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Search of human proteins with 54112403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
(2997 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 6093 0.0
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 2630 0.0
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 2135 0.0
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 2026 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 545 e-154
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 531 e-150
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 526 e-148
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 526 e-148
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 526 e-148
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 518 e-146
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 503 e-141
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 404 e-112
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 401 e-111
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 395 e-109
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 390 e-108
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 390 e-108
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 380 e-104
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 370 e-101
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 367 e-101
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 367 e-101
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 278 6e-74
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 277 1e-73
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 277 1e-73
gi|4557565 excision repair cross-complementing rodent repair def... 254 9e-67
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 228 9e-59
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 6093 bits (15806), Expect = 0.0
Identities = 2997/2997 (100%), Positives = 2997/2997 (100%)
Query: 1 MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTN 60
MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTN
Sbjct: 1 MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTN 60
Query: 61 QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGG 120
QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGG
Sbjct: 61 QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGG 120
Query: 121 GQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ 180
GQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ
Sbjct: 121 GQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ 180
Query: 181 GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ 240
GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ
Sbjct: 181 GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ 240
Query: 241 QSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP 300
QSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP
Sbjct: 241 QSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP 300
Query: 301 SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG 360
SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG
Sbjct: 301 SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG 360
Query: 361 LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI 420
LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI
Sbjct: 361 LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI 420
Query: 421 PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGC 480
PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGC
Sbjct: 421 PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGC 480
Query: 481 PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL 540
PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL
Sbjct: 481 PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL 540
Query: 541 HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK 600
HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK
Sbjct: 541 HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK 600
Query: 601 KKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPK 660
KKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPK
Sbjct: 601 KKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPK 660
Query: 661 EKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE 720
EKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE
Sbjct: 661 EKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE 720
Query: 721 GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR 780
GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR
Sbjct: 721 GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR 780
Query: 781 DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQW 840
DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQW
Sbjct: 781 DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQW 840
Query: 841 ASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP 900
ASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP
Sbjct: 841 ASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP 900
Query: 901 VTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSR 960
VTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSR
Sbjct: 901 VTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSR 960
Query: 961 EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL 1020
EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL
Sbjct: 961 EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL 1020
Query: 1021 VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI 1080
VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI
Sbjct: 1021 VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI 1080
Query: 1081 ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT 1140
ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT
Sbjct: 1081 ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT 1140
Query: 1141 VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 1200
VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP
Sbjct: 1141 VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP 1200
Query: 1201 KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING
Sbjct: 1201 KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
Query: 1261 AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD 1320
AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD
Sbjct: 1261 AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD 1320
Query: 1321 ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT 1380
ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
Sbjct: 1321 ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT 1380
Query: 1381 CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ 1440
CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ
Sbjct: 1381 CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ 1440
Query: 1441 SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI 1500
SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI
Sbjct: 1441 SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI 1500
Query: 1501 ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK 1560
ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK
Sbjct: 1501 ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK 1560
Query: 1561 QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR 1620
QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR
Sbjct: 1561 QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR 1620
Query: 1621 WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV 1680
WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV
Sbjct: 1621 WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV 1680
Query: 1681 NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKKHLKHHCNKVLL 1740
NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKKHLKHHCNKVLL
Sbjct: 1681 NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKKHLKHHCNKVLL 1740
Query: 1741 RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKSLLIGVFK 1800
RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKSLLIGVFK
Sbjct: 1741 RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKSLLIGVFK 1800
Query: 1801 HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT 1860
HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT
Sbjct: 1801 HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT 1860
Query: 1861 RTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAY 1920
RTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAY
Sbjct: 1861 RTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAY 1920
Query: 1921 QRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVST 1980
QRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVST
Sbjct: 1921 QRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVST 1980
Query: 1981 FGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDLS 2040
FGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDLS
Sbjct: 1981 FGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDLS 2040
Query: 2041 SIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDL 2100
SIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDL
Sbjct: 2041 SIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDL 2100
Query: 2101 LVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVGFVQTPPVISSA 2160
LVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVGFVQTPPVISSA
Sbjct: 2101 LVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVGFVQTPPVISSA 2160
Query: 2161 HIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKG 2220
HIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKG
Sbjct: 2161 HIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKG 2220
Query: 2221 VEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTAR 2280
VEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTAR
Sbjct: 2221 VEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTAR 2280
Query: 2281 DETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMF 2340
DETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMF
Sbjct: 2281 DETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMF 2340
Query: 2341 DFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR 2400
DFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR
Sbjct: 2341 DFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR 2400
Query: 2401 RRRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSS 2460
RRRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSS
Sbjct: 2401 RRRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSS 2460
Query: 2461 LSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE 2520
LSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE
Sbjct: 2461 LSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE 2520
Query: 2521 GLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRL 2580
GLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRL
Sbjct: 2521 GLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRL 2580
Query: 2581 VGEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINT 2640
VGEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINT
Sbjct: 2581 VGEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINT 2640
Query: 2641 LTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMF 2700
LTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMF
Sbjct: 2641 LTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMF 2700
Query: 2701 DRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQN 2760
DRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQN
Sbjct: 2701 DRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQN 2760
Query: 2761 LQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL 2820
LQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL
Sbjct: 2761 LQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL 2820
Query: 2821 SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP 2880
SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP
Sbjct: 2821 SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP 2880
Query: 2881 AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAAD 2940
AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAAD
Sbjct: 2881 AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAAD 2940
Query: 2941 KAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNENDE 2997
KAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNENDE
Sbjct: 2941 KAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNENDE 2997
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 2630 bits (6817), Expect = 0.0
Identities = 1523/3119 (48%), Positives = 1941/3119 (62%), Gaps = 362/3119 (11%)
Query: 1 MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQ-PSLHHPST 59
M DP MM F +D N+F E LEGL + + + + ++ + F L SL+H
Sbjct: 1 MTDP-MMDFF-DDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQG 58
Query: 60 NQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPV-PQVPHGGS 118
K+T F+ NQ++ K H ++Q +P + SPHSQ++ P+ PQ
Sbjct: 59 TPTHQKMTDFEQLNQFDSIKFHHVNQS----FGSPAEHVLSPHSQFNCSPIHPQ------ 108
Query: 119 GGGQMGVYPGMQNERHGQSFVDSSSMWGPR-AVQVPDQIRAPYQQQQPQPQPPQPAPSGP 177
G++P + D S MWG + A + +Q +P+ QQ
Sbjct: 109 -NQPNGLFPDVS---------DGSPMWGHQTATTISNQNGSPFHQQ-------------- 144
Query: 178 PAQGHPQHMQQMGSYMARGDFSMQQHGQPQ---------QRMSQFSQGQEGLNQGNPFIA 228
GH M Q S++A DF++ Q + Q Q + + GQ L+Q F+
Sbjct: 145 ---GHSHSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMN 201
Query: 229 TSGPG--HLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVR 286
SGP +++H PQ + + S+QQF + + H + Q+G
Sbjct: 202 VSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAHFHKCSSH--------QEG--- 250
Query: 287 PQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPR 346
NF+ S + S +++NS Q+S + YS + + N+ + + L +N NQ++
Sbjct: 251 ----NFNGPSPNMTSCSVSNSQQFSSH-YSFSSNHISPNSLLQSSAVLASNHT-NQTLSD 304
Query: 347 YPNAVGFPSNSG-QGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNP 405
+ + F + G + Q ++P+ SLN N Q +H S PQG Y++
Sbjct: 305 FTGSNSFSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSNS------------ 352
Query: 406 AGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMS 465
++ P P V S M H + G + + N+ + Q+ PF G+
Sbjct: 353 ------KLSPVHMNFPDPVDSGTQMGHFNDHVETNGFSSL-EENLLHQVESQTEPFTGLD 405
Query: 466 SAPRELTGHMRPNGCPGVGLGDPQAIQERLIP--GQQHPGQQPSFQQLPTCPPLQPHPGL 523
P +L +QE L+P + GQ S L Q
Sbjct: 406 --PEDL-------------------LQEGLLPHFDESTFGQDNSSHILDHDLDRQ---FT 441
Query: 524 HHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKS 583
H + P Q Q ++ H H + L++ P + G
Sbjct: 442 SHLVTRPSDMAQTQLQSQARSWHSSFSNHQHLHDRNHLCLQRQPPSSKKSDGSGTYTKLQ 501
Query: 584 DDYLPSIEQQPQQKK-----KKKKNNHIVAEDPSKGF--GKDDFPGGVDNQELNRNSLDG 636
+ + + ++ Q+KK K++K N I++E +K G+ + P + + S++G
Sbjct: 502 NTQVRVMSEKKQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPTASVEG 561
Query: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSK 696
+E+K ++ +SK PK+ KK KT SK
Sbjct: 562 KEEKKGRRMKSK----------------------------PKDKDSKKTKTC------SK 587
Query: 697 KSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKR 756
K L KK + E SD ++ P + +D QKRRS+RQ+KR
Sbjct: 588 LKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTL-----KDQDSQKRRSNRQIKR 642
Query: 757 KRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVD----AEGPVVEKIMSSRSVK 812
K+Y ED+E K S+EE + ++S + Q V+ + +V+KI+SSR+VK
Sbjct: 643 KKYAEDIEGKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTVK 702
Query: 813 KQKESGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNK-FLSE 871
K+ G ++ EEF+VKYKN+SYLHC+WA+ E L KDKRIQQKIKRFK +Q Q F ++
Sbjct: 703 KEISPGVMIDTEEFFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFAD 762
Query: 872 IEDELFNPDYVEVDRIMDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIE 930
+E+E FNPDYVEVDR+++ + D D GEPV +YLVKWCSLPYEDSTWE ++D+D AKIE
Sbjct: 763 MEEEPFNPDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIE 822
Query: 931 EFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCI 990
EFE+L + P+T R++RPP++ WKK + SR+YKN N+LREYQLEG+NWLLFNWYN RNCI
Sbjct: 823 EFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCI 882
Query: 991 LADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQ 1050
LADEMGLGKTIQSITFLYEI L GI GPFL+IAPLSTI NWEREFRTWT++NVVVYHGS
Sbjct: 883 LADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSL 942
Query: 1051 ASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRL 1110
SR+ IQ YEMYF+D QGR+I+G+Y+F AIITTFEMIL C EL I WRCV+IDEAHRL
Sbjct: 943 ISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRL 1002
