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Search of human proteins with 5453660
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453660 tubulin, gamma complex associated protein 3 [Homo
sapiens]
(907 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453660 tubulin, gamma complex associated protein 3 [Homo sap... 1808 0.0
gi|5729840 tubulin, gamma complex associated protein 2 [Homo sap... 206 8e-53
gi|38454194 tubulin, gamma complex associated protein 4 [Homo sa... 94 8e-19
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 89 1e-17
gi|156616299 tubulin, gamma complex associated protein 5 isoform... 80 1e-14
gi|156616297 tubulin, gamma complex associated protein 5 isoform... 80 1e-14
gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens] 35 0.41
gi|24308223 hypothetical protein LOC57577 [Homo sapiens] 35 0.41
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 33 1.2
gi|21314654 ring finger protein 139 [Homo sapiens] 33 1.2
gi|215599585 integrator complex subunit 12 [Homo sapiens] 33 1.2
gi|21361851 integrator complex subunit 12 [Homo sapiens] 33 1.2
gi|224458301 family with sequence similarity 186, member A [Homo... 33 1.6
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 33 1.6
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 33 1.6
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 33 1.6
gi|31543559 radial spoke 3 homolog [Homo sapiens] 32 2.1
gi|164419758 bromodomain containing 2 [Homo sapiens] 32 2.1
gi|4826806 bromodomain containing 2 [Homo sapiens] 32 2.1
gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens] 32 2.1
gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens] 32 2.1
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 32 2.7
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 32 2.7
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 32 2.7
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 32 2.7
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 32 2.7
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 32 2.7
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 32 2.7
gi|226342869 TBC1 domain family, member 15 isoform 2 [Homo sapiens] 32 3.5
gi|226342867 TBC1 domain family, member 15 isoform 3 [Homo sapiens] 32 3.5
>gi|5453660 tubulin, gamma complex associated protein 3 [Homo
sapiens]
Length = 907
Score = 1808 bits (4682), Expect = 0.0
Identities = 907/907 (100%), Positives = 907/907 (100%)
Query: 1 MATPDQKSPNVLLQNLCCRILGRSEADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKK 60
MATPDQKSPNVLLQNLCCRILGRSEADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKK
Sbjct: 1 MATPDQKSPNVLLQNLCCRILGRSEADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKK 60
Query: 61 ELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQ 120
ELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQ
Sbjct: 61 ELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQ 120
Query: 121 ALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSL 180
ALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSL
Sbjct: 121 ALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSL 180
Query: 181 LPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQATTSKGVPSAVSRNMTRSRREGDTG 240
LPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQATTSKGVPSAVSRNMTRSRREGDTG
Sbjct: 181 LPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQATTSKGVPSAVSRNMTRSRREGDTG 240
Query: 241 GTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWL 300
GTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWL
Sbjct: 241 GTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWL 300
Query: 301 HNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLES 360
HNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLES
Sbjct: 301 HNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLES 360
Query: 361 SLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILS 420
SLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILS
Sbjct: 361 SLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILS 420
Query: 421 LVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQS 480
LVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQS
Sbjct: 421 LVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQS 480
Query: 481 RKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENAFQGKIDAAYFE 540
RKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENAFQGKIDAAYFE
Sbjct: 481 RKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENAFQGKIDAAYFE 540
Query: 541 TSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGI 600
TSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGI
Sbjct: 541 TSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGI 600
Query: 601 LETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHY 660
LETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHY
Sbjct: 601 LETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHY 660
Query: 661 LRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQY 720
LRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQY
Sbjct: 661 LRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQY 720
Query: 721 YITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFD 780
YITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFD
Sbjct: 721 YITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFD 780
Query: 781 QIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
QIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI
Sbjct: 781 QIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
Query: 841 PKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTR 900
PKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTR
Sbjct: 841 PKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTR 900
Query: 901 GRRSSHT 907
GRRSSHT
Sbjct: 901 GRRSSHT 907
>gi|5729840 tubulin, gamma complex associated protein 2 [Homo
sapiens]
Length = 902
Score = 206 bits (524), Expect = 8e-53
Identities = 182/713 (25%), Positives = 323/713 (45%), Gaps = 106/713 (14%)
Query: 241 GTMEIT--EAALVRDILYVFQGIDGKNIKMN----NTENCYKVEGKANLSRSLRDTAVRL 294
GT+ + E+A+V D+LYV G+DG+ + + V+ NL S+R+ R+
Sbjct: 206 GTLPLASQESAVVEDLLYVLVGVDGRYVSAQPLAGRQSRTFLVD--PNLDLSIRELVHRI 263
Query: 295 SELGWLHNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGV 354
+ ++ + R+ +++S +G V + AA+ ++E+ +L SQL+ QG+
Sbjct: 264 LPVAASYSAVTRFIEEKS-SFEYGQVNHALAAAMRTLVKEHL----ILVSQLEQLHRQGL 318
Query: 355 NLGLESSLTLRRLLVWTY-DPKIR----LKTLAALVDHCQGRKGGELASAVH--AYTKTG 407
L+L++L W Y P +R L +LA VD + GG S +H +++ TG
Sbjct: 319 -------LSLQKL--WFYIQPAMRTMDILASLATSVDKGECL-GGSTLSLLHDRSFSYTG 368
Query: 408 DPYMRSLVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVK-------TDRLW 460
D + L ++ S P L +WIY G + D Y EF V K D+ W
Sbjct: 369 DSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSEFMVEEHELRKERIQEDYNDKYW 428
Query: 461 HDKYTLRKSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQT-PTTKMIAVTKSAESPQDA 519
+YT+ + IPSF+ + K+L GK +N + + HD T P K I
Sbjct: 429 DQRYTIVQQQIPSFL-QKMADKILSTGKYLNVVRECGHDVTCPVAKEI------------ 475
Query: 520 ADLFTDLENAFQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMD 579
++T E A+ +I+ A+ SK LLD L ++ L+ H+++++RY L+ QGDF H MD
Sbjct: 476 --IYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMD 533
Query: 580 LLKPELVRPATTLYQHNLTGILETAVRATNAQFDS---------------PEILRRLDVR 624
L + EL +P + L +LE A+R + A D ++LR L +
Sbjct: 534 LAEEELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIE 593
Query: 625 ------LLEVSPGD---TGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEY 675
+ P + +G + FS DY V P++ + R+ ++ Y +F ++ K +E
Sbjct: 594 TKQEKAMAHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVER 653
Query: 676 ILTDI-RKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDEL 734
L + L + F+G L M++F+ +QYY+ FEV+E +W L
Sbjct: 654 QLCSVWISNKTAKQHSLHSAQWFAGAF----TLRQRMLNFVQNIQYYMMFEVMEPTWHIL 709
