Guide to the Human Genome
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Name: GEMIN5 Sequence: fasta or formatted (1508aa) NCBI GI: 157739942
Description:

gemin 5

Referenced in:

Capping and Splicing
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        105           2
 C cysteine            2.7         41           2
 D aspartate           4.6         70           2
 E glutamate           7.7        116           3
 F phenylalanine       3.0         45           2
 G glycine             6.3         95           3
 H histidine           3.6         55           2
 I isoleucine          4.2         63           2
 K lysine              6.2         93           5
 L leucine            10.7        162           3
 M methionine          1.3         19           1
 N asparagine          3.2         48           2
 P proline             5.6         84           2
 Q glutamine           4.6         69           3
 R arginine            4.6         69           2
 S serine              8.4        127           4
 T threonine           5.8         87           1
 V valine              5.8         88           2
 W tryptophan          2.3         35           2
 Y tyrosine            2.5         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gemin 5 
WDR17                 0.023   WD repeat domain 17 isoform 2 
WDR17                 0.023   WD repeat domain 17 isoform 1 
CDC20                 0.015   cell division cycle 20 
NLE1                  0.014   Notchless gene homolog isoform a 
HIRA                  0.013   HIR histone cell cycle regulation defective homolog ...
TBL1XR1               0.013   transducin (beta)-like 1 X-linked receptor 1 
FZR1                  0.013   Fzr1 protein isoform 1 
FZR1                  0.013   Fzr1 protein isoform 3 
FZR1                  0.013   Fzr1 protein isoform 2 
TBL1X                 0.012   transducin beta-like 1X isoform b 
TBL1X                 0.012   transducin beta-like 1X isoform b 
TBL1X                 0.012   transducin beta-like 1X isoform a 
TBL1X                 0.012   transducin beta-like 1X isoform a 
KATNB1                0.012   katanin p80 subunit B 1 
TBL1Y                 0.011   transducin beta-like 1Y 
TBL1Y                 0.011   transducin beta-like 1Y 
TBL1Y                 0.011   transducin beta-like 1Y 
PAFAH1B1              0.011   platelet-activating factor acetylhydrolase, isoform I...
WDR5B                 0.011   WD repeat domain 5B 
WDR26                 0.010   WD repeat domain 26 isoform b 
WDR26                 0.010   WD repeat domain 26 isoform a 
PEX7                  0.010   peroxisomal biogenesis factor 7 
RFWD2                 0.010   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.010   ring finger and WD repeat domain 2 isoform d24 [Homo...
WSB2                  0.010   WD SOCS-box protein 2 
RBBP4                 0.010   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.010   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.010   retinoblastoma binding protein 4 isoform a 
STRN4                 0.010   zinedin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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