Query: 1111 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLK 1170
KN+NCKLLEGLK+M+LEHKVLLTGTPLQNTVEELFSLLHFLEP RFPSE+TFMQEFGDLK
Sbjct: 1003 KNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLK 1062
Query: 1171 TEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLS 1230
TEEQVQKLQAILKPMMLRRLKEDVEK LAPKEETIIEVELTNIQKKYYRAILEKNF+FLS
Sbjct: 1063 TEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS 1122
Query: 1231 KGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAG 1290
KG GQ NVPNL+NTMMELRKCCNHPYLI GAEEKIL EF++T+N + DF LQAMIQ+AG
Sbjct: 1123 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAG 1182
Query: 1291 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1350
KLVLIDKLLPK+KAGGH+VLIFSQMVRCLDILEDYLI +RY YERIDGRVRGNLRQAAID
Sbjct: 1183 KLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAID 1242
Query: 1351 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1410
RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ+K+VK
Sbjct: 1243 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVK 1302
Query: 1411 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
+YRL+TRNSYEREMFD+ASLKLGLDKAVLQSMSGRE+ G+QQLSKKEIEDLLR+GAYG
Sbjct: 1303 VYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYG 1362
Query: 1471 ALMDEEDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNF 1530
A+M+EEDEGSKFCEEDIDQILLRRT TITIESEG+GSTFAKASFVASGNRTDISLDDPNF
Sbjct: 1363 AIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNF 1422
Query: 1531 WQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAK 1590
WQKWAKKAE+DI+A++GRN+LVIDTPR+RKQTR +SA K DEL E S+ ES+ +EKP K
Sbjct: 1423 WQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATK-DELAELSEAESEGDEKP--K 1479
Query: 1591 PRRPQDKSQGYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYC 1650
RRP D+S GY R+ECFRVEKNLLVYGWGRW +ILSHGR+KRQL E DVE ICR +L YC
Sbjct: 1480 LRRPCDRSNGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYC 1539
Query: 1651 LNHYKGDENIKSFIWDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDA 1710
L HY+GDE IK FIWDLITPT DGQTR L NH GLSAPVPRGRKGKKVK Q++ +Q A
Sbjct: 1540 LVHYRGDEKIKGFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKA 1599
Query: 1711 DWLASCNPDALFQEDSYKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEAD 1770
+WL NP+ L Q++ YKKH+KHHCNKVLLRVRMLYYL+QEVIG++ K+ +G D+S+ D
Sbjct: 1600 EWLRKYNPEQLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDID 1659
Query: 1771 VWIPEPFHAEVPADWWDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIA 1830
VW+PEP H+EVPA+WWD +ADKSLLIGVFKHGYEKYN++RADPALCFLERVG PD KA+A
Sbjct: 1660 VWVPEPDHSEVPAEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVA 1719
Query: 1831 AEQRGTDMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGK 1890
AEQR D + D + EDPEYKP FKD+I++ +SP + + G+
Sbjct: 1720 AEQRANDYM---------DGDVEDPEYKPAPAIFKDDIEDDVSSPG----DLVIADGDGQ 1766
Query: 1891 HSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQ-EALMKTDRRRRRPREEVR 1949
E + ++YWP S LTTRLRRLITAYQR+ K +Q++Q + +P E
Sbjct: 1767 LMEGD----KVYWPTQSALTTRLRRLITAYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEA 1822
Query: 1950 ALEAEREAIISEKRQKWTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDE 2009
L + A I E++Q+WTRREEADFYRVVSTFGV+FDP + QFDW +FRA ARL KK+D+
Sbjct: 1823 TLNPKMAAKI-ERQQRWTRREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDD 1881
Query: 2010 SLEKYFSCFVAMCRRVCRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVL 2069
SLEKY F++MCRRVCR+P K +E D + I+PITEERASRTLYRIELLRK+REQ L
Sbjct: 1882 SLEKYLYAFMSMCRRVCRLPSK--EELVDPNIFIQPITEERASRTLYRIELLRKVREQAL 1939
Query: 2070 HHPQLGERLKLCQPSLDLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHK 2129
HPQL ERLKLC P+ DLP WWECG HDRDLL+GAAKHGVSRTDYHIL DPELSF+ A +
Sbjct: 1940 RHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQR 1999
Query: 2130 NFAQNRGAGNTS------------SLNPL--------AVGFVQTPPVISSAHIQDE---- 2165
N++Q++ A + + S +PL A G + + S ++++E
Sbjct: 2000 NYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKVKSENLKEEPQSS 2059
Query: 2166 -----------------------RVLEQAEGKVE----------------EPENP---AA 2183
VL QA G + EP P +
Sbjct: 2060 EEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAARTEPLTPNPASK 2119
Query: 2184 KEKCEGKEEEEETDGSGKESKQEC------EAEASSVKNELKGVEVGADTGSKSISEKGS 2237
K + + E +D + C + +SS + G + + S S S
Sbjct: 2120 KPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSS 2179
Query: 2238 EEDEEEKLEDDDKSEESSQPEAGAVSRG-----KNFDEESNASMSTARDETRDGFYMEDG 2292
SEES E A R K +DEES AS+ST +DET+D F M +G
Sbjct: 2180 SSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQDETQDSFQMNNG 2239
Query: 2293 DPSVAQLLH-ERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMFDFQGLIPGYTP 2351
P A +L A S+WPKDRVMINRLD+IC+ VLKGKWP RR +D + YT
Sbjct: 2240 TPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRS-YDANTVASFYTT 2298
Query: 2352 TTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIEA 2411
+DSP +++ S+ E+ S Q+SKE L L+ +Q ++R + E
Sbjct: 2299 KLLDSPGAATEYSDPSVPTPPGAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGED 2358
Query: 2412 ERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSSKFILPNVS 2471
+++ L +LRE Q SE +S NF S
Sbjct: 2359 GALGQQQYL----TRLRELQSASE-----------------TSLVNFPK----------S 2387
Query: 2472 TPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVEGLDLLFMSHKR 2531
PVS G S PT NG ++D +P +K+RRGRRKNVEG+D+ F + +
Sbjct: 2388 IPVS------------GTSIQPTLG-ANGVILDNQPIVKKRRGRRKNVEGVDIFFFNRNK 2434
Query: 2532 ----TSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPK 2587
SL ++++ + + IP D ++ +PVINL+DGTRL G+DAPK
Sbjct: 2435 PPNHVSLGLTSSQISTGINPALSYTQPQGIP-----DTESPVPVINLKDGTRLAGDDAPK 2489
Query: 2588 NKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEERV 2647
KDL +WLK HP Y D+ +++P+ + +PKQKRHRCRNPNKLD+N+LTGEERV
Sbjct: 2490 RKDLEKWLKEHPGYVEDLGAFIPR----MQLHEGRPKQKRHRCRNPNKLDVNSLTGEERV 2545
Query: 2648 PVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGP 2707
++N+RN +K+GGA APP+KDL R+L+EN E+ VAP+W D+VKQSGF+PESM++R+LTGP
Sbjct: 2546 QLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGP 2605
Query: 2708 VVRGEGASRRGRRPKSEIARAAAAAAAVASTS-GINPLLVNSLFAGMDLTSL----QNLQ 2762
VVR E SRRGRRPKS IA+A AAAAA ++TS NPLL N L G+DLT+L QNLQ
Sbjct: 2606 VVR-EEVSRRGRRPKSGIAKATAAAAAASATSVSGNPLLANGLLPGVDLTTLQALQQNLQ 2664
Query: 2763 NLQSLQL-AGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPLS 2821
NLQSLQ+ AGLMG P GL +GG+AKN AA+ P++L GMAGLPN+ G+GGLL P
Sbjct: 2665 NLQSLQVTAGLMGMPTGL----PSGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKPTE 2720
Query: 2822 AATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAPA 2881
+ T + + S+ E E T + E + +EN EN +VS++ S + + TA A
Sbjct: 2721 SGTEDKKGSDSK-ESEGKTERTESQSSENGGEN--------SVSSSPSTSSTAALNTAAA 2771
Query: 2882 GLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPA-----LAGLQNAVGSSEE 2936
+NPLA NP LLS + YP M L PGL L +P + + +GSS+
Sbjct: 2772 ---ANPLALNPLLLS----NILYPGMLLTPGL-NLHIPTLSQSNTFDVQNKNSDLGSSKS 2823
Query: 2937 KAADKAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNEN 2995
K E KD E G++ + + + + + + G + S D +NE+
Sbjct: 2824 VEV-KEEDSRIKDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNED 2881
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 2135 bits (5532), Expect = 0.0
Identities = 1181/2168 (54%), Positives = 1435/2168 (66%), Gaps = 221/2168 (10%)
Query: 595 QQKKKKKKNNHIVAED--PSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKD 652
+ +KK++K N IVAE ++ G+ + P ++ EL S+ +E +KK+++ A +
Sbjct: 174 EHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELP--SVRPEEEGEKKRRKKSAGER 231
Query: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKK 712
KE K PK+ KT A K + K+K T P KK
Sbjct: 232 LKEEK-------PKKSKTSGASKT-----KGKSKLNTITPVVGKK--------------- 264
Query: 713 KVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISD-EE 771
+ + S+NSD++ P SP EDE+ +QKRRS+RQVKRK+YTEDL+ KI+D EE
Sbjct: 265 ---RKRNTSSDNSDVEVMPAQSP--REDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEE 319
Query: 772 ADDADAAGRDSPSNTSQSEQQES---------------VDAEGPVVEKIMSSRSVKKQKE 816
++ D G P QE + + +V+K++S R VKK+
Sbjct: 320 EEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELP 379
Query: 817 SGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDEL 876
SG+ E EEF+VKYKN+SYLHC+WA+I LEKDKRI QK+KRFK K Q + ++E
Sbjct: 380 SGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEP 439
Query: 877 FNPDYVEVDRIMDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKL 935
FNPDYVEVDRI+D + S D D GEPV +YLVKWCSLPYEDSTWE ++D+D+ KI EF+++
Sbjct: 440 FNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRI 499
Query: 936 MSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEM 995
SR PE +RV RP A WKK E S EYKN N+LREYQLEGVNWLLFNWYN +NCILADEM
Sbjct: 500 QSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEM 559
Query: 996 GLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRT 1055
GLGKTIQSI FL E+Y GIHGPFLVIAPLSTI NWEREF TWTE+N +VYHGS ASR+
Sbjct: 560 GLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQM 619
Query: 1056 IQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNC 1115
IQ YEMY KD +GR+I G+YKF A+ITTFEMIL+DCPELR I WRCV+IDEAHRLKNRNC
Sbjct: 620 IQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 679
Query: 1116 KLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQV 1175
KLL+ LK MDLEHKVLLTGTPLQNTVEELFSLLHFLEPS+FPSE+ F+++FGDLKTEEQV
Sbjct: 680 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQV 739
Query: 1176 QKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQ 1235
QKLQAILKPMMLRRLKEDVEKNLAPK+ETIIEVELTNIQKKYYRAILEKNF+FLSKG G
Sbjct: 740 QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGH 799
Query: 1236 ANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLI 1295
N+PNLLNTMMELRKCCNHPYLINGAEEKIL EF+E + DF LQAM+++AGKLVLI
Sbjct: 800 TNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLI 859
Query: 1296 DKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKP 1355
DKLLPKLKAGGH+VLIFSQMVRCLDILEDYLIQRRY YERIDGRVRGNLRQAAIDRFSKP
Sbjct: 860 DKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKP 919
Query: 1356 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLI 1415
DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK+VK+YRLI
Sbjct: 920 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 979
Query: 1416 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDE 1475
TRNSYEREMFDKASLKLGLDKAVLQSMSGR+ G+QQ SKKEIEDLLRKGAY A+M+E
Sbjct: 980 TRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEE 1039
Query: 1476 EDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWA 1535
+DEGSKFCEEDIDQILLRRT TITIESEGKGSTFAKASFVAS NRTDISLDDPNFWQKWA
Sbjct: 1040 DDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWA 1099
Query: 1536 KKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQ 1595
KKA+LD+D LN +NNLVIDTPRVRKQTR +S +K+D+L+EFSDLES+ +E+P + R
Sbjct: 1100 KKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRS---RRH 1156
Query: 1596 DKSQGYARSECFRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYCLNHYK 1655
D+ Y R++CFRVEK+LLVYGWGRW DILSHGR+KR++TE+DVETICR ILVYCL HY+
Sbjct: 1157 DRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYR 1216
Query: 1656 GDENIKSFIWDLITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLAS 1715
GDENIK FIWDLI+P +G+T+ L NHSGLS PVPRGRKGKKVK+QST + ADW+
Sbjct: 1217 GDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDI-HKADWIRK 1275
Query: 1716 CNPDALFQEDSYKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEADVWIPE 1775
NPD LFQ++SYKKHLKH CNKVLLRVRMLYYLRQEVIGDQA+K+L GA +SE D+W P
Sbjct: 1276 YNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPV 1335
Query: 1776 PFHAEVPADWWDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRG 1835
EVP WWD EADKSLLIGVFKHGYEKYN+MRADPALCFLE+ G PD KAIAAE R
Sbjct: 1336 VDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRV 1395
Query: 1836 TDMLADGGDGGEFDREDEDPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGKHSESN 1895
D +D +G +FD++ EDPEYKP + P KD+ DE D+E S+ G ++
Sbjct: 1396 LDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISV---IDGDEAQVT 1452
Query: 1896 AELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALMKTDRRRRRPREEVRALEAER 1955
+ G L+WP S LT RLRRL+TAYQRSYKR+QM+ EA + DRRRRR + E R
Sbjct: 1453 QQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIAR 1512
Query: 1956 EAIISEKRQKWTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYF 2015
EK+Q+WTRRE+ DFYRVVSTFGV +DP QF W++FR FARLDKK+DESL KYF
Sbjct: 1513 R----EKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYF 1568
Query: 2016 SCFVAMCRRVCRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHPQLG 2075
FVAMCR+VCR+P DEPPD + IEPITEERASRTLYRIELLR++REQVL HP L
Sbjct: 1569 HGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLE 1628
Query: 2076 ERLKLCQP-SLDLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQN 2134
+RL LCQP +LP+WWE RHD +LL GAA+HGVS+TD +I+ DP+ SFL A N+ QN
Sbjct: 1629 DRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQN 1688
Query: 2135 RGAGNTSSLNPLAVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEE 2194
AG + ++ TP + + A P+ P K E +
Sbjct: 1689 HQAGAPAP----SLSRCSTPL------LHQQYTSRTASPLPLRPDAPVEKSPEETATQVP 1738
Query: 2195 ETDGSGKESKQECEAEASSVKNELKGVEVGADTG---SKSISE-KGSEEDEEEKLEDDDK 2250
+ + + E A + + + +DT S+S+ K +ED+ + D K
Sbjct: 1739 SLESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSK 1798
Query: 2251 SEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFW 2310
SS + + S + DE + D++R Y E+ L T + +
Sbjct: 1799 LSPSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEES-------LLSLTMSQDGF 1851
Query: 2311 PKD--RVMINRLDNICEAVLKGKWPVNR----RQMFDFQGLIPGYTPTTVDSPLQKRSFA 2364
P + M L + E +WP +R R Q ++ G P++ S
Sbjct: 1852 PNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQ------- 1904
Query: 2365 ELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMV 2424
MV + + SP L+ + + VP R
Sbjct: 1905 --EMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPR------------------------ 1938
Query: 2425 AQLRESQVVSENGQEKVVDLSKASREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMEL 2484
S + +E+ +S A+ + F+ L + + D
Sbjct: 1939 -----SSSAASMAEEEASAVSTAAAQ-------FTKLRRGMDEKEFTVQIKD-------- 1978
Query: 2485 LQAGLSRTPTRHLL--NGSLVDGEPPMKRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVT 2542
+ GL T +H L NG + DG P +++G RK + L++ M
Sbjct: 1979 -EEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEE------------- 2024
Query: 2543 KAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYT 2602
P+ +D +TRIPVIN DGT LVGEDAP+ +L WL+ HP +
Sbjct: 2025 ---------------PNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFA 2069
Query: 2603 VDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEERVPVVNKRNGKKMGGAM 2662
VD P ++ D + KQK RC+ NK ++N L G E V N RNGKK
Sbjct: 2070 VD-PRFLAYMED-------RRKQKWQRCKKNNKAELNCL-GMEPVQTANSRNGKK----- 2115
Query: 2663 APPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVVRGEGASRRGRRPK 2722
G E++F+R+L GP+ E + +R RR +
Sbjct: 2116 ------------------------------GHHTETVFNRVLPGPIA-PESSKKRARRMR 2144
Query: 2723 SEIARAAA 2730
++++ A
Sbjct: 2145 PDLSKMMA 2152
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 2026 bits (5250), Expect = 0.0
Identities = 1018/1595 (63%), Positives = 1241/1595 (77%), Gaps = 47/1595 (2%)
Query: 617 KDDFPGGVDNQELNRNSLDGSQE-----EKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTP 671
+D GG ++ + G QE K ++ + K K++PKEPKEP++ KEPK+ K
Sbjct: 83 EDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEH 142
Query: 672 KAPKIP---------------KEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNK 716
K PK KE KEK++ T + S+K+S ++ + KKK K
Sbjct: 143 KEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVE--KKKKGK 200
Query: 717 GKTEGS-ENSDLDK---TPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEA 772
K+E + E+ +LD+ P P E E QKRRS RQVKR++Y EDL+FK+ D++
Sbjct: 201 RKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRKYNEDLDFKVVDDDG 260
Query: 773 DDADAAGRDSPSNTSQS----EQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYV 828
+ G S S S + +E + + ++EKI++S++V++ ++E FYV
Sbjct: 261 ETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYV 320
Query: 829 KYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFL-SEIEDELFNPDYVEVDRI 887
KY+NFSYLHC+WA++E+LEKD RI QKIKRF+ KQ Q K + +E +++LFNPDYVEVDRI
Sbjct: 321 KYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI 380
Query: 888 MDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVE 946