Query: 735 WNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYR 794
++ A ++D ++ H FLDT + C+L + +L VF +++ + ++
Sbjct: 710 EKNLKSASNIDDVLGHHTGFLDTCLKDCMLTNP------ELLKVFSKLMSV----CVMFT 759
Query: 795 AALEELQRRLQFEEKKKQREIEGQ--WGVTAAEEEE-----ENKRIGEFKESIPKMCSQL 847
+++ + ++ + + + +E G+ A EE K + E +++ +
Sbjct: 760 NCMQKFTQSMKLDGELGGQTLEHSTVLGLPAGAEERARKELARKHLAEHADTVQLVSGFE 819
Query: 848 RILTHFYQGIVQQFLVLL-------TTSSDESLRFLSFRLDFNEHYKAREPRL 893
+ F + L LL T+ + + + RLDFN Y R RL
Sbjct: 820 ATINKFDKNFSAHLLDLLARLSIYSTSDCEHGMASVISRLDFNGFYTERLERL 872
>gi|38454194 tubulin, gamma complex associated protein 4 [Homo
sapiens]
Length = 666
Score = 93.6 bits (231), Expect = 8e-19
Identities = 107/550 (19%), Positives = 225/550 (40%), Gaps = 90/550 (16%)
Query: 318 GLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLESSLTLRRLLVWTYDPKIR 377
G+ ++FC L L+ Y + L L + LG + L++ + + ++
Sbjct: 83 GIYLRAFCTGLDSVLQPYRQALLDLEQEF---------LG-DPHLSISHVNYFLDQFQLL 132
Query: 378 LKTLAALVDHCQGRK--GGELASAVHAYTKTGDPYMRSLVQHILSLVSHPVLSFLYRWIY 435
++ +V+ + +K G ++ V+ ++ G P +RS ++ IL++ + L W+
Sbjct: 133 FPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWML 192
Query: 436 DGELEDTYHEFFVASDP---------------------TVKTDRLWHD------------ 462
G L D + EFF+ P T K R D
Sbjct: 193 HGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAP 252
Query: 463 ---KYTLRKSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDA 519
+++LR ++PS++ + + K+L +G+S+ + T+ ++ K+ E A
Sbjct: 253 SLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFE---NQNVNLTRKGSILKNQEDTFAA 309
Query: 520 A-------DLFTDLENAFQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGD 572
LF+ ++ F+ +D +++L ++ ++ LL ++ ++ + LLG+G+
Sbjct: 310 ELHRLKQQPLFSLVD--FEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGE 367
Query: 573 FIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFDSPEILRRLDVRL------- 625
+ +D + L P T + +H++ + + D+ L L +
Sbjct: 368 LFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKD 427
Query: 626 ---------LEVSPGD---TGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRM 673
E SP + +GW L Y V P+ +FT + Y VF +L +R+
Sbjct: 428 ATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRV 487
Query: 674 EYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDE 733
+ L M L N + L + M + +QYY+ +VLE + +
Sbjct: 488 QAELQHCWALQMQRKHLKSNQTDAIKWR-----LRNHMAFLVDNLQYYLQVDVLESQFSQ 542
Query: 734 LWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIY 793
L +++ +D + I AH+ FL ++++ + LL + ++I++L ++ ++
Sbjct: 543 LLHQINSTRDFESIRLAHDHFLSNLLAQSFI------LLKPVFHCLNEILDLCHSFCSLV 596
Query: 794 RAALEELQRR 803
L L R
Sbjct: 597 SQNLGPLDER 606
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 89.4 bits (220), Expect = 1e-17
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 10/253 (3%)
Query: 542 SKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPEL---VRPATTLYQHNLT 598
+K +D + L H +A+R +LL+ G+F + L DLL +L P L L
Sbjct: 1500 NKAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLN 1559
Query: 599 GILETAVRATNAQFDSPEILR-RLDVRLLEVSPGDTGWDVFS---LDYHVDGPIATVFTR 654
+L A++ + D+P L ++ L DV S L Y VD P+ V T
Sbjct: 1560 SVLSKALQCS-LHGDTPHASNLSLALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITE 1618
Query: 655 ECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHF 714
C+S Y VF+FL + K M + L D+ H+ LL +M S Q + EM HF
Sbjct: 1619 GCLSKYSGVFSFLLQLKLMMWALKDVCF-HLKRTALLSHMAG-SVQFRQLQLFKHEMQHF 1676
Query: 715 IHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQ 774
+ +Q YI ++L +W E ++ DL+ I AH +L + R LL + ++N
Sbjct: 1677 VKVIQGYIANQILHVTWCEFRARLATVGDLEEIQRAHAEYLHKAVFRGLLTEKAAPVMNV 1736
Query: 775 LRAVFDQIIELQN 787
+ ++F +++ ++
Sbjct: 1737 IHSIFSLVLKFRS 1749
Score = 43.9 bits (102), Expect = 7e-04
Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 62/304 (20%)
Query: 245 ITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLS----RSLRDTAVRLSELGWL 300
+ E LV+D+L V G+ + + V+ ++S S+ ++E G
