +G AG Q P P
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSA----AGGFQRFAGQNQHPSGATPTL 361
Query: 144 PQGPDVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAA 203
Q R + G+ + P PPPPP Q P AAA AAA AAA
Sbjct: 362 NQLLTSPSPMMRS--YGGSYPEYSSP---SAPPPPPSQ--PQSQAAAAGAAAGGQQAAAG 414
Query: 204 AHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGD 263
L G Q + P PG G G S + P +++
Sbjct: 415 MGLGKDMGAQYAA------ASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMK-- 466
Query: 264 TPELAEHHHHHHHHAHPHPPHPHHAQGPP 292
P+L + H P+P + GPP
Sbjct: 467 RPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/202 (27%), Positives = 69/202 (34%), Gaps = 36/202 (17%)
Query: 123 SGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGPP----PPP 178
+ +++G AG P P PQ GGA D AG GPP L P P
Sbjct: 78 NNNSLGGAGGGAPQPGPDMEQPQ----HGGA--KDSAAGGQADPPGPPLLSKPGDEDDAP 131
Query: 179 PHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAPP 238
P G P G A +P GG P+ Y SA P
Sbjct: 132 PKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYG----------SAAP 181
Query: 239 GPGGGGGGAG------GGAQS----LVHP------GLVRGDTPELAEHHHHHHHHAHPHP 282
GG GG AG GG QS ++H G P H + + + +P
Sbjct: 182 ASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYP 241
Query: 283 PHPHHAQGPPHHGGGGGGAGPG 304
+ G GGGGGG G G
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSG 263
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 265 PELAEHHHHH--HHHAHPHPPHPHHA 288
P HHHHH HHH H H H HHA
Sbjct: 22 PHQQHHHHHHAHHHHHHAHHLHHHHA 47
Score = 38.9 bits (89), Expect = 0.011
Identities = 47/179 (26%), Positives = 55/179 (30%), Gaps = 38/179 (21%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A + P G A A Q P PP + D + AG H
Sbjct: 85 AGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEH 144
Query: 167 RGPPHLGPPPPPPHQGHPGGWGAAAA-----------AAAAAAAAAAAAHLPSMAGGQQP 215
G LG PP PGG G AA A A+ A GGQQ
Sbjct: 145 PGLGALGTQQPPV--AVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQS 202
Query: 216 PPQSLLYSQ-------PGGFTV---------NGMLSAPPG---------PGGGGGGAGG 249
P +++S PG N + PG GGGGGG GG
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGG 261
Score = 37.4 bits (85), Expect = 0.032
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 262 GDTPELAEHHH-HHHHHAHPHPPHPHHAQGPPHH 294
G+ P H HHHHHAH H H HH HH
Sbjct: 15 GEAPAAPPHQQHHHHHHAHHHHHHAHHLH---HH 45
Score = 36.2 bits (82), Expect = 0.071
Identities = 42/138 (30%), Positives = 49/138 (35%), Gaps = 30/138 (21%)
Query: 173 GPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNG 232
G P P P P GA +AA GGQ PP L S+PG
Sbjct: 88 GAPQPGPDMEQPQHGGAKDSAA----------------GGQADPPGPPLLSKPGDED--- 128
Query: 233 MLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDT--PELAEHHHHHHHHAHPHPPHPHHAQG 290
APP G GG HPGL T P +A A P + ++
Sbjct: 129 --DAPPKMGEPAGGR------YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNN-YYGSA 179
Query: 291 PPHHGGGGGGAGPGLNSH 308
P GG GG AGP + H
Sbjct: 180 APASGGPGGRAGPCFDQH 197
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/150 (26%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 110 AAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGG---------AGRDDLHA 160
A ++AV AS S S+ G +P Q P P P + GG G + +
Sbjct: 623 ATLSSAVSASG--STSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRS 680
Query: 161 GTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAA--AAAAHLPSMA--GGQQPP 216
G P PP PP Q A + + A P MA G QQ
Sbjct: 681 GPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTG 740