++ A + D + GE VTHYLVKWCSLPYE+STWE +D+D AK++EFE L PE + VE
Sbjct: 381 LEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVE 439
Query: 947 RPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITF 1006
RP +D W+K E SREYKN+N+LREYQLEG+NWLLFNWYN +NCILADEMGLGKTIQSITF
Sbjct: 440 RPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITF 499
Query: 1007 LYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDP 1066
L EI+L+GIHGPFL+IAPLSTI NWEREFRTWTE+N +VYHGSQ SR+ IQ YEM ++D
Sbjct: 500 LSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDA 559
Query: 1067 QGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDL 1126
QG + G +KFH +ITTFEMIL DCPEL+ I W CV+IDEAHRLKNRNCKLLEGLK+M L
Sbjct: 560 QGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMAL 619
Query: 1127 EHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMM 1186
EHKVLLTGTPLQN+VEELFSLL+FLEPS+FPSET F++EFGDLKTEEQV+KLQ+ILKPMM
Sbjct: 620 EHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMM 679
Query: 1187 LRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMM 1246
LRRLK+DVEKNLAPK+ETIIEVELTNIQKKYYRAILEKNF+FL+KG Q N+PNL+NTMM
Sbjct: 680 LRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMM 739
Query: 1247 ELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGG 1306
ELRKCCNHPYLINGAEEKILE+F++TH+ ++PDFQLQAMIQAAGKLVLIDKLLPKL AGG
Sbjct: 740 ELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGG 799
Query: 1307 HRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1366
H+VLIFSQMVRCLDILEDYLIQRRY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCT
Sbjct: 800 HKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCT 859
Query: 1367 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFD 1426
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK+VK+YRLITRNSYEREMFD
Sbjct: 860 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFD 919
Query: 1427 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEED 1486
KASLKLGLDKAVLQ ++ R+ TNGVQQLSK E+EDLLRKGAYGALMDEEDEGSKFCEED
Sbjct: 920 KASLKLGLDKAVLQDIN-RKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEED 978
Query: 1487 IDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALN 1546
IDQIL RRTHTITI+SEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAK AELD +A N
Sbjct: 979 IDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKN 1038
Query: 1547 GRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSEC 1606
+ +LVID PRVRKQT+ Y++ +EDELMEFS+L+SDS+E+P + RR DK++ Y R+EC
Sbjct: 1039 EKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERP-TRSRRLNDKARRYLRAEC 1097
Query: 1607 FRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWD 1666
FRVEKNLL++GWGRW DIL+HGR+K L E+D+E ICR +LVYC+ HYKGDE IKSFIW+
Sbjct: 1098 FRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWE 1157
Query: 1667 LITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDS 1726
LITPT DGQ + L NHSGLSAPVPRGRKGKK K Q P ++DADWLA+CNP+ + +D
Sbjct: 1158 LITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDG 1217
Query: 1727 YKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWW 1786
YKKHLK HCNKVLLRVRMLYYL+ E++G+ A+K EG+ + E DV +P+ + E+P DWW
Sbjct: 1218 YKKHLKQHCNKVLLRVRMLYYLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWW 1277
Query: 1787 DKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGG 1846
D EADKSLLIGVFKHGYE+YN+MRADPALCFLE+VGMPD K+++AEQ TD +D + G
Sbjct: 1278 DAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERG 1337
Query: 1847 EFDREDE-DPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPN 1905
D+ED + + + + D SE K++S + ++ ++ + WP
Sbjct: 1338 NTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDDS-------RAAQDGSDPDKSPWPV 1390
Query: 1906 TSTLTTRLRRLITAYQRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQK 1965
+S LT RLRRL+T YQR +++ R E ++ + +EE+ +E + I E +++
Sbjct: 1391 SSALTARLRRLVTVYQRCNRKELCRPE-ILGPGNQGYWVQEEMFRRTSEMDLINKEAQKR 1449
Query: 1966 WTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRV 2025
WTRRE+ADFYR VS+FGV++D K+ FDW QFR +RLDKKSDESLE+YF FVAMCR V
Sbjct: 1450 WTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNV 1509
Query: 2026 CRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSL 2085
CR+P D PPD + +EPITEERA+RTLYRIELLRK+REQVL PQL ERL+LC+PSL
Sbjct: 1510 CRLPTWKDGGPPDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLQLCRPSL 1569
Query: 2086 DLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNP 2145
LP WWECG+HDRDLL+G AKHG++RTD +I+NDP+LSFLDA++N+AQ++ +G + N
Sbjct: 1570 YLPVWWECGKHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNL 1629
Query: 2146 LAVGFVQTPPVISSAHIQDERVLEQAEGKVEEPEN 2180
+ + S + Q R E E EPEN
Sbjct: 1630 CCLYQTNSKLYESLTYSQMSRTSESLE---NEPEN 1661
Score = 348 bits (892), Expect = 6e-95
Identities = 250/736 (33%), Positives = 371/736 (50%), Gaps = 74/736 (10%)
Query: 2233 SEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDG 2292
SE SE+ + E +D D+ + GK +EES +S S + D E
Sbjct: 2018 SELKSEDMDFENKDDYDRDGNCHSQDYP----GKYSEEESKSSTSGITGDIGDEL-QEAR 2072
Query: 2293 DPSVAQLLHERT-FAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMFDFQGLIPGYTP 2351
P++AQLL E+T ++FS WPKDRV+INRLDNIC VLKGKWP + Q ++ G +P TP
Sbjct: 2073 APTIAQLLQEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSS--QQYEPSGTLP--TP 2128
Query: 2352 TTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIEA 2411
S + S +E A S S + Q+ KE L + ++ RR E E
Sbjct: 2129 VLTSSAGSRTSLSEPE---AAEHSFSNGAALAAQIHKESFLAPVFTKDEQKHRRPYEFEV 2185
Query: 2412 ERAAKRRNLMEMVAQLRESQVVSENGQ-EKVVDLSKASREATSSTSNFSSLSSKFILPNV 2470
ER AK R L + A + ++ E +DLS +S + +TS F +S + +
Sbjct: 2186 ERDAKARGLEQFSATHGHTPIILNGWHGESAMDLSCSSEGSPGATSPFPVSASTPKIGAI 2245
Query: 2471 STPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE-GLDLLFMSH 2529
S+ +LQAGL T ++NGSL + +RRRGRRK+VE G+DL+F+
Sbjct: 2246 SSLQGALGMDLSGILQAGLIHPVTGQIVNGSLRRDDAATRRRRGRRKHVEGGMDLIFL-- 2303
Query: 2530 KRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNK 2589
K +L A EV + + T T + PG P T P ++ E + +K
Sbjct: 2304 KEQTLQAGILEVHE--DPGQATLSTTHPEGPG---PATSAPEPATAASSQ--AEKSIPSK 2356
Query: 2590 DLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEERVPV 2649
L++WL+ Y++++P + +D KPKQ+R RC+ P KLD+++L+GEERVP
Sbjct: 2357 SLLDWLRQQADYSLEVPGFGANFSD-------KPKQRRPRCKEPGKLDVSSLSGEERVPA 2409
Query: 2650 VNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVV 2709
+ K G + GF+PE+ F+ L P++
Sbjct: 2410 IPKEPGLR-----------------------------------GFLPENKFNHTLAEPIL 2434
Query: 2710 RGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNLQNLQSLQL 2769
R G RRGRRP+SE+ +A + A S SG+ PL +N L AGMDL LQN++N+ + L
Sbjct: 2435 RDTGPRRRGRRPRSELLKAPSIVA--DSPSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPL 2492
Query: 2770 AGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPLSAATGNTTT 2829
GL+GFP G AT T G + K+ ++LP+MLPGMA +P +FG+GGLL+ P++ +T
Sbjct: 2493 TGLVGFPAGFATMPT-GEEVKSTLSMLPMMLPGMAAVPQMFGVGGLLSPPMATTCTSTAP 2551
Query: 2830 ASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAPAGLPSNPLA 2889
AS + T+ E+ ED+ + TD ++ G + PA S+P+A
Sbjct: 2552 ASLSSTTKSGTAVTEKTA---EDKPSSHDVKTDTLAEDKPGPGPFSDQSEPAITTSSPVA 2608
Query: 2890 FNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAADKAEG-GPFK 2948
FNPFL+ ++PGL YPSMFL PG+ G+ LP + S+++ K +G P
Sbjct: 2609 FNPFLIPGVSPGLIYPSMFLSPGM-GMALPAMQQARHSEIVGLESQKRKKKKTKGDNPNS 2667
Query: 2949 DGETLEGSDAEESLDK 2964
E + E S D+
Sbjct: 2668 HPEPAPSCEREPSGDE 2683
Score = 34.7 bits (78), Expect = 1.5
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 18/151 (11%)
Query: 2176 EEPENPA-AKEKCEGKEEEE--ETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSI 2232
+EP+ P AKE + KE +E + DG+ K K + K + + A T S+
Sbjct: 125 KEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKA 184
Query: 2233 SEKGSEEDEEEKLEDDDKSE---ESSQPEAGAVSRGKNFDEESNASMSTAR--------- 2280
S++ E+K + KSE ES + + G + EES S + +
Sbjct: 185 SKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKR 244
Query: 2281 ---DETRDGFYMEDGDPSVAQLLHERTFAFS 2308
+E D ++D ++A L RT A S
Sbjct: 245 RKYNEDLDFKVVDDDGETIAVLGAGRTSALS 275
Score = 33.5 bits (75), Expect = 3.2
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 18/156 (11%)
Query: 682 EKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNK--GKTEGSENSDLDKTPPP--SPPP 737
E++A T P+ +S KK+ K G EG+ D+ P P P
Sbjct: 65 EEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREP 124
Query: 738 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAG-------RDSPSNTSQSE 790
+E ++P R++ K K + E + + + +A+G R + ++++
Sbjct: 125 KEPKEP----RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
Query: 791 QQESVDAEGPV-VEKIMSSRSVKKQKESGEEVEIEE 825
+++ +GP VEK + +K + + E +E+++
Sbjct: 181 SRKASKEQGPTPVEK--KKKGKRKSETTVESLELDQ 214
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 545 bits (1404), Expect = e-154
Identities = 368/1086 (33%), Positives = 563/1086 (51%), Gaps = 148/1086 (13%)
Query: 582 KSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEK 641
KS LP +++P KK++ + + E+ +G QE +R ++
Sbjct: 74 KSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRR--SNRSRQEPSRFNIKEEASSG 131
Query: 642 KKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSS--KKSS 699
+ K + + K+ K K+EP E + + EP++KK K P P+ + K
Sbjct: 132 SESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRV 191
Query: 700 NKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRY 759
K+P K +GK + ++SD D ++DE P Q RR R K Y
Sbjct: 192 KKQP---------KTQRGKRKKQDSSDEDD--------DDDEAPKRQTRR--RAAKNVSY 232
Query: 760 TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKK------ 813
ED +F+ ++ + G D + S++ +EK++ SR KK
Sbjct: 233 KEDDDFETDSDDLIEMTGEGVDEQQDNSET------------IEKVLDSRLGKKGATGAS 280
Query: 814 ------------------QKESGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDK-RIQQ 854
+K+ GE ++ +K+K +SY+H W S E L++ K + +
Sbjct: 281 TTVYAIEANGDPSGDFDTEKDEGEI----QYLIKWKGWSYIHSTWESEESLQQQKVKGLK 336
Query: 855 KIKRFKAKQGQNK-FLSEIEDE-------------LFNPDYVEVDRIMDFARSTDDRGEP 900
K++ FK K+ + K +L ++ E N Y V+R++ S G+
Sbjct: 337 KLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQT 396
Query: 901 -------------VTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREP------- 940
YL KW LPY + +WE I + + SR
Sbjct: 397 DFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCIDSFHSRNNSKTIPTR 456
Query: 941 ETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKT 1000
E + +++ P K + + N +LR+YQLEG+NWL +W + ILADEMGLGKT
Sbjct: 457 ECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKT 516
Query: 1001 IQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQL 1058
IQ+I+FL Y + ++GPFL++ PLST+ +W+REF W E+NVVVY G SR TI+
Sbjct: 517 IQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE 576
Query: 1059 YEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLL 1118
YE + KF+A+ITT+E++L D L +I W + +DEAHRLKN + L
Sbjct: 577 YEWIHSQTK------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLY 630
Query: 1119 EGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKL 1178
+ L H++L+TGTPLQN+++EL+SLLHF+ P +F F ++ G + E Q L
Sbjct: 631 KTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGR-ENGYQSL 689
Query: 1179 QAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANV 1238
+L+P +LRR+K+DVEK+L K E I+ VE++ +QK+YY+ IL +N+ L+KG + +
Sbjct: 690 HKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGST 748
Query: 1239 PNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKL 1298
LN +MEL+KCCNH YLI EE E +E L ++I+++GKL+L+DKL
Sbjct: 749 SGFLNIVMELKKCCNHCYLIKPPEENERENGQEI---------LLSLIRSSGKLILLDKL 799
Query: 1299 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSD 1358
L +L+ G+RVLIFSQMVR LDIL +YL + YP++R+DG ++G +R+ A+D F+ S+
Sbjct: 800 LTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE 859
Query: 1359 RFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRN 1418
F FLL TRAGGLGINL +ADT +IFDSDWNPQNDLQAQAR HRIGQ K V IYRL+T+
Sbjct: 860 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 919
Query: 1419 SYEREMFDKASLKLGLDKAVLQSM-----------SGRENATNGVQQLSKKEIEDLLRKG 1467
+ E E+ ++A K+ LD V+Q M SGR N+ +K+E+ +L+ G
Sbjct: 920 TVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNS----NPFNKEELTAILKFG 975
Query: 1468 AYGALMDEEDEGSKFCEEDIDQIL----LRRTHTITIESEGKGSTFAKASFVASGNRTDI 1523
A + E E S+ E DID+IL R T ++ S F A+F + ++
Sbjct: 976 AEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEEL 1035
Query: 1524 SLDDPNFWQK---WAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLE 1580
W + ++ +++ + + PR+R T+ + +D +
Sbjct: 1036 EERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTK---------KAQTNDSD 1086
Query: 1581 SDSEEK 1586
SD+E K
Sbjct: 1087 SDTESK 1092
Score = 45.8 bits (107), Expect = 6e-04
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 22/150 (14%)
Query: 631 RNSLDGSQEEKKKKKRSKAKKDPKEPK----------EPKEKKEPKEP---KTPKAPKIP 677
+ ++ G +E K KK++ + KK+ K P+ P+ P E K K P
Sbjct: 1328 KGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSP 1387
Query: 678 KEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDK-------- 729
+ K+KK + K K +K+ D E K K K K+ +++S K
Sbjct: 1388 MKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHI 1447
Query: 730 TPPPSPPP-EEDEDPGVQKRRSSRQVKRKR 758
T P P EDED + + S +R R
Sbjct: 1448 TAGSEPVPIGEDEDDDLDQETFSICKERMR 1477
Score = 39.3 bits (90), Expect = 0.059
Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 558 PSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKK----------------KKK 601
P +K +P T QL DYL + ++ +KK + K
Sbjct: 1288 PELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVK 1347
Query: 602 KNNHIVAEDPSKGFGKDDFPGGVDNQ----ELNRNSLDGSQEEKKKKKRSKAKKDPKEPK 657
K N + G P DN E+ + L+ S +KK+KK KE K
Sbjct: 1348 KENKVPRLKEEHGIELSS-PRHSDNPSEEGEVKDDGLEKSPMKKKQKK--------KENK 1398
Query: 658 EPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKG 717
E KE K+ K + K K+ K+KK K + KSS KS + +A + V G
Sbjct: 1399 ENKE-KQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIG 1457
Query: 718 KTEGSENSDLDK 729
+ E+ DLD+
Sbjct: 1458 E---DEDDDLDQ 1466
Score = 35.8 bits (81), Expect = 0.65
Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 17/211 (8%)
Query: 656 PKEPKEKKEPKEPKTPK--APKIPKEPKEKK-AKTATPKPKSSKKSSNKKPDSEASALKK 712
P E +K + K+ +T K+ ++ EKK A T + K K+ K +++ LK+
Sbjct: 1298 PVETDKKPQGKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKE 1357
Query: 713 KVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKIS---D 769
+ G E S + PS E +D G++K ++ K+K E+ E ++S D
Sbjct: 1358 E------HGIELSSPRHSDNPSEEGEVKDD-GLEKSPMKKKQKKKENKENKEKQMSSRKD 1410
Query: 770 EEADDADAAGRD---SPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEF 826
+E D +D P + +S ++GP V S V ++ ++++ E F
Sbjct: 1411 KEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGP-VHITAGSEPVPIGEDEDDDLDQETF 1469
Query: 827 YVKYKNFSYLHCQWASIEDLEKDKRIQQKIK 857
+ + + ++ +K +Q++++
Sbjct: 1470 SICKERMRPVKKALKQLDKPDKGLNVQEQLE 1500
Score = 35.4 bits (80), Expect = 0.86
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 1786 WDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERV 1821
W E D LL+G+++HGY + ++ DP L +++
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKI 1296
Score = 33.5 bits (75), Expect = 3.2
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 2190 KEEEEETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSISEKGSEEDEEEKLEDDD 2249
K +EE++ S EAS G+D+GS+S SE+GS+ E +
Sbjct: 7 KSQEEDSSLHSNASSHSASEEAS-----------GSDSGSQSESEQGSDPGSGHGSESNS 55
Query: 2250 KSEES-SQPEAGAVSRG 2265
SE S SQ E+ + S G
Sbjct: 56 SSESSESQSESESESAG 72
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 531 bits (1369), Expect = e-150
Identities = 337/848 (39%), Positives = 469/848 (55%), Gaps = 114/848 (13%)
Query: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQ--------------------QKIKRFKAKQG 864
+F+VK++ SY HC W S LE ++ + K K K
Sbjct: 542 QFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNK 601
Query: 865 QNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWER 920
KF +E+E+ + P+++ + RI++ S D +G HYL+KW LPY+ ++WE
Sbjct: 602 DPKF-AEMEERFYRYGIKPEWMMIHRILN--HSVDKKGH--VHYLIKWRDLPYDQASWES 656
Query: 921 R----QDIDQAKIEEFE--KLMSREP----------ETERVERPP----ADDWKKSESSR 960
QD D K + +LM E + ++ERPP D K E
Sbjct: 657 EDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQP 716
Query: 961 EYKN--NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKG-IHG 1017
EY + L YQ+EG+NWL F+W + ILADEMGLGKT+Q+ FLY +Y +G G
Sbjct: 717 EYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKG 776
