Guide to the Human Genome
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Name: WIPI2 Sequence: fasta or formatted (436aa) NCBI GI: 54111428
Description:

WD repeat domain, phosphoinositide interacting 2 isoform b

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [443aa] WD repeat domain, phosphoinositide interacting 2 isoform c
alt prot [425aa] WD repeat domain, phosphoinositide interacting 2 isoform d
alt prot [384aa] WD repeat domain, phosphoinositide interacting 2 isoform e
alt prot [454aa] WD repeat domain, phosphoinositide interacting 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         39           3
 C cysteine            3.2         14           1
 D aspartate           4.8         21           2
 E glutamate           6.2         27           2
 F phenylalanine       4.1         18           2
 G glycine             6.7         29           2
 H histidine           2.1          9           1
 I isoleucine          5.0         22           1
 K lysine              5.0         22           2
 L leucine            10.6         46           2
 M methionine          2.3         10           1
 N asparagine          4.4         19           2
 P proline             4.6         20           2
 Q glutamine           3.0         13           1
 R arginine            4.1         18           2
 S serine              8.7         38           3
 T threonine           6.9         30           2
 V valine              5.7         25           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain, phosphoinositide interacting 2 iso... 
WIPI2                 0.987   WD repeat domain, phosphoinositide interacting 2 isof...
WIPI2                 0.963   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.950   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.843   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI1                 0.541   WD repeat domain, phosphoinositide interacting 1 [H...
WDR45L                0.136   WDR45-like 
WDR45                 0.090   WD repeat domain 45 isoform 2 
WDR45                 0.088   WD repeat domain 45 isoform 1 
TAF5                  0.029   TBP-associated factor 5 
CIRH1A                0.020   cirhin 
WDR69                 0.018   WD repeat domain 69 
WDR51A                0.015   WD repeat domain 51A isoform 2 
WDR51A                0.015   WD repeat domain 51A isoform 3 
WDR51A                0.015   WD repeat domain 51A isoform 1 
BCAS3                 0.014   breast carcinoma amplified sequence 3 isoform 1 [Ho...
BCAS3                 0.014   breast carcinoma amplified sequence 3 isoform 2 [Ho...
WDR51B                0.012   WD repeat domain 51B 
WDHD1                 0.011   WD repeat and HMG-box DNA binding protein 1 isoform 1...
PRPF19                0.011   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
THOC3                 0.011   THO complex 3 
SMU1                  0.009   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR61                 0.009   WD repeat domain 61 
DMXL1                 0.009   Dmx-like 1 
GEMIN5                0.008   gemin 5 
GNB2                  0.008   guanine nucleotide-binding protein, beta-2 subunit [...
KIF21A                0.008   kinesin family member 21A 
WDHD1                 0.008   WD repeat and HMG-box DNA binding protein 1 isoform ...
WDR90                 0.008   WD repeat domain 90 
TLE1                  0.007   transducin-like enhancer protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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