Sbjct: 347 VKECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTC 406
Query: 301 HNKIRRYTDQRSLDRSF--GLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGL 358
+ ++ ++ Q LD + GLV Q+F + L + L +YYR L
Sbjct: 407 YTRLSHFSLQPVLDSLYSKGLVFQAFTSGLRRYL-QYYRACV-----------------L 448
Query: 359 ESSLTLRRLLVWTYDPKI--RLKTLAALVD-------HCQGRK------GGELAS----- 398
+ TL L + K+ +L+ LA L C G G +L S
Sbjct: 449 STPPTLSLLTIGFLFKKLGRQLRYLAELCGVGAVLPGTCGGGPRAAFPTGVKLLSYLYQE 508
Query: 399 AVHAYTKTGDPYMRSLVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDR 458
A+H + P + SL L P F++ W+Y G D Y EF + + + R
Sbjct: 509 ALHNCSNEHYPVLLSL----LKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFR 564
Query: 459 ---LWHDKYTL----RKSMIPSFMTMDQSRKVLLIGKSINFL------HQVCHDQTPTTK 505
W Y L + +P F+ + + + GK+IN L H +C P +
Sbjct: 565 DKLYWTHGYVLISKEVEDCVPVFL-KHIAHDIYVCGKTINLLKLCCPRHYLCWSDVPVPR 623
Query: 506 MIAV 509
+ +
Sbjct: 624 ISVI 627
>gi|156616299 tubulin, gamma complex associated protein 5 isoform b
[Homo sapiens]
Length = 1024
Score = 79.7 bits (195), Expect = 1e-14
Identities = 87/343 (25%), Positives = 142/343 (41%), Gaps = 37/343 (10%)
Query: 450 SDPTVKTDRLWHDKYTLR-KSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPTTKM-- 506
S P V T++ + ++ +S+ S + +D LL +INF K
Sbjct: 610 STPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLL---AINFARMYLEQSDFHEKFAG 666
Query: 507 --IAVTKSAESPQDAADLFTDLENAFQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRR 564
+ V +S+ES T L + ID Y + L+ L K Y L++++QAMR
Sbjct: 667 GDVCVDRSSESVTCQTFELT-LRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYLQAMRN 725
Query: 565 YLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFDSPEILRRLDVR 624
+ L+ GD + + ++ T L L+ AV PE RL +
Sbjct: 726 FFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRY-----PEDSSRLSIS 780
Query: 625 LLEVSPGDTGWDVFSLD-----YHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTD 679
V V LD Y V P+ V + EC Y +VF L + K +Y L
Sbjct: 781 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV 840
Query: 680 IRKGHMCNA----KLLRNM-----------PEFSGVLHQCH---ILASEMVHFIHQMQYY 721
+ G + + +L + P+ V Q H +L +++HF++ + Y
Sbjct: 841 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY 900
Query: 722 ITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLL 764
I +L + E ++V++A+DLD +I H +L TI RCLL
Sbjct: 901 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLL 943
>gi|156616297 tubulin, gamma complex associated protein 5 isoform a
[Homo sapiens]
Length = 1024
Score = 79.7 bits (195), Expect = 1e-14
Identities = 87/343 (25%), Positives = 142/343 (41%), Gaps = 37/343 (10%)
Query: 450 SDPTVKTDRLWHDKYTLR-KSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPTTKM-- 506
S P V T++ + ++ +S+ S + +D LL +INF K
Sbjct: 610 STPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLL---AINFARMYLEQSDFHEKFAG 666
Query: 507 --IAVTKSAESPQDAADLFTDLENAFQGKIDAAYFETSKYLLDVLNKKYSLLDHMQAMRR 564
+ V +S+ES T L + ID Y + L+ L K Y L++++QAMR
Sbjct: 667 GDVCVDRSSESVTCQTFELT-LRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYLQAMRN 725
Query: 565 YLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFDSPEILRRLDVR 624
+ L+ GD + + ++ T L L+ AV PE RL +
Sbjct: 726 FFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRY-----PEDSSRLSIS 780
Query: 625 LLEVSPGDTGWDVFSLD-----YHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTD 679
V V LD Y V P+ V + EC Y +VF L + K +Y L
Sbjct: 781 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV 840
Query: 680 IRKGHMCNA----KLLRNM-----------PEFSGVLHQCH---ILASEMVHFIHQMQYY 721
+ G + + +L + P+ V Q H +L +++HF++ + Y
Sbjct: 841 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY 900
Query: 722 ITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLL 764
I +L + E ++V++A+DLD +I H +L TI RCLL
Sbjct: 901 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLL 943
>gi|13540602 TGF-beta induced apoptosis protein 12 [Homo sapiens]
