Guide to the Human Genome
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Name: FCHO2 Sequence: fasta or formatted (777aa) NCBI GI: 226371725
Description:

FCH domain only 2 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {810aa} FCH domain only 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         60           2
 C cysteine            1.2          9           1
 D aspartate           4.2         33           1
 E glutamate           7.6         59           2
 F phenylalanine       3.2         25           1
 G glycine             4.8         37           2
 H histidine           1.3         10           2
 I isoleucine          4.4         34           2
 K lysine              8.4         65           2
 L leucine             7.5         58           2
 M methionine          2.1         16           1
 N asparagine          5.1         40           2
 P proline             6.6         51           3
 Q glutamine           3.6         28           1
 R arginine            3.2         25           1
 S serine             12.0         93           6
 T threonine           6.9         54           2
 V valine              6.6         51           3
 W tryptophan          0.9          7           1
 Y tyrosine            2.8         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FCH domain only 2 isoform b 
FCHO2                 0.989   FCH domain only 2 isoform a 
FCHO1                 0.436   FCH domain only 1 isoform b 
FCHO1                 0.436   FCH domain only 1 isoform b 
FCHO1                 0.430   FCH domain only 1 isoform a 
FCHO1                 0.383   FCH domain only 1 isoform c 
SGIP1                 0.301   SH3-domain GRB2-like (endophilin) interacting prote...
PSTPIP2               0.037   proline-serine-threonine phosphatase interacting pr...
PSTPIP1               0.037   proline-serine-threonine phosphatase interacting pro...
GAS7                  0.034   growth arrest-specific 7 isoform d 
GAS7                  0.034   growth arrest-specific 7 isoform c 
GAS7                  0.034   growth arrest-specific 7 isoform b 
GAS7                  0.034   growth arrest-specific 7 isoform a 
PACSIN2               0.023   protein kinase C and casein kinase substrate in neu...
PACSIN1               0.020   protein kinase C and casein kinase substrate in neur...
CLIP1                 0.018   restin isoform b 
CLIP1                 0.018   restin isoform a 
LOC100128719          0.017   PREDICTED: hypothetical protein, partial 
LOC100128719          0.017   PREDICTED: hypothetical protein, partial 
MUC7                  0.016   mucin 7, secreted precursor 
MUC7                  0.016   mucin 7, secreted precursor 
MUC7                  0.016   mucin 7, secreted precursor 
NUP153                0.016   nucleoporin 153kDa 
ATN1                  0.015   atrophin-1 
ATN1                  0.015   atrophin-1 
PACSIN3               0.015   protein kinase C and casein kinase substrate in neur...
NKX6-1                0.015   NK6 transcription factor related, locus 1 
MUC17                 0.015   mucin 17 
STIM1                 0.014   stromal interaction molecule 1 precursor 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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