Guide to the Human Genome
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Name: RSPH3 Sequence: fasta or formatted (560aa) NCBI GI: 31543559
Description:

radial spoke 3 homolog

Referenced in:

Additional Structural Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         44           2
 C cysteine            1.8         10           1
 D aspartate           4.8         27           1
 E glutamate          11.6         65           4
 F phenylalanine       2.1         12           1
 G glycine             5.7         32           2
 H histidine           2.0         11           1
 I isoleucine          2.7         15           2
 K lysine              4.1         23           2
 L leucine            10.5         59           3
 M methionine          2.9         16           1
 N asparagine          2.0         11           1
 P proline             7.9         44           3
 Q glutamine           5.0         28           2
 R arginine            9.8         55           3
 S serine              6.2         35           2
 T threonine           5.5         31           2
 V valine              3.8         21           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radial spoke 3 homolog 
TCHH                  0.026   trichohyalin 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EIF5B                 0.018   eukaryotic translation initiation factor 5B 
TNNT2                 0.018   troponin T type 2, cardiac isoform 1 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform b 
TNNT2                 0.016   troponin T type 2, cardiac isoform 4 
TNNT1                 0.016   troponin T1, skeletal, slow isoform c 
TNNT1                 0.016   troponin T1, skeletal, slow isoform b 
TNNT1                 0.016   troponin T1, skeletal, slow isoform a 
INCENP                0.015   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.015   inner centromere protein antigens 135/155kDa isofor...
ENAH                  0.015   enabled homolog isoform a 
ENAH                  0.015   enabled homolog isoform b 
TNNT2                 0.015   troponin T type 2, cardiac isoform 3 
TNNT2                 0.015   troponin T type 2, cardiac isoform 2 
MYO6                  0.015   myosin VI 
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.015   mitogen-activated protein kinase kinase kinase kinas...
FAM179B               0.015   hypothetical protein LOC23116 
ZC3H18                0.015   zinc finger CCCH-type containing 18 
TCHP                  0.015   trichoplein 
TCHP                  0.015   trichoplein 
ITSN1                 0.014   intersectin 1 isoform ITSN-s 
ITSN1                 0.014   intersectin 1 isoform ITSN-l 
CALD1                 0.014   caldesmon 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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