Length = 543
Score = 34.7 bits (78), Expect = 0.41
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 104 PRRQPSKVSSYATLFAQALPRDAHSTPYYYARPQTLPLSYQ-----DRSAQSAQSSGSVG 158
P +PS +S + AQ + + A +T + Q +R SSGS
Sbjct: 290 PDEEPSPTASCSLTGAQG--SETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSA 347
Query: 159 S--SGISSIGLCALSGPAPAPQSLLPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQA 216
S S I S+G+C L P P+ L PG + AP + S L +T ++ P++
Sbjct: 348 SLDSSIESLGVCILEEPLAVPEELCPGLT--APILIQAQLPPGSSVLCFTENSDHPTAST 405
Query: 217 TTS 219
S
Sbjct: 406 VNS 408
>gi|24308223 hypothetical protein LOC57577 [Homo sapiens]
Length = 936
Score = 34.7 bits (78), Expect = 0.41
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 766 SDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAE 825
SDSR L+ LR Q++ A+ A++ + R EKKK++E E + A+
Sbjct: 635 SDSRNSLSGLRRKPKQLMTPHPILKAMEERAIQRAECRRILAEKKKKQE-EEKLAQLKAQ 693
Query: 826 EEEENKRIGEFKES 839
EEE KR E KE+
Sbjct: 694 EEERQKREAEEKEA 707
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 33.1 bits (74), Expect = 1.2
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 782 IIELQNAQDAIYRAALEELQRRL------QFEEKKKQREIEGQWGVTAAEEEEENKRIGE 835
++ L+ A+ ++Y L++ + RL + EE+K+QR+ E + +EEEE +R E
Sbjct: 761 VMRLKAARQSVYEEKLKQFEERLAEERHNRLEERKRQRKEERRITYYREKEEEEQRRAEE 820
>gi|21314654 ring finger protein 139 [Homo sapiens]
Length = 664
Score = 33.1 bits (74), Expect = 1.2
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 738 VQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAAL 797
++ A + D + + F D I + + DS + + AV + + +
Sbjct: 257 LRMANETDSFFISWDDFWDLICNLIISGCDSTLTVLGMSAVISSVAHYLGLGILAFIGST 316
Query: 798 EELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRILTHFYQGI 857
EE RRL F + Q G++ EE R+ MC L + HF G+
Sbjct: 317 EEDDRRLGFVAPVLFFILALQTGLSGLRPEERLIRLSR------NMCLLLTAVLHFIHGM 370
Query: 858 VQQFLVLLTTSSDESLR 874
L+ L+ S S R
Sbjct: 371 TDPVLMSLSASHVSSFR 387
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.1 bits (74), Expect = 1.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 154 SGSVGSSGISSIGLCALSGPAPAPQSLLPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPS 213
S SV +S +GL P+P SL+PG S+Q G G+ T+ S
Sbjct: 374 SRSVSCDNVSKVGL-------PSPSSLVPGSSSQLSGNGNSGTSGPSGSTTSKTTSESSS 426
Query: 214 SQATTSKGVPSAVSR 228
S + + KG S S+
Sbjct: 427 SPSASLKGPTSQESQ 441
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 33.1 bits (74), Expect = 1.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 154 SGSVGSSGISSIGLCALSGPAPAPQSLLPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPS 213
S SV +S +GL P+P SL+PG S+Q G G+ T+ S
Sbjct: 374 SRSVSCDNVSKVGL-------PSPSSLVPGSSSQLSGNGNSGTSGPSGSTTSKTTSESSS 426
Query: 214 SQATTSKGVPSAVSR 228
S + + KG S S+
Sbjct: 427 SPSASLKGPTSQESQ 441
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 32.7 bits (73), Expect = 1.6
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 798 EELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRILTHFYQGI 857
+E Q + Q++E++ +E + Q AE+EE+ K+ G+ +E +PK S L+ L Q +
Sbjct: 875 QEQQSQKQWQEEEMWKEEQKQATPKQAEQEEKQKQRGQEEEELPK--SSLQRLEEGTQKM 932
Query: 858 VQQFLVL 864
Q L+L
Sbjct: 933 KTQGLLL 939
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.7 bits (73), Expect = 1.6
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 681 RKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQ 740
RKG + + + + S ++ Q H + ++ ++M YY E E S E+ K+
Sbjct: 358 RKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYY--GEEHELSPKEISEKLVL 415
Query: 741 AQDLDHIIAAHEVFLDTIISRCLLDSDS-------------RALLNQLRAVFDQIIELQN 787
AQ + I + + F R L+D ++ + L N+ R +F ++E
Sbjct: 416 AQKMLEEIRSRQPF---FTQRELVDEEADEAYELLSQAESWQRLHNETRTLFPVVLE--- 469
Query: 788 AQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
Q Y A L +LQ L + R+ E TAA + + K+ +E +
Sbjct: 470 -QLDDYNAKLSDLQEALD-QALNYVRDAEDMNRATAARQRDHEKQQERVREQM 520