Query: 217 PQSLLYSQPGGFTVNGMLSAPPGPGGGGGG 246
P + PGG G+ S G G
Sbjct: 741 PSMSPHPSPGGQMHAGISSFQQSNSSGTYG 770
Score = 30.4 bits (67), Expect = 3.9
Identities = 40/161 (24%), Positives = 56/161 (34%), Gaps = 17/161 (10%)
Query: 75 SDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQ 134
S F Q + + G M + Q + P A + +A+ P G + Q
Sbjct: 758 SSFQQSNSSGTYGPQMSQYGPQGNYSRP---PAYSGVPSASYSGPGPGMGISANNQMHGQ 814
Query: 135 QPPQPPPPPPQGPDVKGGAGRDDLHAGTA--------LHHRGPPHLGPPPPPPHQGHPGG 186
P QP P G G + + +G P +GPP P ++
Sbjct: 815 GPSQPCGAVPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQ-- 872
Query: 187 WGAAAAAAAAAAAAAAAAHLPSMAGGQQP--PPQSLLYSQP 225
AAAA AAA +A + S G Q S YSQP
Sbjct: 873 --EAAAAVMQAAANSAQSRQGSFPGMNQSGLMASSSPYSQP 911
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 80.9 bits (198), Expect = 3e-15
Identities = 94/352 (26%), Positives = 117/352 (33%), Gaps = 64/352 (18%)
Query: 5 ASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGG--------------GGAGGGGGG 50
A P G S AG+ + A GGGG GGGGGG GG G GG
Sbjct: 343 AGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGG 402
Query: 51 M----QPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAA 106
P S A G P++ + + A GG S P A
Sbjct: 403 ATRPPPPRSTATPKCQSLGGPAAAYATG----KASGAGGAGGQAYSPGQPQGLLGPQAYG 458
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPP------PQGPDVKGG---AGRDD 157
A + +P +G P QPP PPPP PD G + +
Sbjct: 459 QGFGGGQAQDLSKAP------SYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGE 512
Query: 158 LHAGTALHHRGPPHLGPP------PPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAG 211
+ G A H +G P P P GH GGWG ++ A+ +
Sbjct: 513 PYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPP 572
Query: 212 GQQPPPQSLLYSQPGGFTVNGMLS----APPGPGGGGGGAGG------GAQSLVHPGLVR 261
PP PG + + + S APPG G GAGG G++ L PG
Sbjct: 573 ATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGGPP 632
Query: 262 GDTPELAEHHHHHHHHAHPHPPHPHHAQG----------PPHHGGGGGGAGP 303
+ E E H A P PP A G GG GG GP
Sbjct: 633 AERTEDEEFLIQHLLQA-PSPPRTSGADGLVGEDGAADASKGLGGSGGAGGP 683
Score = 55.8 bits (133), Expect = 9e-08
Identities = 50/152 (32%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A+++AAAAA E SSP + G A P PPPP P R D T + H
Sbjct: 249 ASSSAAAAAAEQSSPQLYNFSGAA------PGPPPPERALP-------RQD----TVIKH 291
Query: 167 RGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMA----GGQQPPPQSLLY 222
P PPPPP H A + + + H ++A GG +P P +
Sbjct: 292 YQRPASAQPPPPPPPAH-----ALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEP 346
Query: 223 SQ--PGGFT--VNGMLSAPPGPGGGGGGAGGG 250
S+ P G T +G + P GGGG G GGG
Sbjct: 347 SKAGPSGATAGASGRATGPEAAGGGGAGGGGG 378
Score = 45.4 bits (106), Expect = 1e-04
Identities = 63/248 (25%), Positives = 92/248 (37%), Gaps = 47/248 (18%)
Query: 100 ALPHAAAAAAAAAAAAVEASSPWSGSA--VGMAGSPQQPPQPPPP-------------PP 144
ALP ++ +++A +A + + + V + S Q PP PP P
Sbjct: 135 ALPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPS 194
Query: 145 QGPDVKGGAGRDDLHAGTALHHRG------PPHL-GPP-PPPPHQGHPGGWGAAAAAAAA 196
Q P V G + L G L G PP+ GPP PPPP + P + A+++AA
Sbjct: 195 QAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAA 254
Query: 197 AAAAAAAA----HLPSMAGGQQPPPQSL--------LYSQPGGFTVNGMLSAPPGPGG-- 242
AAAA ++ + A G PP ++L Y +P + PP P
Sbjct: 255 AAAAEQSSPQLYNFSGAAPGPPPPERALPRQDTVIKHYQRP----ASAQPPPPPPPAHAL 310
Query: 243 ------GGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGG 296
GG G ++ + + G P + A GP GG