Query: 1018 PFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIK---- 1072
PFLV APLSTI NWEREF W ++ VV Y G + SR I+ E F+D R K
Sbjct: 777 PFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASR 836
Query: 1073 ----GSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEH 1128
S KFH ++T++E+I D L +I W C+++DEAHRLKN K L L+H
Sbjct: 837 MKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQH 896
Query: 1129 KVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLR 1188
K+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +L P MLR
Sbjct: 897 KLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLR 956
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMEL 1248
RLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N +LLN +M+L
Sbjct: 957 RLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGG-GNQVSLLNVVMDL 1015
Query: 1249 RKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHR 1308
+KCCNHPYL A E + + A+I+A+GKL+L+ K+L LK GGHR
Sbjct: 1016 KKCCNHPYLFPVAA-------MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHR 1068
Query: 1309 VLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRA 1368
VLIFSQM + LD+LED+L Y YERIDG + GN+RQ AIDRF+ P + +F FLL TRA
Sbjct: 1069 VLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRA 1128
Query: 1369 GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKA 1428
GGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V IYR +TR S E + A
Sbjct: 1129 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVA 1188
Query: 1429 SLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDID 1488
K+ L V++ G + + +SK+E++D+L+ G DE +G +E D
Sbjct: 1189 KKKMMLTHLVVRPGLGSKTGS-----MSKQELDDILKFGTEELFKDEATDGGGDNKEGED 1243
Query: 1489 -----------QILLRRTHTITIESEGKG-----STFAKASFVA----SGNRTDISLD-- 1526
+ LL R T ++E +G S+F A +V G ++ +
Sbjct: 1244 SSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII 1303
Query: 1527 ------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKEDELMEF 1576
DP++W+K + + + D+ G+ R+RKQ +ED ++
Sbjct: 1304 KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RIRKQVNYNDGSQEDR--DW 1355
Query: 1577 SDLESDSE 1584
D +SD++
Sbjct: 1356 QDDQSDNQ 1363
Score = 48.1 bits (113), Expect = 1e-04
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 635 DGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKE---------PKTPKAPKIPKEPKEKKA 685
D S+ E K K+ K K P++PK PK K++ KE + + P+ +E +E
Sbjct: 42 DLSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVAL 101
Query: 686 KTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV 745
++ + + S + KK + K+K +K K + E EED+D
Sbjct: 102 RSDS---EGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEE-------------EEDDDDDS 145
Query: 746 QKRRSSRQVKRKRYTEDLEFKISDEE 771
++ +SS Q+ ED++ S+E+
Sbjct: 146 KEPKSSAQLLEDWGMEDIDHVFSEED 171
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 526 bits (1354), Expect = e-148
Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)
Query: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863
EF+VK+ SY HC WA LE + + + K ++
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919
++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE
Sbjct: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 664
Query: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954
D+ I E+E+ +M +P R + P D
Sbjct: 665 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
Query: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012
K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y
Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
Query: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070
+G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D
Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 837
Query: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119
IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K
Sbjct: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
Query: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179
L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL
Sbjct: 898 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 957
Query: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239
+L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N
Sbjct: 958 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1016
Query: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299
+LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L
Sbjct: 1017 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1069
Query: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359
KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1070 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1129
Query: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419
F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S
Sbjct: 1130 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1189
Query: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479
E + A K+ L V++ G + + +SK+E++D+L+ G DE +
Sbjct: 1190 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1244
Query: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525
+K EED I LL R T +++ + S+F A +V +
Sbjct: 1245 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1302
Query: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
+ DP++W+K + + + D+ G+ RVRKQ A +ED
Sbjct: 1303 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1356
Query: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599
+ + S+ SEE+ RP+ + Q
Sbjct: 1357 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1383
Score = 39.7 bits (91), Expect = 0.045
Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 17/210 (8%)
Query: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703
K+ S+A K E P T K P P P EK TP K ++ +KP
Sbjct: 1526 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1583
Query: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV----QKRRSSRQVKRKRY 759
+ S + +K+ S L + P P EDE PGV + R + K
Sbjct: 1584 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642
Query: 760 TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAE-----GPVVEKIMSSRSVKKQ 814
TE + +E+ D T ++E V + GP E RS ++
Sbjct: 1643 TESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDE----PRSNGRR 1698
Query: 815 KESGEEVEIEEFYVKYKNFSYLHCQWASIE 844
+E E+ F + F+ LH W + E
Sbjct: 1699 EEKTEKPRF-MFNIADGGFTELHTLWQNEE 1727
Score = 32.7 bits (73), Expect = 5.5
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711
P + KE K P + K+P++P K+ + K P K K +K + +
Sbjct: 254 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 310
Query: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771
+ ++G +E SDLD S D +K + R ++K+ +EE
Sbjct: 311 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 370
Query: 772 ADDADAAGRD 781
D + +D
Sbjct: 371 VDGYETDHQD 380
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 526 bits (1354), Expect = e-148
Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)
Query: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863
EF+VK+ SY HC WA LE + + + K ++
Sbjct: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
Query: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919
++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE
Sbjct: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 664
Query: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954
D+ I E+E+ +M +P R + P D
Sbjct: 665 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
Query: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012
K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y
Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
Query: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070
+G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D
Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 837
Query: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119
IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K
Sbjct: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
Query: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179
L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL
Sbjct: 898 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 957
Query: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239
+L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N
Sbjct: 958 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1016
Query: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299
+LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L
Sbjct: 1017 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1069
Query: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359
KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1070 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1129
Query: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419
F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S
Sbjct: 1130 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1189
Query: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479
E + A K+ L V++ G + + +SK+E++D+L+ G DE +
Sbjct: 1190 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1244
Query: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525
+K EED I LL R T +++ + S+F A +V +
Sbjct: 1245 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1302
Query: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
+ DP++W+K + + + D+ G+ RVRKQ A +ED
Sbjct: 1303 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1356
Query: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599
+ + S+ SEE+ RP+ + Q
Sbjct: 1357 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1383
Score = 37.0 bits (84), Expect = 0.29
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703
K+ S+A K E P T K P P P EK TP K ++ +KP
Sbjct: 1526 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1583
Query: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDL 763
+ S + +K+ S L + P P EDE PGV Y D
Sbjct: 1584 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGV----PGEMEPEPGYRGDR 1638
Query: 764 EFKISDEEADDADAAG-RDSPSNTSQSEQQ 792
E K D + D G RD P + + E++
Sbjct: 1639 E-KSEDVKGDRELRPGPRDEPRSNGRREEK 1667
Score = 32.7 bits (73), Expect = 5.5
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711
P + KE K P + K+P++P K+ + K P K K +K + +
Sbjct: 254 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 310
Query: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771
+ ++G +E SDLD S D +K + R ++K+ +EE
Sbjct: 311 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 370
Query: 772 ADDADAAGRD 781
D + +D
Sbjct: 371 VDGYETDHQD 380
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 526 bits (1354), Expect = e-148
Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)
Query: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863
EF+VK+ SY HC WA LE + + + K ++
Sbjct: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
Query: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919
++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE
Sbjct: 668 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 723
Query: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954
D+ I E+E+ +M +P R + P D
Sbjct: 724 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 779
Query: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012
K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y
Sbjct: 780 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 839
Query: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070
+G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D
Sbjct: 840 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 896
Query: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119
IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K
Sbjct: 897 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 956
Query: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179
L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL
Sbjct: 957 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 1016
Query: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239
+L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N
Sbjct: 1017 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1075
Query: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299
+LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L
Sbjct: 1076 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1128
Query: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359
KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1129 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1188
Query: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419
F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S
Sbjct: 1189 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1248
Query: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479
E + A K+ L V++ G + + +SK+E++D+L+ G DE +
Sbjct: 1249 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1303
Query: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525
+K EED I LL R T +++ + S+F A +V +
Sbjct: 1304 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1361
Query: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
+ DP++W+K + + + D+ G+ RVRKQ A +ED
Sbjct: 1362 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1415
Query: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599
+ + S+ SEE+ RP+ + Q
Sbjct: 1416 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1442
Score = 39.7 bits (91), Expect = 0.045
Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 17/210 (8%)
Query: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703
K+ S+A K E P T K P P P EK TP K ++ +KP
Sbjct: 1585 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1642
Query: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV----QKRRSSRQVKRKRY 759
+ S + +K+ S L + P P EDE PGV + R + K
Sbjct: 1643 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1701
Query: 760 TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAE-----GPVVEKIMSSRSVKKQ 814
TE + +E+ D T ++E V + GP E RS ++
Sbjct: 1702 TESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDE----PRSNGRR 1757
Query: 815 KESGEEVEIEEFYVKYKNFSYLHCQWASIE 844
+E E+ F + F+ LH W + E
Sbjct: 1758 EEKTEKPRF-MFNIADGGFTELHTLWQNEE 1786
Score = 33.5 bits (75), Expect = 3.2
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKK 712
P P P P P P I P K PK K++ KP +K
Sbjct: 74 PPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRK-----RK 128
Query: 713 KVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKR 758
K + + GSE + + S E PG ++RR R+ K K+
Sbjct: 129 KRDSEEEFGSERDEY-REKSESGGSEYGTGPGRKRRRKHREKKEKK 173
Score = 32.7 bits (73), Expect = 5.5
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711
P + KE K P + K+P++P K+ + K P K K +K + +
Sbjct: 313 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 369
Query: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771
+ ++G +E SDLD S D +K + R ++K+ +EE
Sbjct: 370 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 429
Query: 772 ADDADAAGRD 781
D + +D
Sbjct: 430 VDGYETDHQD 439
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 518 bits (1333), Expect = e-146
Identities = 383/1129 (33%), Positives = 572/1129 (50%), Gaps = 160/1129 (14%)
Query: 574 SGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNS 633
S P+ V+ L +QQ QQ++ + +N ED S DD
Sbjct: 89 SSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDD-------------- 134
Query: 634 LDGSQEEKKKKKRSK-----AKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTA 688
S E K+KK + + P + E +E +E + + EPK K
Sbjct: 135 --SSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNK---VK 189
Query: 689 TPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKR 748
+ KP++ KS N K K G + +D S +++ED KR
Sbjct: 190 SRKPQNRSKSKNGK---------------KILGQKKRQIDS----SEEDDDEEDYDNDKR 230
Query: 749 RSSRQVK-RKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMS 807
S RQ Y ED E K + D + G D P Q E++E +E+ M
Sbjct: 231 SSRRQATVNVSYKEDEEMKTDSD--DLLEVCGEDVP----QPEEEEF-----ETIERFMD 279
Query: 808 SR------------------------SVKKQKESGEEVEIEEFYVKYKNFSYLHCQWASI 843
R +K KE GE ++ +K+K +S++H W +
Sbjct: 280 CRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEI----QYLIKWKGWSHIHNTWETE 335
Query: 844 EDLEKDK-RIQQKIKRFKAKQGQNK---------------FLSEIEDELFNPDYVEVDRI 887
E L++ R +K+ +K K + K E+ D+L + Y V+RI
Sbjct: 336 ETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDL-HKQYQIVERI 394
