Guide to the Human Genome
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Name: TUBGCP4 Sequence: fasta or formatted (666aa) NCBI GI: 38454194
Description:

tubulin, gamma complex associated protein 4

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         34           2
 C cysteine            1.4          9           1
 D aspartate           4.7         31           3
 E glutamate           6.3         42           3
 F phenylalanine       5.1         34           2
 G glycine             5.7         38           2
 H histidine           4.7         31           2
 I isoleucine          4.7         31           2
 K lysine              4.5         30           1
 L leucine            15.5        103           3
 M methionine          1.7         11           1
 N asparagine          3.3         22           1
 P proline             3.8         25           2
 Q glutamine           8.1         54           3
 R arginine            4.5         30           2
 S serine              7.5         50           2
 T threonine           3.5         23           1
 V valine              6.3         42           3
 W tryptophan          1.1          7           1
 Y tyrosine            2.9         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, gamma complex associated protein 4 
TUBGCP2               0.056   tubulin, gamma complex associated protein 2 
TUBGCP3               0.053   tubulin, gamma complex associated protein 3 
TUBGCP6               0.045   tubulin, gamma complex associated protein 6 
TUBGCP5               0.018   tubulin, gamma complex associated protein 5 isoform...
TUBGCP5               0.018   tubulin, gamma complex associated protein 5 isoform...
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
KRT78                 0.006   keratin 5b 
KIAA1009              0.005   KIAA1009 protein 
DES                   0.005   desmin 
ADSSL1                0.005   adenylosuccinate synthase like 1 isoform 1 
ADSSL1                0.005   adenylosuccinate synthase like 1 isoform 2 
FAM9B                 0.004   family with sequence similarity 9, member B 
KIAA0182              0.004   genetic suppressor element 1 isoform 2 
KIAA0182              0.004   genetic suppressor element 1 isoform 1 
KIAA1524              0.004   p90 autoantigen 
SBK2                  0.004   SH3-binding domain kinase family, member 2 
CEP152                0.004   centrosomal protein 152kDa 
FANCM                 0.004   Fanconi anemia, complementation group M 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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