Sbjct: 311 QHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGG 370
Query: 297 GGGGAGPG 304
GG G G G
Sbjct: 371 GGAGGGGG 378
Score = 43.5 bits (101), Expect = 4e-04
Identities = 61/252 (24%), Positives = 77/252 (30%), Gaps = 49/252 (19%)
Query: 30 GGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAA----- 84
G G G GG+GG GG R SV + +GA AA
Sbjct: 663 GEDGAADASKGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGL 722
Query: 85 ----------SNGGHMLSHAHQWVTALPHAAAAAAAAAA----------AAVEASSPWSG 124
GG T++ H A A A +++ P
Sbjct: 723 GRLKEKKKGPERGGET---PEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQSTQPTPH 779
Query: 125 SAVGMAGSPQQPPQPPPPPPQ--------GPDVKGGAGRDDLHAGTALHHRGPPHLGPPP 176
+ AG P P PPPPPQ P A + +H G P PPP
Sbjct: 780 GLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPP 839
Query: 177 PPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGF--TVNGML 234
PPP P A + AA P + P +SL PG + +
Sbjct: 840 PPP----PPPMPLQLEAHLRSHGLEPAAPSPRLR-----PEESL--DPPGAMQELLGALE 888
Query: 235 SAPPGPGGGGGG 246
PP PG G G
Sbjct: 889 PLPPAPGDTGVG 900
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/152 (31%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 111 AAAAAVEASSPWSG-SAVGMAGSPQQP---------------PQPPPPPPQGPDVKGGAG 154
A AAAV P G + G+P+ P PQP PPPP P
Sbjct: 1425 APAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPS 1484
Query: 155 RDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ 214
L A T PP PPPPPP P AAA AA AA PS +
Sbjct: 1485 PPPLVAPTPSSPPPPPL--PPPPPPAMPSPPPPPPPAAAPLAAPPEEPAA--PSPEDPEL 1540
Query: 215 PPPQSL-LYSQPGGFTVNGMLSAPPGPGGGGG 245
P + L L + V G G GG G
Sbjct: 1541 PDTRPLHLAKKQETAAVCGETDEEAGESGGEG 1572
Score = 39.7 bits (91), Expect = 0.006
Identities = 67/252 (26%), Positives = 89/252 (35%), Gaps = 57/252 (22%)
Query: 99 TALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGP-DVKGGAGRDD 157
+ L HA + + +A+ V P + G+PQ PP PPPPPP P ++
Sbjct: 804 SVLSHAPSPSPSASKVGVHLLEPATRD-----GAPQPPPPPPPPPPPMPLQLEAHLRSHG 858
Query: 158 LH-AGTALHHRGPPHLGPP-----------PPPPHQGHPGGWGAAAAAAAAAAAAAAAAH 205
L A + R L PP P PP G G + A A
Sbjct: 859 LEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTG----VGPPNSEGKDPAGAYR 914
Query: 206 LPSMAGGQQPP---------PQSLLYSQPGGF--TVNGMLSAPPGPGGGGGGAGGGAQSL 254
PS G + P P SLL + F T+ M GGG G A
Sbjct: 915 SPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMF------GGGAADDYGKA--- 965
Query: 255 VHPGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGGGAG---PGLNSHDPH 311
P GD P+ A P P P + P+ G GAG PGL DP+
Sbjct: 966 -GPPEDEGD-PKAG---------AGPPPGPPAYDPYGPYCPGRASGAGPETPGLGL-DPN 1013
Query: 312 SDEDTPTSDDLE 323
+ P++ + E
Sbjct: 1014 KPPELPSTVNAE 1025
Score = 33.5 bits (75), Expect = 0.46
Identities = 50/191 (26%), Positives = 63/191 (32%), Gaps = 32/191 (16%)
Query: 4 AASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAY 63
AA + LP S + S HS A GGG G GGGG ++P + S
Sbjct: 518 AAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRP----LQSPPA 573
Query: 64 RGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWS 123
G P V G+ A G LS L A + AA A + S
Sbjct: 574 TGRPPGV---------GSPGAP--GKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGS 622
Query: 124 GSAVGMAGSPQQPPQ------------PPPPPPQGPD-VKGGAGRDDLHAGTALHHRGPP 170
G G P + + P PP G D + G G D G G
Sbjct: 623 ELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGAADASKGLG----GSG 678
Query: 171 HLGPPPPPPHQ 181
G PP P++
Sbjct: 679 GAGGPPGTPYE 689
