Guide to the Human Genome
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Name: TBC1D15 Sequence: fasta or formatted (682aa) NCBI GI: 226342869
Description:

TBC1 domain family, member 15 isoform 2

Referenced in:

Rab

Other entries for this name:
alt prot [713aa] TBC1 domain family, member 15 isoform 1
alt prot [696aa] TBC1 domain family, member 15 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         24           1
 C cysteine            2.5         17           2
 D aspartate           6.7         46           2
 E glutamate           7.6         52           2
 F phenylalanine       4.1         28           1
 G glycine             5.1         35           2
 H histidine           2.1         14           1
 I isoleucine          5.3         36           2
 K lysine              6.2         42           2
 L leucine            11.4         78           3
 M methionine          3.2         22           1
 N asparagine          3.8         26           1
 P proline             4.3         29           2
 Q glutamine           5.4         37           2
 R arginine            4.8         33           2
 S serine              9.1         62           3
 T threonine           4.3         29           2
 V valine              5.0         34           2
 W tryptophan          1.9         13           1
 Y tyrosine            3.7         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 15 isoform 2 
TBC1D15               0.972   TBC1 domain family, member 15 isoform 3 
TBC1D15               0.963   TBC1 domain family, member 15 isoform 1 
TBC1D17               0.417   TBC1 domain family, member 17 
TBC1D16               0.129   TBC1 domain family, member 16 
TBC1D25               0.112   TBC1 domain family, member 25 
TBC1D21               0.081   TBC1 domain family, member 21 
SGSM2                 0.076   RUN and TBC1 domain containing 1 isoform 2 
SGSM2                 0.076   RUN and TBC1 domain containing 1 isoform 1 
SGSM1                 0.073   RUN and TBC1 domain containing 2 isoform 4 
SGSM1                 0.073   RUN and TBC1 domain containing 2 isoform 3 
SGSM1                 0.073   RUN and TBC1 domain containing 2 isoform 2 
SGSM1                 0.073   RUN and TBC1 domain containing 2 isoform 1 
TBC1D22B              0.045   TBC1 domain family, member 22B 
TBC1D22A              0.045   TBC1 domain family, member 22A 
TBC1D13               0.041   TBC1 domain family, member 13 
USP6NL                0.031   USP6 N-terminal like isoform 1 
USP6NL                0.031   USP6 N-terminal like isoform 2 
TBC1D1                0.031   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D2B               0.029   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.029   TBC1 domain family, member 2B isoform b 
TBC1D4                0.028   TBC1 domain family, member 4 
GRTP1                 0.026   growth hormone regulated TBC protein 1 
TBC1D10A              0.025   TBC1 domain family, member 10A 
RABGAP1L              0.024   RAB GTPase activating protein 1-like isoform A [Homo...
RABGAP1               0.023   RAB GTPase activating protein 1 
SGSM3                 0.023   small G protein signaling modulator 3 
EVI5L                 0.022   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.022   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D10B              0.022   TBC1 domain family, member 10B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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