Guide to the Human Genome
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Name: TUBGCP2 Sequence: fasta or formatted (902aa) NCBI GI: 5729840
Description:

tubulin, gamma complex associated protein 2

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         74           4
 C cysteine            1.2         11           1
 D aspartate           5.1         46           2
 E glutamate           7.4         67           3
 F phenylalanine       4.1         37           2
 G glycine             4.1         37           2
 H histidine           3.2         29           2
 I isoleucine          4.5         41           2
 K lysine              6.2         56           2
 L leucine            13.2        119           2
 M methionine          2.9         26           2
 N asparagine          2.8         25           1
 P proline             3.7         33           2
 Q glutamine           5.0         45           3
 R arginine            5.3         48           1
 S serine              7.1         64           2
 T threonine           5.5         50           3
 V valine              6.1         55           2
 W tryptophan          0.9          8           1
 Y tyrosine            3.4         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, gamma complex associated protein 2 
TUBGCP3               0.103   tubulin, gamma complex associated protein 3 
TUBGCP4               0.042   tubulin, gamma complex associated protein 4 
TUBGCP6               0.030   tubulin, gamma complex associated protein 6 
TUBGCP5               0.015   tubulin, gamma complex associated protein 5 isoform...
TUBGCP5               0.015   tubulin, gamma complex associated protein 5 isoform...
DGKH                  0.007   diacylglycerol kinase, eta isoform 1 
DGKH                  0.007   diacylglycerol kinase, eta isoform 2 
RPGRIP1               0.006   retinitis pigmentosa GTPase regulator interacting p...
GOLGA3                0.005   Golgi autoantigen, golgin subfamily a, 3 
POLR1A                0.005   DNA-directed RNA polymerase I A 
PDE4DIP               0.005   phosphodiesterase 4D interacting protein isoform 1 ...
KIAA1751              0.005   hypothetical protein LOC85452 
CLIP1                 0.005   restin isoform b 
CLIP1                 0.005   restin isoform a 
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
C14orf145             0.004   hypothetical protein LOC145508 
ERCC5                 0.004   XPG-complementing protein 
ROBO4                 0.004   roundabout homolog 4, magic roundabout 
UGP2                  0.004   UDP-glucose pyrophosphorylase 2 isoform b 
UGP2                  0.004   UDP-glucose pyrophosphorylase 2 isoform a 
FICD                  0.004   Huntingtin interacting protein E 
LRRC16A               0.003   leucine rich repeat containing 16A 
KIF5B                 0.003   kinesin family member 5B 
LOC730429             0.003   PREDICTED: similar to ubiquitin protein ligase E3 c...
LRRFIP1               0.003   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.003   leucine rich repeat (in FLII) interacting protein 1...
NGEF                  0.003   neuronal guanine nucleotide exchange factor isoform...
NGEF                  0.003   neuronal guanine nucleotide exchange factor isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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