Score = 30.8 bits (68), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 132 SPQQPPQPPPPPPQGPDVKGG 152
+P PP PPPPP + KGG
Sbjct: 1038 APPPPPPPPPPPAPASEPKGG 1058
Score = 29.6 bits (65), Expect = 6.7
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 22/72 (30%)
Query: 130 AGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAG----------------------TALHHR 167
AG P PP P P P GAG + G + H
Sbjct: 978 AGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQA 1037
Query: 168 GPPHLGPPPPPP 179
PP PPPPPP
Sbjct: 1038 APPPPPPPPPPP 1049
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 80.5 bits (197), Expect = 3e-15
Identities = 64/195 (32%), Positives = 77/195 (39%), Gaps = 39/195 (20%)
Query: 104 AAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTA 163
AAAAAAAAAAA+ P + + G P ++G HAG A
Sbjct: 173 AAAAAAAAAAASSPVYVPTTRVGSMLPGLPYH-------------LQGSGSGPANHAGGA 219
Query: 164 LHHRGPPHLGPPPPPPHQGH-PGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLY 222
H G P PP G G GAA A +AAA +A P PP +
Sbjct: 220 GAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPY---SPSPPMANGAA 276
Query: 223 SQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGLVRGDTPELAE-----------HH 271
+PGG+ G GG GG GG SL G G P+ + HH
Sbjct: 277 REPGGYAAAG--------SGGAGGVSGGGSSLAAMG---GREPQYSSLSAARPLNGTYHH 325
Query: 272 HHHHHHAHPHPPHPH 286
HHHHHH HP P P+
Sbjct: 326 HHHHHHHHPSPYSPY 340
Score = 35.4 bits (80), Expect = 0.12
Identities = 50/191 (26%), Positives = 59/191 (30%), Gaps = 52/191 (27%)
Query: 28 GAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNG 87
G+GGG GGG G GGAG +AA S + PS M A G
Sbjct: 236 GSGGGAAGGGAAGPGGAG--------SAAAHVSARFPYSPSPP-------MANGAAREPG 280
Query: 88 GHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGP 147
G+ AAA + A V SG +A + PQ P
Sbjct: 281 GY----------------AAAGSGGAGGV------SGGGSSLAAMGGREPQYSSLSAARP 318
Query: 148 DVKGGAGRDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLP 207
GT HH H P P P+ G P A A L
Sbjct: 319 -----------LNGTYHHHHHHHHHHPSPYSPYVGAP----LTPAWPAGPFETPVLHSLQ 363
Query: 208 SMAGGQQPPPQ 218
S AG P P+
Sbjct: 364 SRAGAPLPVPR 374
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 AASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTS 60
+A PY P + A G+ A G GG GG GGG + GG +P +++++
Sbjct: 260 SARFPYSPSPPM-ANGAAREPGGYAAAGSGGAGGVSGGGSSLAAMGGREPQYSSLSA 315
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 79.7 bits (195), Expect = 6e-15
Identities = 117/421 (27%), Positives = 140/421 (33%), Gaps = 134/421 (31%)
Query: 16 LAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMV-- 73
L+A + S AA +GG G GGGG GGG G G G G+ A GA P S ++
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA---GAGAKGPRSYPVIPV 385
Query: 74 -QSDFMQGAMAASNG-GHMLSHAHQWVTA-----LPHAAAAAAAAAAAAVEASSPWSGSA 126
G + G G + H + + A L H A AAA A A + +G+A
Sbjct: 386 PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAA 445
Query: 127 --VGMAGS------------------PQQPP---------QPPPPPP--------QGPDV 149
G++G P + P QPPP PP + P +
Sbjct: 446 PKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPAL 505
Query: 150 KGGAGRDDLHAGTAL--HHRGPPHLGPP----------PPPPHQG----------HPGGW 187
A D G A PP PP PPPP G PGG
Sbjct: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGS 565
Query: 188 GAAAAA-------AAAAAAAAAAAHLPSMAGGQQPPPQ--SLLYSQPGGFTVNGMLSAPP 238
G +A + AAA A AAA AG + P P LL + G SA
Sbjct: 566 GGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR 625
Query: 239 GPGG----------GGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHP--- 285