Query: 888 MDFARSTDDRGEPVTHYLVKWCSLPYEDSTWERRQDID---QAKIEE-FEKLMSREPETE 943
+ + G P Y KW LPY + +WE I QA I+E F + S+ +
Sbjct: 395 IAHSNQKSAAGYP--DYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFK 452
Query: 944 RV----ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGK 999
+RP KK S +LR+YQL G+NWL +W +CILADEMGLGK
Sbjct: 453 DCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGK 512
Query: 1000 TIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTW-TELNVVVYHGSQASRRTIQ 1057
TIQ+I+FL Y + ++GPFL++ PLST+ +W+RE +TW +++N VVY G SR I+
Sbjct: 513 TIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIR 572
Query: 1058 LYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKL 1117
+E + KF+ ++TT+E++L D L + W + +DEAHRLKN + L
Sbjct: 573 THEWTHHQTK------RLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLL 626
Query: 1118 LEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQK 1177
+ L H++L+TGTPLQN+++EL+SLLHF+ P +F S F +E G + E
Sbjct: 627 YKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGR-EYGYAS 685
Query: 1178 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQAN 1237
L L+P +LRR+K+DVEK+L K E I+ +E++ +QK+YY+ IL +N+ LSKG + +
Sbjct: 686 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGS-KGS 744
Query: 1238 VPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDK 1297
LN MMEL+KCCNH YLI + EF A LQ +I+++GKL+L+DK
Sbjct: 745 TSGFLNIMMELKKCCNHCYLIKPPDNN---EFYNKQEA------LQHLIRSSGKLILLDK 795
Query: 1298 LLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDS 1357
LL +L+ G+RVLIFSQMVR LDIL +YL R++P++R+DG ++G LR+ A+D F+ S
Sbjct: 796 LLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGS 855
Query: 1358 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1417
+ F FLL TRAGGLGINL +ADT +IFDSDWNPQNDLQAQAR HRIGQ K V IYRL+T+
Sbjct: 856 EDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTK 915
Query: 1418 NSYEREMFDKASLKLGLDKAVLQSM--SGRE-----NATNGVQQLSKKEIEDLLRKGAYG 1470
S E ++ ++A K+ LD V+Q M +G+ +A + +K+E+ +L+ GA
Sbjct: 916 GSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEE 975
Query: 1471 ALMDEEDEGSKFCEEDIDQILLR-RTH-----TITIESEGKGSTFAKASFVASGNRTDIS 1524
+ E E + E DID+IL R TH +T+ E S F A+F ++ + DI
Sbjct: 976 LFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDE-LLSQFKVANF-SNMDEDDIE 1033
Query: 1525 LDDPNFWQKWA------KKAELDIDALNGRNNLVIDTPRVRKQTRLY----SAVKEDELM 1574
L+ + W ++ L+ + + PR+R + S +
Sbjct: 1034 LEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSR 1093
Query: 1575 EFSDLESDS-----EEKPCAKPRR-PQDKSQGYARSECFRVEKNLLVYG 1617
+S +SDS K +PR P++ +G++ +E R K+ +G
Sbjct: 1094 RYSGSDSDSISEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG 1142
Score = 38.1 bits (87), Expect = 0.13
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1786 WDKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPD 1825
W KE D +LLIG++++GY + ++ DP L ++ +PD
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKI-LPD 1291
Score = 33.5 bits (75), Expect = 3.2
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 41/231 (17%)
Query: 577 NAQLVKS--DDYLP---SIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNR 631
NA+LV S ++ +P SI P+++K+ H A +GK+D +
Sbjct: 1210 NAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKED----------DS 1259
Query: 632 NSLDGSQE------EKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKA 685
N L G E E K + P +P +K + K+ +T I ++
Sbjct: 1260 NLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAK 1319
Query: 686 KTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV 745
K A SSK+ +A A K K K + E D +P PS +ED+D
Sbjct: 1320 KEALSGAGSSKRR-------KARAKKNKAMKS-IKVKEEIKSDSSPLPSEKSDEDDDKLS 1371
Query: 746 QKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVD 796
+ + R+ +K D I+ A+G P SE+ E +D
Sbjct: 1372 ESKSDGRERSKKSSVSDAPVHIT--------ASGEPVPI----SEESEELD 1410
Score = 33.1 bits (74), Expect = 4.2
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 2176 EEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSISEK 2235
EE ++ E + ++ GSG S ++ SS ++ + G+++GS+S SE
Sbjct: 7 EESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESE- 65
Query: 2236 GSEEDEEEKLED-----DDKSEESSQPEAGAVSRG--------KNFDEESNASMSTARDE 2282
S+ E K++ D S P AV R + ++ AS ++ +E
Sbjct: 66 -SDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEE 124
Query: 2283 TRDGFYMEDGDPSVAQLLHER 2303
D ED D S +++ ++
Sbjct: 125 --DSSSSEDSDDSSSEVKRKK 143
Score = 32.7 bits (73), Expect = 5.5
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 2162 IQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKGV 2221
+Q +L++ + + ++ ++ A+ G EE+ S ++ + +S VK +
Sbjct: 96 VQRSAILKKQQQQQQQQQHQASSNS--GSEEDSS-------SSEDSDDSSSEVKRKKHKD 146
Query: 2222 EVGADTGSKSISEKGSEEDEEEKLEDD--DKSEESSQPEAGAVSR 2264
E +GS S S+ GS+ + EE+ E D++E +P+ SR
Sbjct: 147 EDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSR 191
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 503 bits (1295), Expect = e-141
Identities = 296/725 (40%), Positives = 414/725 (57%), Gaps = 92/725 (12%)
Query: 819 EEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK------------------ 860
E + EF+VK+ SY HC W LE + + + K
Sbjct: 504 EGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDG 563
Query: 861 ---AKQGQNKFLSEIEDELF----NPDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPY 913
++ ++ +++E+ + P+++ + RI++ S D +G+ HYL+KW LPY
Sbjct: 564 KSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILN--HSFDKKGD--VHYLIKWKDLPY 619
Query: 914 EDSTWERRQDIDQAKIEEFEKL------------------------MSREPETERVERPP 949
+ TWE ID I ++ L ++ ++ E+PP
Sbjct: 620 DQCTWE----IDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPP 675
Query: 950 ----ADDWKKSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQS 1003
D K + Y L YQLEG+NWL F+W + ILADEMGLGKT+Q+
Sbjct: 676 DTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT 735
Query: 1004 ITFLYEIYLKG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEM 1061
I FLY +Y +G GP+LV APLSTI NWEREF W + VV Y G + SR I+ E
Sbjct: 736 IVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEF 795
Query: 1062 YFKDPQGRVIKGSY--------KFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNR 1113
F+D R K + KFH ++T++E+I D L +I W C+V+DEAHRLKN
Sbjct: 796 SFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNN 855
Query: 1114 NCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEE 1173
K L +++K+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+
Sbjct: 856 QSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKED 915
Query: 1174 QVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFL-SKG 1232
Q++KL +L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L SKG
Sbjct: 916 QIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKG 975
Query: 1233 GGQANVPNLLNTMMELRKCCNHPYL--INGAEEKILEEFKETHNAESPDFQLQAMIQAAG 1290
GG N +LLN MM+L+KCCNHPYL + E +L + + ++++++G
Sbjct: 976 GG--NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVL---------PNGSYDGSSLVKSSG 1024
Query: 1291 KLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAID 1350
KL+L+ K+L KL+ GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AID
Sbjct: 1025 KLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1084
Query: 1351 RFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK 1410
RF+ P + +F FLL TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V
Sbjct: 1085 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1144
Query: 1411 IYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
IYR +TR S E + A K+ L V++ G ++ + ++K+E++D+L+ G
Sbjct: 1145 IYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGS-----MTKQELDDILKFGTEE 1199
Query: 1471 ALMDE 1475
D+
Sbjct: 1200 LFKDD 1204
Score = 43.9 bits (102), Expect = 0.002
Identities = 76/312 (24%), Positives = 119/312 (38%), Gaps = 78/312 (25%)
Query: 584 DDYLPSIE--QQPQQKKKKK-KNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGS--Q 638
DD+ P +E P++KK KK K N + K D+ ++ E ++ +GS
Sbjct: 37 DDFFP-VEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLE-EKSESEGSDYS 94
Query: 639 EEKKKKKRSKAKKDPKEPKEPKEKKEP-------KEPKTPK------------------- 672
KKKKK+ K KK+ K ++ K++ E KEPK+
Sbjct: 95 PNKKKKKKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEED 154
Query: 673 ------------------APKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKV 714
A K PK P K K + ++N S A+A V
Sbjct: 155 YHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF-SANNPFKGSSAAAAAAAV 213
Query: 715 NKGKTEGSENSDLDKTPPPSPPP--------EEDEDPGVQKR-RSSRQVKRK---RYTED 762
+ + L +PP P P +E + PGV+K+ + S+ K+K + T
Sbjct: 214 AAAVETVTISPPLAVSPPQVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAG 273
Query: 763 LEFKI----------SDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVK 812
L+F+ S E D+ + + DS S S S + E A G K R K
Sbjct: 274 LKFRFGGISNKRKKGSSSEEDEREESDFDSASIHSASVRSECSAALG----KKSKRRRKK 329
Query: 813 KQKESGEEVEIE 824
K+ + G+ E +
Sbjct: 330 KRIDDGDGYETD 341
Score = 33.5 bits (75), Expect = 3.2
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 24/162 (14%)
Query: 636 GSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAP-KIPKEPKEKKAKTATPKPKS 694
G++EE + + + + + +E E + P P +PK+ K KK K K K
Sbjct: 6 GTEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKR 65
Query: 695 SKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQV 754
KK + SE + K ++EGS+ S P +K++ +
Sbjct: 66 KKKEGSNDELSENE--EDLEEKSESEGSDYS-----------------PNKKKKKKLKDK 106
Query: 755 KRKRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVD 796
K K+ K DE+ DD D P ++ Q + +D
Sbjct: 107 KEKKAKR----KKKDEDEDDNDDGCLKEPKSSGQLMAEWGLD 144
Score = 32.0 bits (71), Expect = 9.5
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 591 EQQPQQKKKKKKNNHIVAEDPSKGFGK-DDF----PGGVDNQELNRNSLDGSQEEKKKKK 645
E+ P+ ++ +N ++E+ G DDF P + ++ + + + K+KKK
Sbjct: 9 EELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKK 68
Query: 646 RSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDS 705
+ + ++ +EK E + K K+ K+KK K A KK + D+
Sbjct: 69 EGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKA-----KRKKKDEDEDDN 123
Query: 706 EASALKKKVNKGK 718
+ LK+ + G+
Sbjct: 124 DDGCLKEPKSSGQ 136
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 404 bits (1038), Expect = e-112
Identities = 238/569 (41%), Positives = 340/569 (59%), Gaps = 42/569 (7%)
Query: 930 EEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNC 989
EE E+L+S +T V + E S Y LR+YQ+ G+NWL+ + N N
Sbjct: 152 EEDEELLSESRKTSNV-------CIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNG 204
Query: 990 ILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYH 1047
ILADEMGLGKT+Q+I L Y + + I GP +V+ P ST+ NW EF+ W L V+ +
Sbjct: 205 ILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFV 264
Query: 1048 GSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEA 1107
G + +R EM ++ +T++EM++ + + WR +VIDEA
Sbjct: 265 GDKDARAAFIRDEMM-----------PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
Query: 1108 HRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG 1167
HR+KN KL E ++ +++LLTGTPLQN + EL++LL+FL P F S F F
Sbjct: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
Query: 1168 D---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K
Sbjct: 374 TKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK 433
Query: 1225 NFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQA 1284
+ L+ G + LLN +M+LRKCCNHPYL +GAE P +
Sbjct: 434 DIDVLNSSGKMDKM-RLLNILMQLRKCCNHPYLFDGAEPG------------PPYTTDEH 480
Query: 1285 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1344
++ +GK+V++DKLL KLK G RVLIFSQM R LDILEDY + R Y Y R+DG+
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 1345 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1404
R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRIG
Sbjct: 541 REEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 600
Query: 1405 QSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLL 1464
Q K V+++RLIT N+ E + ++A +KL LD V+Q + +N +L+K+E+ ++
Sbjct: 601 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN---KLAKEEMLQMI 657
Query: 1465 RKGAYGALMDEEDEGSKFCEEDIDQILLR 1493
R GA +E S+ +EDI IL R
Sbjct: 658 RHGATHVFASKE---SELTDEDITTILER 683
Score = 32.0 bits (71), Expect = 9.5
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)
Query: 660 KEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK------------PKSSKKSSNKKPDSEA 707
+E EPK PKAP+ PK+P + + P+ K+ + PD
Sbjct: 752 REALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPN 811
Query: 708 SALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKI 767
AL ++ + K +G+E P P E +E + + + KR D I
Sbjct: 812 PALAQREEQKKIDGAE---------PLTPEETEEKEKLLTQGFTNWTKR-----DFNQFI 857
Query: 768 SDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFY 827
E GRD N ++ + EG E++M +V ++ E +IE+
Sbjct: 858 KANE-----KYGRDDIDNIAR-------EVEGKSPEEVMEYSAVFWER-CNELQDIEKIM 904
Query: 828 VKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKA 861
+ + + SI+ K + KI R+KA
Sbjct: 905 AQIERGEARIQRRISIK-----KALDAKIARYKA 933
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 401 bits (1030), Expect = e-111
Identities = 239/570 (41%), Positives = 343/570 (60%), Gaps = 44/570 (7%)
Query: 930 EEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNC 989
EE E+L++ + V + E S Y KLR+YQ+ G+NWL+ + N N
Sbjct: 149 EEDEELLTESSKATNV-------CTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGING 201
Query: 990 ILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVYH 1047
ILADEMGLGKT+Q+I+ L Y + + I GP +V+ P ST+ NW EF+ W L V
Sbjct: 202 ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLI 261
Query: 1048 GSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEA 1107
G + R + +D ++ G + +T++EM++ + + WR +VIDEA
Sbjct: 262 GDKEQRAA------FVRDV---LLPGEWD--VCVTSYEMLIKEKSVFKKFNWRYLVIDEA 310
Query: 1108 HRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG 1167
HR+KN KL E ++ +++LLTGTPLQN + EL+SLL+FL P F S F F
Sbjct: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
Query: 1168 D---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
L ++ V++L +L+P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL K
Sbjct: 371 TNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK 430
Query: 1225 NFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQA 1284
+ L+ G + LLN +M+LRKCCNHPYL +GAE P +
Sbjct: 431 DIDILNSAGKMDKM-RLLNILMQLRKCCNHPYLFDGAEP-------------GPPYTTDM 476
Query: 1285 -MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGN 1343
++ +GK+V++DKLLPKLK G RVLIFSQM R LDILEDY + R Y Y R+DG+ +
Sbjct: 477 HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 1344 LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 1403
RQ +I+ +++P+S +FVF+L TRAGGLGINL AD I++DSDWNPQ DLQA R HRI
Sbjct: 537 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 1404 GQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1463
GQ+K+V+++R IT N+ E + ++A +KL LD V+Q GR N + ++ K E+ +
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ--QGRLVDQN-LNKIGKDEMLQM 653
Query: 1464 LRKGAYGALMDEEDEGSKFCEEDIDQILLR 1493
+R GA +E S+ +EDID IL R
Sbjct: 654 IRHGATHVFASKE---SEITDEDIDGILER 680
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 395 bits (1015), Expect = e-109
Identities = 238/581 (40%), Positives = 340/581 (58%), Gaps = 54/581 (9%)
Query: 930 EEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNC 989
EE E+L+S +T V + E S Y LR+YQ+ G+NWL+ + N N
Sbjct: 152 EEDEELLSESRKTSNV-------CIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNG 204
Query: 990 ILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYH 1047
ILADEMGLGKT+Q+I L Y + + I GP +V+ P ST+ NW EF+ W L V+ +
Sbjct: 205 ILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFV 264
Query: 1048 GSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEA 1107
G + +R EM ++ +T++EM++ + + WR +VIDEA
Sbjct: 265 GDKDARAAFIRDEMM-----------PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
Query: 1108 HRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG 1167
HR+KN KL E ++ +++LLTGTPLQN + EL++LL+FL P F S F F
Sbjct: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
Query: 1168 D---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K
Sbjct: 374 TKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK 433
Query: 1225 NFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQA 1284
+ L+ G + LLN +M+LRKCCNHPYL +GAE P +
Sbjct: 434 DIDVLNSSGKMDKM-RLLNILMQLRKCCNHPYLFDGAEPG------------PPYTTDEH 480
Query: 1285 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1344