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 32.7 bits (73), Expect = 1.6
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 681 RKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQ 740
RKG + + + + S ++ Q H + ++ ++M YY E E S E+ K+
Sbjct: 365 RKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYY--GEEHELSPKEISEKLVL 422
Query: 741 AQDLDHIIAAHEVFLDTIISRCLLDSDS-------------RALLNQLRAVFDQIIELQN 787
AQ + I + + F R L+D ++ + L N+ R +F ++E
Sbjct: 423 AQKMLEEIRSRQPF---FTQRELVDEEADEAYELLSQAESWQRLHNETRTLFPVVLE--- 476
Query: 788 AQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
Q Y A L +LQ L + R+ E TAA + + K+ +E +
Sbjct: 477 -QLDDYNAKLSDLQEALD-QALNYVRDAEDMNRATAARQRDHEKQQERVREQM 527
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.7 bits (73), Expect = 1.6
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 681 RKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQ 740
RKG + + + + S ++ Q H + ++ ++M YY E E S E+ K+
Sbjct: 358 RKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYY--GEEHELSPKEISEKLVL 415
Query: 741 AQDLDHIIAAHEVFLDTIISRCLLDSDS-------------RALLNQLRAVFDQIIELQN 787
AQ + I + + F R L+D ++ + L N+ R +F ++E
Sbjct: 416 AQKMLEEIRSRQPF---FTQRELVDEEADEAYELLSQAESWQRLHNETRTLFPVVLE--- 469
Query: 788 AQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
Q Y A L +LQ L + R+ E TAA + + K+ +E +
Sbjct: 470 -QLDDYNAKLSDLQEALD-QALNYVRDAEDMNRATAARQRDHEKQQERVREQM 520
>gi|31543559 radial spoke 3 homolog [Homo sapiens]
Length = 560
Score = 32.3 bits (72), Expect = 2.1
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 752 EVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKK 811
EV + I + LL+ L LRA + EL+N++ RA ++ L+ + + ++K
Sbjct: 319 EVLVGKTIEQSLLEVMEEEELANLRASQREYEELRNSE----RAEVQRLEEQERRHREEK 374
Query: 812 QREIEGQWGVTAAEEEEENKRIGE------FKESIPKMCSQLRILTHFYQGI 857
+R + QW + E K + +P + LR +FY I
Sbjct: 375 ERRKKQQWEIMHKHNETSQKIAARAFAQRYLADLLPSVFGSLRDSGYFYDPI 426
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 32.3 bits (72), Expect = 2.1
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 771 LLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEEN 830
L QLRAV +Q+ A+ + + + +R+ + +EKKK+R+ E G A+E+++
Sbjct: 523 LQEQLRAVHEQLA-------ALSQGPISKPKRKREKKEKKKKRKAEKHRGRAGADEDDKG 575
Query: 831 KR 832
R
Sbjct: 576 PR 577
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 32.3 bits (72), Expect = 2.1
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 771 LLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEEN 830
L QLRAV +Q+ A+ + + + +R+ + +EKKK+R+ E G A+E+++
Sbjct: 523 LQEQLRAVHEQLA-------ALSQGPISKPKRKREKKEKKKKRKAEKHRGRAGADEDDKG 575
Query: 831 KR 832
R
Sbjct: 576 PR 577
>gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens]
Length = 757
Score = 32.3 bits (72), Expect = 2.1
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 26/155 (16%)
Query: 696 EFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFL 755
+FS L++C ILA + + +Y T ++ Q+ Q L I E+
Sbjct: 210 QFSSGLNKCVILALVIAISMGFGHFYGTIQI------------QKRQQLVRKIHEDEL-- 255
Query: 756 DTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREI 815
+D + L+Q + + I+ ++ ++ + R ++ FE +K
Sbjct: 256 ----------NDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQKTNLAT 305
Query: 816 EGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRIL 850
E Q+ + E+EE K + +E + K+ Q+RIL
Sbjct: 306 ENQYLRVSLEKEE--KALSSLQEELNKLREQIRIL 338
>gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens]
Length = 757
Score = 32.3 bits (72), Expect = 2.1
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 26/155 (16%)
Query: 696 EFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFL 755
+FS L++C ILA + + +Y T ++ Q+ Q L I E+
Sbjct: 210 QFSSGLNKCVILALVIAISMGFGHFYGTIQI------------QKRQQLVRKIHEDEL-- 255
Query: 756 DTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQFEEKKKQREI 815
+D + L+Q + + I+ ++ ++ + R ++ FE +K
Sbjct: 256 ----------NDMKDYLSQCQQEQESFIDYKSLKENLARCWTLTEAEKMSFETQKTNLAT 305