GG G AG + HP HHH HHHH H HPP P
Sbjct: 626 PVGGKDDAESLAKLHGASAGAPHSAQTHP----------HHHHHPHHHHHHHHPPQPPSP 675
Query: 286 ---------------HHAQGP--------------PHHGG--GGGGAGPGLNSHDPHSDE 314
HH P PHH G GG S D DE
Sbjct: 676 LLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCSYPSEDSSEDE 735
Query: 315 D 315
D
Sbjct: 736 D 736
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/154 (31%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 102 PHAAAAAAAAAAAAVEASSPWSGSAVG--MAGSPQQPPQPPPPPPQGPDVKGGAGRDDLH 159
P ++ AAA AAAA A G +G + G+P PP PPPPPP
Sbjct: 255 PLSSVKAAAVAAAAAVAGG---GGLLGPHLLGAP--PPPPPPPPP--------------- 294
Query: 160 AGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
G PH P AA AAA+ +AAAA+ + + +GG
Sbjct: 295 ---LAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG------- 344
Query: 220 LLYSQPGGFTVNGMLSAPPGPG-GGGGGAGGGAQ 252
+ GG G A G G G G GAG GA+
Sbjct: 345 ---AGTGGGGAGGGCVAGVGVGAGAGAGAGAGAK 375
Score = 33.5 bits (75), Expect = 0.46
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A A A + +S G G P PPPPPP P G G G+ +HH
Sbjct: 803 APAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSS--PGSPVHH 860
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 78.6 bits (192), Expect = 1e-14
Identities = 95/365 (26%), Positives = 120/365 (32%), Gaps = 94/365 (25%)
Query: 28 GAGGG----------GGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDF 77
GAGG G G G G G GGGG +Q ++ G+ PS + Q D+
Sbjct: 548 GAGGSKLPPVLANLMGSMGAGKGPQGPGGGGINVQEILTSIM-GSPNSHPSEELLKQPDY 606
Query: 78 MQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAV-GMAGSPQQP 136
++ H + + ++ P G + G G P P
Sbjct: 607 SDKIKQM-----LVPHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGP 661
Query: 137 PQP----PPPPPQGPD---------VKGGAGRDDLHAGTALHHRGPPHLG-----PPPPP 178
P PPPPP+G D ++GG R G +HRG G PPPPP
Sbjct: 662 VGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPP 721
Query: 179 -------------------------------PHQGHPGGWGAAAAAAA--AAAAAAAAAH 205
PH+G GG G ++ + H
Sbjct: 722 FRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGH 781
Query: 206 LP------SMAGGQQPPPQSLLYSQPGGFTVNGMLSAPPGPGGGGGGAGGGAQSLVHPGL 259
P SM GG P + PGG G P GGG GAGGG + PG
Sbjct: 782 RPHEGPGGSMGGGGGHRP----HEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGG 837
Query: 260 VRGDTPELAEHH---------HHHH----HHAHPH---PPHPHHAQGPPHHGGGGGGAGP 303
G + H H H H H H PPH H P HGGGG
Sbjct: 838 SMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHD 897
Query: 304 GLNSH 308
G +SH
Sbjct: 898 GGHSH 902
Score = 41.6 bits (96), Expect = 0.002
Identities = 67/248 (27%), Positives = 76/248 (30%), Gaps = 57/248 (22%)
Query: 31 GGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHM 90
GG G G G G GG GG P GA RG S G GGH
Sbjct: 694 GGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGA-RGGRSGGGPPNGRGGPGGGMVGGGGHR 752
Query: 91 LSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVK 150
PH ++ P G GM GS +P + P G +
Sbjct: 753 -----------PHEGPGGGMGNSSG---HRPHEGPGGGM-GSGHRPHEGP-----GGSMG 792
Query: 151 GGAGRDDLHAGTALHHRGPPHLGP-------PPPPPHQGHPGGWGAAAA----AAAAAAA 199
GG G HR PH GP PH+G GG GA +
Sbjct: 793 GGGG-----------HR--PHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSM 839
Query: 200 AAAAAHLPSMAGGQQPPPQSLLYSQPG--GFTVNGMLSAPP-------GPGGGGGGAGGG 250
+ H P G P + PG G G PP GPG GGGG G
Sbjct: 840 GGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRG---PPPHEHRGHDGPGHGGGGHRGH 896
Query: 251 AQSLVHPG 258
H G
Sbjct: 897 DGGHSHGG 904
