Guide to the Human Genome
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Name: FCHO2 Sequence: fasta or formatted (810aa) NCBI GI: 226371723
Description:

FCH domain only 2 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {777aa} FCH domain only 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         61           2
 C cysteine            1.1          9           1
 D aspartate           4.2         34           1
 E glutamate           7.8         63           2
 F phenylalanine       3.2         26           1
 G glycine             4.8         39           2
 H histidine           1.6         13           2
 I isoleucine          5.2         42           2
 K lysine              8.4         68           2
 L leucine             7.5         61           2
 M methionine          2.0         16           1
 N asparagine          5.1         41           2
 P proline             6.3         51           3
 Q glutamine           3.8         31           1
 R arginine            3.1         25           1
 S serine             11.7         95           6
 T threonine           6.8         55           2
 V valine              6.3         51           3
 W tryptophan          0.9          7           1
 Y tyrosine            2.7         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FCH domain only 2 isoform a 
FCHO2                 0.949   FCH domain only 2 isoform b 
FCHO1                 0.451   FCH domain only 1 isoform b 
FCHO1                 0.451   FCH domain only 1 isoform b 
FCHO1                 0.446   FCH domain only 1 isoform a 
FCHO1                 0.401   FCH domain only 1 isoform c 
SGIP1                 0.289   SH3-domain GRB2-like (endophilin) interacting prote...
PSTPIP1               0.048   proline-serine-threonine phosphatase interacting pro...
PSTPIP2               0.043   proline-serine-threonine phosphatase interacting pr...
GAS7                  0.034   growth arrest-specific 7 isoform d 
GAS7                  0.034   growth arrest-specific 7 isoform c 
GAS7                  0.034   growth arrest-specific 7 isoform b 
GAS7                  0.034   growth arrest-specific 7 isoform a 
PACSIN2               0.024   protein kinase C and casein kinase substrate in neu...
PACSIN1               0.023   protein kinase C and casein kinase substrate in neur...
FNBP1                 0.018   formin binding protein 1 
TRIP10                0.017   thyroid hormone receptor interactor 10 
PACSIN3               0.017   protein kinase C and casein kinase substrate in neur...
LOC100128719          0.016   PREDICTED: hypothetical protein, partial 
LOC100128719          0.016   PREDICTED: hypothetical protein, partial 
MUC7                  0.015   mucin 7, secreted precursor 
MUC7                  0.015   mucin 7, secreted precursor 
MUC7                  0.015   mucin 7, secreted precursor 
NUP153                0.015   nucleoporin 153kDa 
NOSTRIN               0.015   nitric oxide synthase trafficker isoform 2 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
GOLGA4                0.014   golgi autoantigen, golgin subfamily a, 4 
NKX6-1                0.014   NK6 transcription factor related, locus 1 
MUC17                 0.014   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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