++ +GK+V++DKLL KLK G RVLIFSQM R LDILEDY + R Y Y R+DG+
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 1345 RQ------------AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1392
R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ
Sbjct: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
Query: 1393 DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGV 1452
DLQA R HRIGQ K V+++RLIT N+ E + ++A +KL LD V+Q + +N
Sbjct: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN-- 658
Query: 1453 QQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLR 1493
+L+K+E+ ++R GA +E S+ +EDI IL R
Sbjct: 659 -KLAKEEMLQMIRHGATHVFASKE---SELTDEDITTILER 695
Score = 32.0 bits (71), Expect = 9.5
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)
Query: 660 KEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK------------PKSSKKSSNKKPDSEA 707
+E EPK PKAP+ PK+P + + P+ K+ + PD
Sbjct: 764 REALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPN 823
Query: 708 SALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKI 767
AL ++ + K +G+E P P E +E + + + KR D I
Sbjct: 824 PALAQREEQKKIDGAE---------PLTPEETEEKEKLLTQGFTNWTKR-----DFNQFI 869
Query: 768 SDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFY 827
E GRD N ++ + EG E++M +V ++ E +IE+
Sbjct: 870 KANE-----KYGRDDIDNIAR-------EVEGKSPEEVMEYSAVFWER-CNELQDIEKIM 916
Query: 828 VKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKA 861
+ + + SI+ K + KI R+KA
Sbjct: 917 AQIERGEARIQRRISIK-----KALDAKIARYKA 945
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 390 bits (1003), Expect = e-108
Identities = 359/1269 (28%), Positives = 559/1269 (44%), Gaps = 228/1269 (17%)
Query: 362 MHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPP------PMSPMKAMS--------NPAG 407
MHQ G ++ + +H +GT PP P SPM S +P G
Sbjct: 70 MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
Query: 408 TPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPG-AMGIGQRNMGPRNMQQSRPFIGMSS 466
P P S G P P MP QP PG + Q N GP PF +
Sbjct: 130 APEHVSSPMSGGGPTP----PQMPPSQPGALIPGDPQAMSQPNRGPS------PFSPVQL 179
Query: 467 APRELTGHMRPNGCPGVGLGDPQAIQ-----ERLIPG--QQHPGQQPSFQQLPTCPPLQP 519
+L + G P+ +Q +R +PG QQ QQ QQ Q
Sbjct: 180 --HQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
Query: 520 HPGLHHQSSPPHPHHQPWAQ---------LHPSPQ----NTPQKVPVH----QHSPSEPF 562
P Q PP P Q Q P P+ +TPQK+PV + SP+ P
Sbjct: 238 QP----QQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPA 293
Query: 563 LEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPG 622
+P V GP+ P ++ Q +Q + P
Sbjct: 294 AAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK----------------PQ 335
Query: 623 GVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKE 682
G+D E+ L + + + + ++ P K KA ++ ++
Sbjct: 336 GLDPVEI----LQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQ 391
Query: 683 KKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDED 742
+ + ++ + + + A K+ + E L+K
Sbjct: 392 LRQEVVA----CMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK---------- 437
Query: 743 PGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSP---------SNTSQSEQQE 793
+++ R RQ K + Y + D + AG+ +NT + +++E
Sbjct: 438 --IEQERKRRQ-KHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE 494
Query: 794 SVDAEGPVVEKIMSS-----RSVKKQKESGEEV----EIEEFYVKYKNFSYLHCQWASIE 844
+ E + ++M+ R + QK+ + +E+ N + H Q + +
Sbjct: 495 TERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAK 554
Query: 845 DLEKDKRIQQKIKRFKAKQGQNKFL----------SEIEDELFNPDYVEVDRIMDFARST 894
EK KR ++K K + +G L S++ D + E +++ +
Sbjct: 555 --EKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA- 611
Query: 895 DDRGEPVTHYLVKWCSLP--YE----------DSTWERRQDIDQAKIEEFEKLMSREPET 942
P L W + YE DS +E + +++ +E E+ + +P +
Sbjct: 612 -----PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNS 666
Query: 943 ERVERPPA------------DDWKKSESSREYKN--------------------NNKLRE 970
E V A D++ S+R ++ N L+
Sbjct: 667 EEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
Query: 971 YQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIP 1029
YQL+G+ W++ + N N ILADEMGLGKTIQ+I + Y + K ++GP+L+I PLST+
Sbjct: 727 YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 786
Query: 1030 NWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1088
NW EF W V + Y G+ A RR++ PQ R S KF+ ++TT+E I+
Sbjct: 787 NWTYEFDKWAPSVVKISYKGTPAMRRSLV--------PQLR----SGKFNVLLTTYEYII 834
Query: 1089 TDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTVEELFSL 1147
D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
Query: 1148 LHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1194
L+FL P+ F S +TF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
Query: 1195 EKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLNTMMELR 1249
E L K E +I+ +++ +QK YR + K L+ G G+ L+NT+M+LR
Sbjct: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
Query: 1250 KCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRV 1309
K CNHPY+ EE E ++ + + +A+GK L+D++LPKL+A HRV
Sbjct: 1014 KICNHPYMFQHIEESFAEHLGYSNGVING----AELYRASGKFELLDRILPKLRATNHRV 1069
Query: 1310 LIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1369
L+F QM + I+EDY R + Y R+DG + R A + +F++P S F+FLL TRAG
Sbjct: 1070 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1129
Query: 1370 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429
GLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V++ RL T NS E ++ A
Sbjct: 1130 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1189
Query: 1430 LKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCE----E 1485
KL +D+ V+Q A Q+ S E R+ A+++ E+E + E E
Sbjct: 1190 YKLNVDQKVIQ-------AGMFDQKSSSHE-----RRAFLQAILEHEEENEEEDEVPDDE 1237
Query: 1486 DIDQILLRR 1494
++Q++ RR
Sbjct: 1238 TLNQMIARR 1246
Score = 59.3 bits (142), Expect = 6e-08
Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 28/274 (10%)
Query: 399 MKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQS 458
M ++P P P PG P + P P P P + + GP ++
Sbjct: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILG----PSPGPGPSPGSVHSMMGPSPGPPSVSHP 56
Query: 459 RPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQ 518
P +G + P+E M P G+ D +++ + G +P
Sbjct: 57 MPTMGSTDFPQEGMHQMHK---PIDGIHDKGIVEDIHCGSMKGTGMRP------------ 101
Query: 519 PHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKV--PVHQHSPSEPFLEKPVPDMTQVSGP 576
PHPG+ SP H Q + HPSP P+ V P+ P+ P + P P
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDP 161
Query: 577 NAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDG 636
A + P Q Q + + ++A P + + +L G
Sbjct: 162 QAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARG-------QPLPETLQLAVQGKRTLPG 214
Query: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKT 670
Q++++++++ + ++ ++ ++ + +++P +P+T
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQT 248
Score = 38.5 bits (88), Expect = 0.10
Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 50/271 (18%)
Query: 52 PSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVP 111
PS+ HP T + Q+ MH M +P +G+ H +
Sbjct: 51 PSVSHPMPTMGST---------DFPQEGMHQMHKPI--------DGI-------HDKGIV 86
Query: 112 QVPHGGS--GGGQMGVYPGM-----QNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQ 164
+ H GS G G +PGM ++H Q ++ P + P+ + +P
Sbjct: 87 EDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPH----PSPLGAPEHVSSPMSGGG 142
Query: 165 PQPQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGN 224
P P P+ G G PQ M Q FS Q Q + ++ + L +G
Sbjct: 143 PTPPQMPPSQPGALIPGDPQAMSQPN--RGPSPFSPVQLHQLRAQILAYKM----LARGQ 196
Query: 225 PFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ-QG 283
P T + Q P L+ QQ + P+ P PQ Q
Sbjct: 197 PLPET------LQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYP 314
+P +N++ S P P ++ + P
Sbjct: 251 QQQPALVNYNRPSG--PGPELSGPSTPQKLP 279
Score = 37.4 bits (85), Expect = 0.23
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTG 2643
D K++ L L+ Y ++ + V ++ Q K+K+ R R K + N G
Sbjct: 519 DQKKDRRLAYLLQQTDEYVANLTNLVWEHKQA-----QAAKEKKKRRRRKKKAEENAEGG 573
Query: 2644 EER------------------VPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
E V V + GK + G AP L WLE NP + VAP
Sbjct: 574 ESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAP 631
Score = 36.2 bits (82), Expect = 0.50
Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 38/309 (12%)
Query: 609 EDPSKGFGKD-------DFPGGVDNQELNRNSLDGSQEE-------KKKKKRSKAKKDP- 653
E+ K FG+ D+ + ++ R DG+ EE KK+K+R KDP
Sbjct: 1298 EEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA 1357
Query: 654 KEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKK 713
KE E +K+ + P +P PK K+ A T + + K P + +
Sbjct: 1358 KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEI--- 1414
Query: 714 VNKGKTEGSENSDL-DKTPPPSPPPEEDE--DPGVQKRRSSRQVKRKRYTEDLEFKISDE 770
+G + G + S++ + P PE E V ++ +++ +Y + D
Sbjct: 1415 --EGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR-----SLGDL 1467
Query: 771 EADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSS--RSVKKQKESGEEV-EIEEFY 827
E D N S+ E + V++ + S + + K++ES +E E EE
Sbjct: 1468 EKDVMLLCHNAQTFNLEGSQIYE----DSIVLQSVFKSARQKIAKEEESEDESNEEEEEE 1523
Query: 828 VKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRI 887
+ ++ S I+ +KD + + K K K + + K + D F+ D + +R
Sbjct: 1524 DEEESESEAKSVKVKIKLNKKDDKGRDKGKG-KKRPNRGKAKPVVSD--FDSDEEQDERE 1580
Query: 888 MDFARSTDD 896
TDD
Sbjct: 1581 QSEGSGTDD 1589
Score = 33.9 bits (76), Expect = 2.5
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 2387 SKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQ-LRESQVVSENGQEKVVDLS 2445
SK L + ++ +++KIE E +R K + + + Q ++ + + K+ LS
Sbjct: 418 SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 477
Query: 2446 KA--------SREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHL 2497
KA RE T + ++ + + A L + ++
Sbjct: 478 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYV 537
Query: 2498 LNGSLVDGEPPM------KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIET 2551
N + + E K++R RRK K+ +AE E
Sbjct: 538 ANLTNLVWEHKQAQAAKEKKKRRRRK------------KKAEENAEGGESALG------- 578
Query: 2552 PPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
P I Q+ D + V + E G L G +APK L WL+++P Y V
Sbjct: 579 PDGEPIDESSQMS-DLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEV 629
Score = 33.9 bits (76), Expect = 2.5
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 2165 ERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNEL---KGV 2221
+ V + A K+ + E + + E EEEEE D ++E E+EA SVK ++ K
Sbjct: 1496 QSVFKSARQKIAKEE----ESEDESNEEEEEED------EEESESEAKSVKVKIKLNKKD 1545
Query: 2222 EVGADTG-SKSISEKGSEEDEEEKLEDDDKSEESSQPE 2258
+ G D G K +G + + D++ +E Q E
Sbjct: 1546 DKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSE 1583
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 390 bits (1003), Expect = e-108
Identities = 359/1269 (28%), Positives = 559/1269 (44%), Gaps = 228/1269 (17%)
Query: 362 MHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPP------PMSPMKAMS--------NPAG 407
MHQ G ++ + +H +GT PP P SPM S +P G
Sbjct: 70 MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
Query: 408 TPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPG-AMGIGQRNMGPRNMQQSRPFIGMSS 466
P P S G P P MP QP PG + Q N GP PF +
Sbjct: 130 APEHVSSPMSGGGPTP----PQMPPSQPGALIPGDPQAMSQPNRGPS------PFSPVQL 179
Query: 467 APRELTGHMRPNGCPGVGLGDPQAIQ-----ERLIPG--QQHPGQQPSFQQLPTCPPLQP 519
+L + G P+ +Q +R +PG QQ QQ QQ Q
Sbjct: 180 --HQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
Query: 520 HPGLHHQSSPPHPHHQPWAQ---------LHPSPQ----NTPQKVPVH----QHSPSEPF 562
P Q PP P Q Q P P+ +TPQK+PV + SP+ P
Sbjct: 238 QP----QQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPA 293
Query: 563 LEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPG 622
+P V GP+ P ++ Q +Q + P
Sbjct: 294 AAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK----------------PQ 335
Query: 623 GVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKE 682
G+D E+ L + + + + ++ P K KA ++ ++
Sbjct: 336 GLDPVEI----LQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQ 391
Query: 683 KKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDED 742
+ + ++ + + + A K+ + E L+K
Sbjct: 392 LRQEVVA----CMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK---------- 437
Query: 743 PGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSP---------SNTSQSEQQE 793
+++ R RQ K + Y + D + AG+ +NT + +++E
Sbjct: 438 --IEQERKRRQ-KHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE 494
Query: 794 SVDAEGPVVEKIMSS-----RSVKKQKESGEEV----EIEEFYVKYKNFSYLHCQWASIE 844
+ E + ++M+ R + QK+ + +E+ N + H Q + +
Sbjct: 495 TERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAK 554
Query: 845 DLEKDKRIQQKIKRFKAKQGQNKFL----------SEIEDELFNPDYVEVDRIMDFARST 894
EK KR ++K K + +G L S++ D + E +++ +
Sbjct: 555 --EKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA- 611
Query: 895 DDRGEPVTHYLVKWCSLP--YE----------DSTWERRQDIDQAKIEEFEKLMSREPET 942
P L W + YE DS +E + +++ +E E+ + +P +
Sbjct: 612 -----PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNS 666
Query: 943 ERVERPPA------------DDWKKSESSREYKN--------------------NNKLRE 970
E V A D++ S+R ++ N L+
Sbjct: 667 EEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
Query: 971 YQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIP 1029
YQL+G+ W++ + N N ILADEMGLGKTIQ+I + Y + K ++GP+L+I PLST+
Sbjct: 727 YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 786
Query: 1030 NWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1088
NW EF W V + Y G+ A RR++ PQ R S KF+ ++TT+E I+
Sbjct: 787 NWTYEFDKWAPSVVKISYKGTPAMRRSLV--------PQLR----SGKFNVLLTTYEYII 834
Query: 1089 TDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTVEELFSL 1147
D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
Query: 1148 LHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1194
L+FL P+ F S +TF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
Query: 1195 EKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLNTMMELR 1249
E L K E +I+ +++ +QK YR + K L+ G G+ L+NT+M+LR
Sbjct: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
Query: 1250 KCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRV 1309
K CNHPY+ EE E ++ + + +A+GK L+D++LPKL+A HRV
Sbjct: 1014 KICNHPYMFQHIEESFAEHLGYSNGVING----AELYRASGKFELLDRILPKLRATNHRV 1069
Query: 1310 LIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1369
L+F QM + I+EDY R + Y R+DG + R A + +F++P S F+FLL TRAG
Sbjct: 1070 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1129
Query: 1370 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429
GLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V++ RL T NS E ++ A
Sbjct: 1130 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1189
Query: 1430 LKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCE----E 1485
KL +D+ V+Q A Q+ S E R+ A+++ E+E + E E
Sbjct: 1190 YKLNVDQKVIQ-------AGMFDQKSSSHE-----RRAFLQAILEHEEENEEEDEVPDDE 1237
Query: 1486 DIDQILLRR 1494
++Q++ RR
Sbjct: 1238 TLNQMIARR 1246
Score = 59.3 bits (142), Expect = 6e-08
Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 28/274 (10%)
Query: 399 MKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQS 458
M ++P P P PG P + P P P P + + GP ++
Sbjct: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILG----PSPGPGPSPGSVHSMMGPSPGPPSVSHP 56
Query: 459 RPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQ 518
P +G + P+E M P G+ D +++ + G +P
Sbjct: 57 MPTMGSTDFPQEGMHQMHK---PIDGIHDKGIVEDIHCGSMKGTGMRP------------ 101
Query: 519 PHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKV--PVHQHSPSEPFLEKPVPDMTQVSGP 576
PHPG+ SP H Q + HPSP P+ V P+ P+ P + P P
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDP 161
Query: 577 NAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDG 636
A + P Q Q + + ++A P + + +L G
Sbjct: 162 QAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARG-------QPLPETLQLAVQGKRTLPG 214
Query: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKT 670
Q++++++++ + ++ ++ ++ + +++P +P+T
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQT 248
Score = 38.5 bits (88), Expect = 0.10
Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 50/271 (18%)
Query: 52 PSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVP 111
PS+ HP T + Q+ MH M +P +G+ H +
Sbjct: 51 PSVSHPMPTMGST---------DFPQEGMHQMHKPI--------DGI-------HDKGIV 86
Query: 112 QVPHGGS--GGGQMGVYPGM-----QNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQ 164