Score = 41.2 bits (95), Expect = 0.002
Identities = 54/200 (27%), Positives = 61/200 (30%), Gaps = 65/200 (32%)
Query: 11 PGNSLLAAGSIVHSDAAGAGGG-------------GGGGGGG-----GGGGAGGGGGGMQ 52
PG ++ G H G GGG GGG G G G GG+ GGGGG +
Sbjct: 741 PGGGMVGGGG--HRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHR 798
Query: 53 PGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAA 112
P G + GH PH A
Sbjct: 799 PHEG----------------------PGGGISGGSGHR-----------PHEGPGGGMGA 825
Query: 113 AAAVEASSPWSGSAVGMAG-SPQQPPQPPPPPPQGP-DVKGGAGRDDLHAGTALH----H 166
GS G G P + P P P DV G G D H G H H
Sbjct: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHD--HRGPPPHEHRGH 883
Query: 167 RGPPHLGPPPPPPHQGHPGG 186
GP H G H+GH GG
Sbjct: 884 DGPGHGG----GGHRGHDGG 899
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 78.6 bits (192), Expect = 1e-14
Identities = 117/421 (27%), Positives = 140/421 (33%), Gaps = 134/421 (31%)
Query: 16 LAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMV-- 73
L+A + S AA +GG G GGGG GGG G G G G+ A GA P S ++
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA---GAGAKGPRSYPVIPV 385
Query: 74 -QSDFMQGAMAASNG-GHMLSHAHQWVTA-----LPHAAAAAAAAAAAAVEASSPWSGSA 126
G + G G + H + + A L H A AAA A A + +G+A
Sbjct: 386 PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAA 445
Query: 127 --VGMAGS------------------PQQPP---------QPPPPPP--------QGPDV 149
G++G P + P QPPP PP + P +
Sbjct: 446 PKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPAL 505
Query: 150 KGGAGRDDLHAGTAL--HHRGPPHLGPP----------PPPPHQG----------HPGGW 187
A D G A PP PP PPPP G PGG
Sbjct: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGS 565
Query: 188 GAAAAA-------AAAAAAAAAAAHLPSMAGGQQPPPQ--SLLYSQPGGFTVNGMLSAPP 238
G +A + AAA A AAA AG + P P LL + G SA
Sbjct: 566 GGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR 625
Query: 239 GPGG----------GGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHP--- 285
GG G AG + HP HHH HHHH H HPP P
Sbjct: 626 PVGGKDDAESLAKLHGASAGAPHSAQTHP----------HHHHHPHHHHHHHHPPQPPSP 675
Query: 286 ---------------HHAQGP--------------PHHGG--GGGGAGPGLNSHDPHSDE 314
HH P PHH G GG S D DE
Sbjct: 676 LLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDE 735
Query: 315 D 315
D
Sbjct: 736 D 736
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/154 (31%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 102 PHAAAAAAAAAAAAVEASSPWSGSAVG--MAGSPQQPPQPPPPPPQGPDVKGGAGRDDLH 159
P ++ AAA AAAA A G +G + G+P PP PPPPPP
Sbjct: 255 PLSSVKAAAVAAAAAVAGG---GGLLGPHLLGAP--PPPPPPPPP--------------- 294
Query: 160 AGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
G PH P AA AAA+ +AAAA+ + + +GG
Sbjct: 295 ---LAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG------- 344
Query: 220 LLYSQPGGFTVNGMLSAPPGPG-GGGGGAGGGAQ 252
+ GG G A G G G G GAG GA+
Sbjct: 345 ---AGTGGGGAGGGCVAGVGVGAGAGAGAGAGAK 375
Score = 33.5 bits (75), Expect = 0.46
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A A A + +S G G P PPPPPP P G G G+ +HH
Sbjct: 803 APAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSS--PGSPVHH 860
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 78.6 bits (192), Expect = 1e-14
Identities = 117/421 (27%), Positives = 140/421 (33%), Gaps = 134/421 (31%)
Query: 16 LAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMV-- 73
L+A + S AA +GG G GGGG GGG G G G G+ A GA P S ++
Sbjct: 329 LSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA---GAGAKGPRSYPVIPV 385