Query: 816 EGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRIL 850
E Q+ + E+EE K + +E + K+ Q+RIL
Sbjct: 306 ENQYLRVSLEKEE--KALSSLQEELNKLREQIRIL 338
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 32.0 bits (71), Expect = 2.7
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 784 ELQNAQDAIYRAA---LEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
E Q ++A+ R EE +RR Q E +KQ E +W A EEEE +R+ E + +
Sbjct: 806 ERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKW---AREEEEAQRRLEENRLRM 862
Query: 841 PKMCSQLR 848
+ ++LR
Sbjct: 863 EEEAARLR 870
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 32.0 bits (71), Expect = 2.7
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 784 ELQNAQDAIYRAA---LEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
E Q ++A+ R EE +RR Q E +KQ E +W A EEEE +R+ E + +
Sbjct: 833 ERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKW---AREEEEAQRRLEENRLRM 889
Query: 841 PKMCSQLR 848
+ ++LR
Sbjct: 890 EEEAARLR 897
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 2.7
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 784 ELQNAQDAIYRAA---LEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
E Q ++A+ R EE +RR Q E +KQ E +W A EEEE +R+ E + +
Sbjct: 812 ERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKW---AREEEEAQRRLEENRLRM 868
Query: 841 PKMCSQLR 848
+ ++LR
Sbjct: 869 EEEAARLR 876
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 2.7
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 784 ELQNAQDAIYRAA---LEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI 840
E Q ++A+ R EE +RR Q E +KQ E +W A EEEE +R+ E + +
Sbjct: 812 ERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKW---AREEEEAQRRLEENRLRM 868
Query: 841 PKMCSQLR 848
+ ++LR
Sbjct: 869 EEEAARLR 876
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 137 QTLPLSYQDRS-AQSAQSSGSVGSSGISSIGLCALSGPAPAPQSLLPGQSNQAPG 190
+T L+ + R+ + S+ SGS +SG SSIG+ ++ P P+P ++ P APG
Sbjct: 223 RTASLNQRPRTHSGSSGGSGSRENSGSSSIGI-PIAVPTPSPPTIGPAAPGSAPG 276
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 137 QTLPLSYQDRS-AQSAQSSGSVGSSGISSIGLCALSGPAPAPQSLLPGQSNQAPG 190
+T L+ + R+ + S+ SGS +SG SSIG+ ++ P P+P ++ P APG
Sbjct: 228 RTASLNQRPRTHSGSSGGSGSRENSGSSSIGI-PIAVPTPSPPTIGPAAPGSAPG 281
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 137 QTLPLSYQDRS-AQSAQSSGSVGSSGISSIGLCALSGPAPAPQSLLPGQSNQAPG 190
+T L+ + R+ + S+ SGS +SG SSIG+ ++ P P+P ++ P APG
Sbjct: 228 RTASLNQRPRTHSGSSGGSGSRENSGSSSIGI-PIAVPTPSPPTIGPAAPGSAPG 281
>gi|226342869 TBC1 domain family, member 15 isoform 2 [Homo sapiens]
Length = 682
Score = 31.6 bits (70), Expect = 3.5
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 798 EELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRILTHFYQGI 857
+E + +LQ ++ + ++ QW + E+E+ N R+ +++ I K ++ FY+G
Sbjct: 360 KEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQ 419
Query: 858 VQQFLVLL 865
L+LL
Sbjct: 420 DNPGLILL 427
>gi|226342867 TBC1 domain family, member 15 isoform 3 [Homo sapiens]
Length = 696
Score = 31.6 bits (70), Expect = 3.5
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 798 EELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRILTHFYQGI 857
+E + +LQ ++ + ++ QW + E+E+ N R+ +++ I K ++ FY+G
Sbjct: 374 KEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQ 433
Query: 858 VQQFLVLL 865
L+LL
Sbjct: 434 DNPGLILL 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,604,881
Number of Sequences: 37866
Number of extensions: 1434609
Number of successful extensions: 5521
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 5435
Number of HSP's gapped (non-prelim): 134
length of query: 907
length of database: 18,247,518
effective HSP length: 111
effective length of query: 796
effective length of database: 14,044,392
effective search space: 11179336032
effective search space used: 11179336032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.