+ H GS G G +PGM ++H Q ++ P + P+ + +P
Sbjct: 87 EDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPH----PSPLGAPEHVSSPMSGGG 142
Query: 165 PQPQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGN 224
P P P+ G G PQ M Q FS Q Q + ++ + L +G
Sbjct: 143 PTPPQMPPSQPGALIPGDPQAMSQPN--RGPSPFSPVQLHQLRAQILAYKM----LARGQ 196
Query: 225 PFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ-QG 283
P T + Q P L+ QQ + P+ P PQ Q
Sbjct: 197 PLPET------LQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYP 314
+P +N++ S P P ++ + P
Sbjct: 251 QQQPALVNYNRPSG--PGPELSGPSTPQKLP 279
Score = 37.4 bits (85), Expect = 0.23
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTG 2643
D K++ L L+ Y ++ + V ++ Q K+K+ R R K + N G
Sbjct: 519 DQKKDRRLAYLLQQTDEYVANLTNLVWEHKQA-----QAAKEKKKRRRRKKKAEENAEGG 573
Query: 2644 EER------------------VPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
E V V + GK + G AP L WLE NP + VAP
Sbjct: 574 ESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAP 631
Score = 34.7 bits (78), Expect = 1.5
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 609 EDPSKGFGKD-------DFPGGVDNQELNRNSLDGSQEE-------KKKKKRSKAKKDP- 653
E+ K FG+ D+ + ++ R DG+ EE KK+K+R KDP
Sbjct: 1298 EEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA 1357
Query: 654 KEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKA 685
KE E +K+ + P +P PK K+ A
Sbjct: 1358 KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNA 1389
Score = 34.3 bits (77), Expect = 1.9
Identities = 84/413 (20%), Positives = 144/413 (34%), Gaps = 85/413 (20%)
Query: 1876 SEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALM 1935
S E + A +H E N E ++ P+ TL + R + ++ M
Sbjct: 1208 SSSHERRAFLQAILEHEEENEEEDEV--PDDETLNQMIAR---------REEEFDLFMRM 1256
Query: 1936 KTDRRR---RRPREEVRALEAEREAIISEKRQKWTRREEADFYRVV------STFG---- 1982
DRRR R P+ + R +E ++ W +++A+ R+ FG
Sbjct: 1257 DMDRRREDARNPKRKPRLME-------EDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR 1309
Query: 1983 ----VIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPD 2038
V + + W + L++ +E V + +R R V D D
Sbjct: 1310 QRRDVDYSDALTEKQWLRAIEDGNLEEMEEE---------VRLKKRKRRRNVDKDPAKED 1360
Query: 2039 LSSIIE----PITEERASRTLYRIELLRKIREQVLHHP-----QLGERLKLCQPSLDLPE 2089
+ + P E+ + + + I + V+++ QL E +LPE
Sbjct: 1361 VEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPE 1420
Query: 2090 WWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVG 2149
++E R D K + Y L D E + N
Sbjct: 1421 YYELIRKPVDFK--KIKERIRNHKYRSLGDLEKDVMLLCHN------------------- 1459
Query: 2150 FVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEA 2209
QT + S +D VL+ + + + E EEEEE D ++E E+
Sbjct: 1460 -AQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED------EEESES 1512
Query: 2210 EASSVKNEL---KGVEVGADTG-SKSISEKGSEEDEEEKLEDDDKSEESSQPE 2258
EA SVK ++ K + G D G K +G + + D++ +E Q E
Sbjct: 1513 EAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSE 1565
Score = 33.9 bits (76), Expect = 2.5
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 2387 SKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQ-LRESQVVSENGQEKVVDLS 2445
SK L + ++ +++KIE E +R K + + + Q ++ + + K+ LS
Sbjct: 418 SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 477
Query: 2446 KA--------SREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHL 2497
KA RE T + ++ + + A L + ++
Sbjct: 478 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYV 537
Query: 2498 LNGSLVDGEPPM------KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIET 2551
N + + E K++R RRK K+ +AE E
Sbjct: 538 ANLTNLVWEHKQAQAAKEKKKRRRRK------------KKAEENAEGGESALG------- 578
Query: 2552 PPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
P I Q+ D + V + E G L G +APK L WL+++P Y V
Sbjct: 579 PDGEPIDESSQMS-DLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEV 629
Score = 32.0 bits (71), Expect = 9.5
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 633 SLDGSQEEKKKKKRSKAKKDPKEP-KEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK 691
+L+ +EE + KKR + + K+P KE EK + + + P P PK K A
Sbjct: 1333 NLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIID 1392
Query: 692 PKSSKKSSNKKPDSE 706
+ K S+ + SE
Sbjct: 1393 TVINYKDSSGRQLSE 1407
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 380 bits (975), Expect = e-104
Identities = 229/535 (42%), Positives = 318/535 (59%), Gaps = 49/535 (9%)
Query: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGI---HGPFLVIAP 1024
LR YQLEGVNWL ++ CIL DEMGLGKT Q+I IYL G GPFL++ P
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALF--IYLAGRLNDEGPFLILCP 103
Query: 1025 LSTIPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITT 1083
LS + NW+ E + + L+ V Y G + R +Q + +K +FH ++TT
Sbjct: 104 LSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQ-----------QDLKQESRFHVLLTT 152
Query: 1084 FEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEE 1143
+E+ L D L++ PW +V+DEAHRLKN++ L + L + +LLTGTP+QN+++E
Sbjct: 153 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 1144 LFSLLHFLEPSRFPSETT--FMQEFGDLKTE-EQVQKLQAILKPMMLRRLKEDVEKNLAP 1200
L+SLL F+EP F E F+Q + D++ E E +L +L+P +LRR+K +V L
Sbjct: 213 LYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPK 272
Query: 1201 KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
K E +I ++ +QKKYY+AIL K+ A L N + +LRKC +HPYL +G
Sbjct: 273 KTEVVIYHGMSALQKKYYKAILMKDLDAFENE--TAKKVKLQNILSQLRKCVDHPYLFDG 330
Query: 1261 AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD 1320
E + E + +A+GKL L+DKLL L +GGHRVL+FSQM + LD
Sbjct: 331 VEPEPFEVGDH-------------LTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLD 377
Query: 1321 ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT 1380
IL+DY+ R Y YER+DG VRG R AI F + FVFLL TRAGG+G+NLTAADT
Sbjct: 378 ILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPI--FVFLLSTRAGGVGMNLTAADT 435
Query: 1381 CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ 1440
I DSD+NPQNDLQA AR HRIGQ+KSVK+ RLI R++ E ++ KA+ KL L +++
Sbjct: 436 VIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIE 495
Query: 1441 ----SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQIL 1491
++ ++ A + QLS ++L+ G L EGS E D++ IL
Sbjct: 496 GGHFTLGAQKPAADADLQLS-----EILKFGLDKLL---ASEGSTMDEIDLESIL 542
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 370 bits (950), Expect = e-101
Identities = 256/806 (31%), Positives = 407/806 (50%), Gaps = 136/806 (16%)
Query: 790 EQQESVDAEGPVVEKIMSSRSVKKQKESGEEVE---IEEFYVK---YKNFSYLHCQWASI 843
E++E ++A G E+ M ++ E+ ++ K Y F + +
Sbjct: 32 EEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQL 91
Query: 844 EDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTH 903
E+ +K +++++K + K K+G+N D E +M R +D ++
Sbjct: 92 EEQKKKEKLERKKESLKVKKGKNSI-----------DASEEKPVMRKKRGREDESYNISE 140
Query: 904 YLVKWCSLPYEDSTWERRQDIDQAK----IEEFEK-------LMSREPETERVERPPADD 952
+ K L + +D + + +E+ +K + R ET R D
Sbjct: 141 VMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFD 200
Query: 953 WKKSESSR-------EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 1005
+ + + ++ +R YQ+EG+ WL W N N ILADEMGLGKT+Q I
Sbjct: 201 PVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIA 260
Query: 1006 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFK 1064
+ + +G+ GPFLV PLST+PNW EF+ +T ++ ++YHG+Q R+ + + +Y +
Sbjct: 261 TIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKL-VRNIYKR 319
Query: 1065 DPQGRVIKGSYKFH-AIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKM 1123
KG+ + H +IT+FE+ + D L++ W+ +++DE HR+KN C+L+ LK
Sbjct: 320 -------KGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR 372
Query: 1124 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG---------DLKTEEQ 1174
+ ++K+LLTGTPLQN + EL+SLL+FL P F +F F D+ +E+
Sbjct: 373 FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKER 432
Query: 1175 VQK----LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAIL-------- 1222
Q L IL P +LRRLK DV + PK E ++ L+ Q+ +Y AI+
Sbjct: 433 EQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMF 492
Query: 1223 ---EKNFTFLSKGGG---------------------------------------QANVP- 1239
EK LS G + N+P
Sbjct: 493 GSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPV 552
Query: 1240 ------NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLV 1293
L N MM LRKCCNHPYLI + + +EFK + ++ +GK +
Sbjct: 553 ESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKID----------EELVTNSGKFL 602
Query: 1294 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1353
++D++LP+LK GH+VL+FSQM LDIL DY R + + R+DG + + R+ + F+
Sbjct: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
Query: 1354 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1413
D + F+FL+ TRAGGLGINLTAADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V +YR
Sbjct: 663 T-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYR 721
Query: 1414 LITRNSYEREMFDKASLKLGLDKAVLQS---MSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
L+T N+ ++++ ++A+ K L+K ++ G+ L KE+ +LL+ Y
Sbjct: 722 LVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY- 780
Query: 1471 ALMDEEDEGSK---FCEEDIDQILLR 1493
+ E +GS+ ++D++ +L R
Sbjct: 781 ---EREIKGSREKVISDKDLELLLDR 803
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.2 bits (82), Expect = 0.50
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 1466 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1525
Query: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
LPE++E R D K + Y LND E + +N
Sbjct: 1526 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1567
Query: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1568 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1619
Query: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1620 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1676
Score = 33.5 bits (75), Expect = 3.2
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 30/191 (15%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKGVEVGA 2225
R++E+ E ++ A E+ +EEEE+ G G ++E + S + + G
Sbjct: 1336 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKKITGK 1395
Query: 2226 DTGSKSIS-----------------EKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNF 2268
D + S K EE E++E++ + ++S SR +
Sbjct: 1396 DIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKS--------SRKRKR 1447
Query: 2269 DEESNASMSTARDETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVL 2328
D ++ +S T +RD D S Q R A P + ++ I +AV+
Sbjct: 1448 DSDAGSSTPTTSTRSRD-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVI 1502
Query: 2329 KGKWPVNRRQM 2339
K K + RQ+
Sbjct: 1503 KYKDSSSGRQL 1513
Score = 33.1 bits (74), Expect = 4.2
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 29/138 (21%)
Query: 582 KSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVD-----NQELNRNSLDG 636
K DY S+ ++ KK K+ H A ++G F G+ ++ + +L+
Sbjct: 1375 KEVDYSDSLTEKQWLKKITGKDIHDTASSVARGL---QFQRGLQFCTRASKAIEEGTLEE 1431
Query: 637 SQEEKKKKKRS-KAK------------------KDPKEPKEPKEKKEPKEPKTPKAPKIP 677
+EE ++KK S K K KD + K+ K + P E +P P +
Sbjct: 1432 IEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLT 1491
Query: 678 KEPKEKKAKTATPKPKSS 695
K K KK A K K S
Sbjct: 1492 K--KMKKIVDAVIKYKDS 1507
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.6 bits (83), Expect = 0.38
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 35/238 (14%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP-----QLGERLKLCQPSLDL 2087
DDE P E+ + + ++KI + V+ + QL E +L
Sbjct: 1401 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKEL 1460
Query: 2088 PEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLA 2147
PE++E R D K + Y LND E + +N
Sbjct: 1461 PEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN----------------- 1501
Query: 2148 VGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQEC 2207
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1502 ---AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSES 1554
Query: 2208 EAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1555 ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1610
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1364 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1410
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1411 GRPPAEKLSPNPPNLTKKMKK 1431
Score = 32.7 bits (73), Expect = 5.5
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +E G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1363 T----------------LEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1398
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGK 2331
D D S Q R A P + ++ I +AV+K K
Sbjct: 1399 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYK 1440
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.2 bits (82), Expect = 0.50
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 1401 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1460
Query: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
LPE++E R D K + Y LND E + +N
Sbjct: 1461 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1502
Query: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1503 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1554
Query: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1555 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1611
Score = 34.3 bits (77), Expect = 1.9
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +E G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1363 T----------------LEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1398
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQM 2339
D D S Q R A P + ++ I +AV+K K + RQ+
Sbjct: 1399 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL 1448
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1364 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1410
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1411 GRPPAEKLSPNPPNLTKKMKK 1431
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.6 bits (83), Expect = 0.38
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 35/238 (14%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP-----QLGERLKLCQPSLDL 2087
DDE P E+ + + ++KI + V+ + QL E +L
Sbjct: 1404 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKEL 1463
Query: 2088 PEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLA 2147
PE++E R D K + Y LND E + +N
Sbjct: 1464 PEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN----------------- 1504
Query: 2148 VGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQEC 2207
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1505 ---AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSES 1557
Query: 2208 EAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1558 ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1613
Score = 33.1 bits (74), Expect = 4.2
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTL--- 1359
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
K EE E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1360 ----------KAIEEGTLEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1401
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGK 2331
D D S Q R A P + ++ I +AV+K K
Sbjct: 1402 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYK 1443
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1367 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1413
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1414 GRPPAEKLSPNPPNLTKKMKK 1434
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.2 bits (82), Expect = 0.50
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 1404 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1463
Query: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
LPE++E R D K + Y LND E + +N
Sbjct: 1464 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1505
Query: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1506 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1557
Query: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1558 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1614
Score = 34.7 bits (78), Expect = 1.5
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTL--- 1359
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
K EE E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1360 ----------KAIEEGTLEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1401
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQM 2339