Query: 74 -QSDFMQGAMAASNG-GHMLSHAHQWVTA-----LPHAAAAAAAAAAAAVEASSPWSGSA 126
G + G G + H + + A L H A AAA A A + +G+A
Sbjct: 386 PSKGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAGGAGAA 445
Query: 127 --VGMAGS------------------PQQPP---------QPPPPPP--------QGPDV 149
G++G P + P QPPP PP + P +
Sbjct: 446 PKAGLSGLFWPAGRKDAFYPPFCMFWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPAL 505
Query: 150 KGGAGRDDLHAGTAL--HHRGPPHLGPP----------PPPPHQG----------HPGGW 187
A D G A PP PP PPPP G PGG
Sbjct: 506 LRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGS 565
Query: 188 GAAAAA-------AAAAAAAAAAAHLPSMAGGQQPPPQ--SLLYSQPGGFTVNGMLSAPP 238
G +A + AAA A AAA AG + P P LL + G SA
Sbjct: 566 GGDCSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFR 625
Query: 239 GPGG----------GGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHPPHP--- 285
GG G AG + HP HHH HHHH H HPP P
Sbjct: 626 PVGGKDDAESLAKLHGASAGAPHSAQTHP----------HHHHHPHHHHHHHHPPQPPSP 675
Query: 286 ---------------HHAQGP--------------PHHGG--GGGGAGPGLNSHDPHSDE 314
HH P PHH G GG S D DE
Sbjct: 676 LLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQHPHHRGLLSPGGTSCCYPSEDSSEDE 735
Query: 315 D 315
D
Sbjct: 736 D 736
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/154 (31%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 102 PHAAAAAAAAAAAAVEASSPWSGSAVG--MAGSPQQPPQPPPPPPQGPDVKGGAGRDDLH 159
P ++ AAA AAAA A G +G + G+P PP PPPPPP
Sbjct: 255 PLSSVKAAAVAAAAAVAGG---GGLLGPHLLGAP--PPPPPPPPP--------------- 294
Query: 160 AGTALHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
G PH P AA AAA+ +AAAA+ + + +GG
Sbjct: 295 ---LAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG------- 344
Query: 220 LLYSQPGGFTVNGMLSAPPGPG-GGGGGAGGGAQ 252
+ GG G A G G G G GAG GA+
Sbjct: 345 ---AGTGGGGAGGGCVAGVGVGAGAGAGAGAGAK 375
Score = 33.5 bits (75), Expect = 0.46
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 107 AAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHH 166
A A A A + +S G G P PPPPPP P G G G+ +HH
Sbjct: 803 APAVAGAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSS--PGSPVHH 860
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 70.1 bits (170), Expect = 4e-12
Identities = 76/282 (26%), Positives = 90/282 (31%), Gaps = 41/282 (14%)
Query: 33 GGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHMLS 92
GGGGGG G GGG GG+ +R P + + Q+ G +G
Sbjct: 10 GGGGGGFHRRGGGGGRGGLHD---------FRSPPPGMGLNQNRGPMGPGPGQSGPKPPI 60
Query: 93 HAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPP-----PPPPQGP 147
PH + P QQPP PP P QGP
Sbjct: 61 PPPP-----PHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGP 115
Query: 148 DVKGGAGRDDLHAGTALHHRGPPHLGPP---PPPPHQGHPGGWGAAAAAAAAAAAAAAAA 204
G G + +A P PP P P P A A ++
Sbjct: 116 GPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175
Query: 205 HLPSMAGGQQPPPQSLLYSQPG-------GFTVNGMLSAPPGPGGGGG-GAGGGAQSLVH 256
P AGG PPP ++ PG G G + P PGGG G GG H
Sbjct: 176 TTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPH 235
Query: 257 PGLVRGDTPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGG 298
G G P HH P H H QGPP G GG
Sbjct: 236 RG---GGEPRGGRQHH--------PPYHQQHHQGPPPGGPGG 266
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 66.2 bits (160), Expect = 6e-11
Identities = 82/315 (26%), Positives = 108/315 (34%), Gaps = 59/315 (18%)
Query: 15 LLAAGSIVHSDAAGAGGGGGGGGGGGGG----------GAGGGGGGM----QPGSAAVTS 60
+L AG G+GGGG G GGG GG GAG GGG M QP AA +
Sbjct: 369 VLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDA 428
