SSSCA1 32591

Name: SSSCA1	Sequence: fasta or formatted (199aa)		NCBI GI: 5453838
Description: Sjogren syndrome/scleroderma autoantigen 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.1 28 3 C cysteine 4.0 8 1 D aspartate 5.5 11 2 E glutamate 7.0 14 1 F phenylalanine 0.5 1 1 G glycine 5.5 11 1 H histidine 1.5 3 1 I isoleucine 2.5 5 1 K lysine 3.0 6 1 L leucine 12.6 25 2 M methionine 2.0 4 1 N asparagine 2.0 4 1 P proline 7.5 15 2 Q glutamine 8.0 16 2 R arginine 6.5 13 2 S serine 6.5 13 2 T threonine 5.0 10 1 V valine 3.5 7 1 W tryptophan 1.0 2 1 Y tyrosine 1.5 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Sjogren syndrome/scleroderma autoantigen 1 FSCB 0.045 fibrous sheath CABYR binding protein USP43 0.032 ubiquitin specific protease 43 WASF3 0.027 WAS protein family, member 3 LOC100287293 0.024 PREDICTED: hypothetical protein XP_002343924 C15orf39 0.021 hypothetical protein LOC56905 EMID2 0.021 EMI domain containing 2 SHANK3 0.021 SH3 and multiple ankyrin repeat domains 3 SYDE1 0.021 synapse defective 1, Rho GTPase, homolog 1 ZNF335 0.021 zinc finger protein 335 ARX 0.021 aristaless related homeobox ARAF 0.021 v-raf murine sarcoma 3611 viral oncogene homolog [Hom... VWCE 0.021 von Willebrand factor C and EGF domains HOXA3 0.019 homeobox A3 isoform a HOXA3 0.019 homeobox A3 isoform a TBX1 0.019 T-box 1 isoform B TBX1 0.019 T-box 1 isoform C TBX1 0.019 T-box 1 isoform A FCHO2 0.019 FCH domain only 2 isoform b FCHO2 0.019 FCH domain only 2 isoform a TRIM66 0.019 tripartite motif-containing 66 ZC3H3 0.019 zinc finger CCCH-type containing 3 COL5A1 0.019 alpha 1 type V collagen preproprotein SPEF2 0.019 KPL2 protein isoform 1 SH3RF2 0.019 SH3 domain containing ring finger 2 KIAA0754 0.019 hypothetical protein LOC643314 FOXA2 0.019 forkhead box A2 isoform 2 NAP5 0.019 Nck-associated protein 5 isoform 1 FOXC1 0.019 forkhead box C1 EP400 0.019 E1A binding protein p400 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.