D D S Q R A P + ++ I +AV+K K + RQ+
Sbjct: 1402 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL 1451
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1367 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1413
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1414 GRPPAEKLSPNPPNLTKKMKK 1434
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.2 bits (82), Expect = 0.50
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 1434 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1493
Query: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
LPE++E R D K + Y LND E + +N
Sbjct: 1494 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1535
Query: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1536 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1587
Query: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1588 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1644
Score = 34.3 bits (77), Expect = 1.9
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +E G
Sbjct: 1336 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1395
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1396 T----------------LEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1431
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQM 2339
D D S Q R A P + ++ I +AV+K K + RQ+
Sbjct: 1432 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL 1481
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1397 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1444 GRPPAEKLSPNPPNLTKKMKK 1464
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
Query: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
Query: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
Query: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
Query: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
Query: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 1424 MFDKASLKLGLDKAVLQS 1441
+ A KL +D+ V+Q+
Sbjct: 1214 ILAAAKYKLNVDQKVIQA 1231
Score = 53.9 bits (128), Expect = 2e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
Query: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
Query: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
Query: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
Query: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
Query: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
P PP PG Q +P P HQ +++ P
Sbjct: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
Score = 52.4 bits (124), Expect = 7e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
Query: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
+ M + + + GH P SP S + S H S+ +
Sbjct: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
Query: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
Query: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Q L ++ M G M Q +P P +A G +
Sbjct: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Query: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
Query: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
G P P P PP A + + P Q P + + +T
Sbjct: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
Query: 475 MRPNGCPGVGLGDPQAIQER 494
+P GL + +QER
Sbjct: 356 QKPR-----GLDPVEILQER 370
Score = 41.2 bits (95), Expect = 0.016
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
Query: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
Score = 38.5 bits (88), Expect = 0.10
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
Query: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
++E G L G DAPK L WL+++P Y V
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
Score = 36.2 bits (82), Expect = 0.50
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 1434 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1493
Query: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
LPE++E R D K + Y LND E + +N
Sbjct: 1494 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1535
Query: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 1536 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1587
Query: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 1588 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1644
Score = 34.3 bits (77), Expect = 1.9
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +E G
Sbjct: 1336 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1395
Query: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
E++E++ + ++S SR + D ++ +S T +R
Sbjct: 1396 T----------------LEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1431
Query: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQM 2339
D D S Q R A P + ++ I +AV+K K + RQ+
Sbjct: 1432 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL 1481
Score = 33.1 bits (74), Expect = 4.2
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 1397 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
Query: 647 SKAKKDPKEPKEPKEKKEPKE 667
+ + P P K+ K+
Sbjct: 1444 GRPPAEKLSPNPPNLTKKMKK 1464
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 278 bits (711), Expect = 6e-74
Identities = 193/533 (36%), Positives = 280/533 (52%), Gaps = 70/533 (13%)
Query: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027
L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL +Y +G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085
I NW RE W L V+ Y+GSQ R+ I+ I Y+ ++ I+TT+
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605
Query: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142
++ + R + + DE H LKN + L ++ +++LLTGTP+QN +
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192
EL SLL+F+ P F S T+ ++ KT+ E++ + I+KP +LRR+KE
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAI---LEKNFTFLSKGGGQANVPNLLNTMMELR 1249
+V K L PK++ I ++ Q++ Y + L+K+ L K NV MM+LR
Sbjct: 726 EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNV------MMQLR 779
Query: 1250 KCCNHPYLING--AEEKILEE----FKE-THNAESPD----------------------- 1279
K NHP L EK+ E KE TH +PD
Sbjct: 780 KMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRH 839
Query: 1280 ---FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335
FQL +I +GK ++ +L +LK G RV++FSQ LDILE L ++ Y R
Sbjct: 840 INNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 1395
+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND Q
Sbjct: 900 LDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
Query: 1396 AQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448
A+ RCHR+GQ+K V + +LI++ + E M KL L++ + G E +
Sbjct: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 277 bits (708), Expect = 1e-73
Identities = 189/530 (35%), Positives = 279/530 (52%), Gaps = 62/530 (11%)
Query: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027
L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL +Y +G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085
I NW RE W L V+ Y+GSQ R+ I+ I Y+ ++ I+TT+
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605
Query: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142
++ + R + + DE H LKN + L ++ +++LLTGTP+QN +
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192
EL SLL+F+ P F S T+ ++ KT+ E++ + I+KP +LRR+KE
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCC 1252
+V K L PK++ I ++ Q++ Y + + ++ + N + N MM+LRK
Sbjct: 726 EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQLRKMA 784
Query: 1253 NHPYLING--AEEKILEE----FKE-THNAESPD-------------------------- 1279
NHP L EK+ E KE TH +PD
Sbjct: 785 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 844
Query: 1280 FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDG 1338
FQL +I +GK ++ +L +LK G RV++FSQ LDILE L ++ Y R+DG
Sbjct: 845 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 904
Query: 1339 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 1398
+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND QA+
Sbjct: 905 KTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 963
Query: 1399 RCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448
RCHR+GQ+K V + +LI++ + E M KL L++ + G E +
Sbjct: 964 RCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 277 bits (708), Expect = 1e-73
Identities = 189/530 (35%), Positives = 279/530 (52%), Gaps = 62/530 (11%)
Query: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027
L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL +Y +G +GP L++ P ST
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085
I NW RE W L V+ Y+GSQ R+ I+ I Y+ ++ I+TT+
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605
Query: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142
++ + R + + DE H LKN + L ++ +++LLTGTP+QN +
Sbjct: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
Query: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192
EL SLL+F+ P F S T+ ++ KT+ E++ + I+KP +LRR+KE
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
Query: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCC 1252
+V K L PK++ I ++ Q++ Y + + ++ + N + N MM+LRK
Sbjct: 726 EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQLRKMA 784
Query: 1253 NHPYLING--AEEKILEE----FKE-THNAESPD-------------------------- 1279
NHP L EK+ E KE TH +PD
Sbjct: 785 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 844
Query: 1280 FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDG 1338
FQL +I +GK ++ +L +LK G RV++FSQ LDILE L ++ Y R+DG
Sbjct: 845 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 904
Query: 1339 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 1398
+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND QA+
Sbjct: 905 KTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 963
Query: 1399 RCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448
RCHR+GQ+K V + +LI++ + E M KL L++ + G E +
Sbjct: 964 RCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 254 bits (649), Expect = 9e-67
Identities = 216/802 (26%), Positives = 365/802 (45%), Gaps = 103/802 (12%)
Query: 689 TPKPKSSKKSSNKKPDSEASALKKKVN-------KGKTEGSENSDLDKTPPPSPPP---E 738
T P+ +K K +EAS +K + + K +G K P P PP +
Sbjct: 250 TQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQ 309
Query: 739 EDEDPGVQKRRSSRQVKR-KRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDA 797
P + R S++ +R K++ + L+ + + R P + + E D+
Sbjct: 310 NKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKAR-RPWESDMRPEAEG-DS 367
Query: 798 EGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIK 857
EG E + ++++E +EVE E + Y ++ L K + Q+K+
Sbjct: 368 EGEESEYFPTE---EEEEEEDDEVEGAEADLSGDGTDY------ELKPLPKGGKRQKKVP 418
Query: 858 RFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDST 917
+ EI+D+ F E + A S + G + ++ ED
Sbjct: 419 -----------VQEIDDDFFPSSGEEAE-----AASVGEGGGG-GRKVGRYRDDGDEDYY 461
Query: 918 WERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVN 977
+R + ++ ++++ EK + E ++E + + +K + KL +YQ GV
Sbjct: 462 KQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK-----KLFKYQQTGVR 516
Query: 978 WLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIH-----------GPFLVIAPLS 1026
WL IL DEMGLGKTIQ I FL + I GP +++ P +
Sbjct: 517 WLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTT 576
Query: 1027 TIPNWEREFRTW-TELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI-ITTF 1084
+ W +EF TW V + H + + + + ++I+ H I IT++
Sbjct: 577 VMHQWVKEFHTWWPPFRVAILHETGS-----------YTHKKEKLIRDVAHCHGILITSY 625
Query: 1085 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1144
I ++ W V++DE H+++N N + K H+++L+G+P+QN + EL
Sbjct: 626 SYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 685
Query: 1145 FSLLHFLEPSRFPSETTFMQEF------GDLKTEEQVQK---------LQAILKPMMLRR 1189
+SL F+ P + + FM++F G VQ L+ + P +LRR
Sbjct: 686 WSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRR 745
Query: 1190 LKEDVEKNLA--PKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMME 1247
+K DV+ +L+ K E ++ LT+ Q K Y+ ++ + G + + ++
Sbjct: 746 MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM----QIFSGLIA 801
Query: 1248 LRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQ----AMIQAAGKLVLIDKLLPKLK 1303
LRK CNHP L +G + + PD +L+ + +GK+++++ LL
Sbjct: 802 LRKICNHPDLFSGGPKNL---------KGLPDDELEEDQFGYWKRSGKMIVVESLLKIWH 852
Query: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
G RVL+FSQ + LDILE +L ++Y Y ++DG RQ I R+++ D+ FVFL
Sbjct: 853 KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFL 911
Query: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
L TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V +YRL+T + E +
Sbjct: 912 LTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK 971
Query: 1424 MFDKASLKLGLDKAVLQSMSGR 1445
++ + K L VL+ R
Sbjct: 972 IYHRQIFKQFLTNRVLKDPKQR 993
Score = 32.7 bits (73), Expect = 5.5
Identities = 64/312 (20%), Positives = 118/312 (37%), Gaps = 54/312 (17%)
Query: 579 QLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQ 638
+L+++ P Q PQ+++KK + I+ + S G + ++ L +
Sbjct: 238 ELIRTGQMTPFGTQIPQKQEKKPRK--IMLNEAS----------GFEKYLADQAKLSFER 285
Query: 639 EEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKS 698
+++ KR+ A+K P P TP AP K KKA+ + K + KK
Sbjct: 286 KKQGCNKRA-ARKAPA-------------PVTPPAPVQNKNKPNKKARVLSKKEERLKKH 331
Query: 699 SNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKR 758
KK A + KV K SD+ P E + G + + + +
Sbjct: 332 I-KKLQKRALQFQGKVGLPKARRPWESDM-------RPEAEGDSEGEESEYFPTEEEEEE 383
Query: 759 YTEDLEFKISDEEADDADAAGRDSPSNTSQSEQ---QESVDAEGPVVEKIMSSRSVKKQK 815
+++E +D D D + P + ++ QE D P + + SV +
Sbjct: 384 EDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEAEAASVGEGG 443
Query: 816 ESGEEV-----EIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFLS 870
G +V + +E Y K + +W + R+Q K KR K + + +
Sbjct: 444 GGGRKVGRYRDDGDEDYYKQR-----LRRWNKL-------RLQDKEKRLKLEDDSEESDA 491
Query: 871 EIEDELFNPDYV 882
E ++ P ++
Sbjct: 492 EFDEGFKVPGFL 503
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 228 bits (580), Expect = 9e-59
Identities = 161/564 (28%), Positives = 259/564 (45%), Gaps = 96/564 (17%)
Query: 962 YKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEI-YLKGIHGP-- 1018
Y N LR+YQ EG +L ++ + CIL D+MGLGKT+Q I+FL + + KG
Sbjct: 128 YTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIE 187
Query: 1019 -----------------------FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRT 1055
FL++APLS + NW+ E TW V V HG++
Sbjct: 188 NNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNEL 247
Query: 1056 IQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNC 1115
I++ + K +TT+E + EL ++ W V++DEAHR+KN
Sbjct: 248 IRVKQR--------------KCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKA 293
Query: 1116 KLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQ- 1174
++ E +K + ++ LTGT LQN ++EL+ ++ + P S T F ++F D Q
Sbjct: 294 RVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQR 353
Query: 1175 --------------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRA 1220
+Q+L + LRR K ++ L KE+ ++ LT+ QK Y+
Sbjct: 354 HTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
Query: 1221 ILE----------------------KNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
+LE +N + + G+ L+ + L+K NH L+
Sbjct: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
Query: 1259 NGA-----EEKILEEFKETHNAESPDFQLQAMIQA---------AGKLVLIDKLLPKLKA 1304
A +E +++ + + PDF ++ A +GK+ ++ +LL +
Sbjct: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRK 533
Query: 1305 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1364
+VL+FS + LD+L+ Y + Y R+DG + R + F+ D + L+
Sbjct: 534 NRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQ-DVNICLV 592
Query: 1365 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1424
T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ + VK+ RLI+ + E M
Sbjct: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
Query: 1425 FDKASLKLGLDKAVLQSMSGRENA 1448
+ + K L V+ G ENA
Sbjct: 653 YLRQIYKQQLHCVVV----GSENA 672
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,000,127
Number of Sequences: 37866
Number of extensions: 7278709
Number of successful extensions: 71558
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 1710
Number of HSP's that attempted gapping in prelim test: 35473
Number of HSP's gapped (non-prelim): 25143
length of query: 2997
length of database: 18,247,518
effective HSP length: 120
effective length of query: 2877
effective length of database: 13,703,598
effective search space: 39425251446
effective search space used: 39425251446
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.