Query: 61 GAYRGDPSSVKMVQS--DFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEA 118
A ++ + + F A + + + + A AAAAAAAAAAA A
Sbjct: 429 AAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGA 488
Query: 119 SSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHLGP-PPP 177
P G+ + P +GP D+ AL PP L P PPP
Sbjct: 489 PEPLDGAEPAKESGLGAEERCPSALSRGP-------LDEDGTDEAL----PPPLAPLPPP 537
Query: 178 PPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGMLSAP 237
PP G + +A + A + + P +
Sbjct: 538 PPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARG------------------ 579
Query: 238 PGPGGGGGG--------AGGGAQSLVHPGLVRGDTPEL-AEHHHHHHHHAHPHPPHPHHA 288
PGPG G GG G + + P + D PE+ E + P
Sbjct: 580 PGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEP--- 636
Query: 289 QGPPHHGGGGGGAGP 303
P GGG G P
Sbjct: 637 -SAPSAGGGPDGEQP 650
Score = 42.7 bits (99), Expect = 8e-04
Identities = 49/179 (27%), Positives = 61/179 (34%), Gaps = 44/179 (24%)
Query: 113 AAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHRGPPHL 172
+A E S W G + + P PP ++ G D+ GPP
Sbjct: 246 SATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLR--CGEDEA--------AGPP-- 293
Query: 173 GPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAH------LPSMAGG---QQPPPQSLLYS 223
GPPPP P +G GA+ A A +PS G + PPP L+
Sbjct: 294 GPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP---LFP 350
Query: 224 QPGGFTVN--------------GMLSAPPGPGGGG------GGAGGGAQSLVHPGLVRG 262
P GF G PG G GG GGAGG S + PG G
Sbjct: 351 HPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG 409
Score = 38.9 bits (89), Expect = 0.011
Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 34/154 (22%)
Query: 175 PPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYSQPGGFTVNGML 234
P PPPH+ G AA G PPP + Q G G
Sbjct: 274 PGPPPHKSLRCGEDEAA-------------------GPPGPPPP---HPQRGLGLATGA- 310
Query: 235 SAPPGPGGGGGGAGGGAQSLVHP-----GLVRGDTPELAEHHHHH--HHHAHPHPPHP-- 285
S P GPGG GGGAG + ++ GL++ P L H + P P
Sbjct: 311 SGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVL 370
Query: 286 --HHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTP 317
+G P G GGGGAG G + P + P
Sbjct: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPP 404
Score = 36.6 bits (83), Expect = 0.055
Identities = 56/213 (26%), Positives = 70/213 (32%), Gaps = 38/213 (17%)
Query: 31 GGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSDFMQGAMAASNGGHM 90
G G G G G GG GGG S V +G K+ +
Sbjct: 303 GLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP--------------L 348
Query: 91 LSHAHQWVTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQP-----PPPPPQ 145
H + + TA A P +GS G AG+ P PP
Sbjct: 349 FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGA 408
Query: 146 GP--------DVKGGAGRD-----DLHAGTALHHRGP---PHLGPPPPPPH---QGHPGG 186
GP GA +D A ++ P P G P P + Q
Sbjct: 409 GPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKA 468
Query: 187 WGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
AA AAAAAAAAAAA + P G +P +S
Sbjct: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKES 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,690,325
Number of Sequences: 37866
Number of extensions: 2202959
Number of successful extensions: 73314
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 1329
Number of HSP's that attempted gapping in prelim test: 20237
Number of HSP's gapped (non-prelim): 25146
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.