Guide to the Human Genome
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Name: WDR45 Sequence: fasta or formatted (360aa) NCBI GI: 71483646
Description:

WD repeat domain 45 isoform 2

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [361aa] WD repeat domain 45 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         20           1
 C cysteine            3.9         14           2
 D aspartate           7.2         26           4
 E glutamate           4.2         15           1
 F phenylalanine       5.6         20           1
 G glycine             6.4         23           3
 H histidine           2.5          9           1
 I isoleucine          4.4         16           1
 K lysine              5.8         21           1
 L leucine             9.7         35           2
 M methionine          1.9          7           1
 N asparagine          4.2         15           1
 P proline             4.4         16           1
 Q glutamine           3.6         13           2
 R arginine            5.3         19           2
 S serine              9.2         33           2
 T threonine           5.6         20           1
 V valine              8.1         29           2
 W tryptophan          0.6          2           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 45 isoform 2 
WDR45                 0.993   WD repeat domain 45 isoform 1 
WDR45L                0.421   WDR45-like 
WIPI1                 0.126   WD repeat domain, phosphoinositide interacting 1 [H...
WIPI2                 0.107   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.107   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.100   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.100   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.100   WD repeat domain, phosphoinositide interacting 2 isof...
WDR48                 0.020   WD repeat domain 48 
WSB2                  0.020   WD SOCS-box protein 2 
BCAS3                 0.018   breast carcinoma amplified sequence 3 isoform 1 [Ho...
BCAS3                 0.018   breast carcinoma amplified sequence 3 isoform 2 [Ho...
TLE3                  0.016   transducin-like enhancer protein 3 isoform b 
TLE3                  0.016   transducin-like enhancer protein 3 isoform c 
TLE3                  0.016   transducin-like enhancer protein 3 isoform a 
WDR18                 0.014   WD repeat domain 18 
SMU1                  0.014   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR1                  0.014   WD repeat-containing protein 1 isoform 1 
PAFAH1B1              0.013   platelet-activating factor acetylhydrolase, isoform I...
LRRK2                 0.013   leucine-rich repeat kinase 2 
COPB2                 0.013   coatomer protein complex, subunit beta 2 (beta prime)...
NWD1                  0.011   NACHT and WD repeat domain containing 1 
WDR53                 0.011   WD repeat domain 53 
TBL3                  0.011   transducin beta-like 3 
WDR5                  0.010   WD repeat domain 5 
WDR5                  0.010   WD repeat domain 5 
WDR3                  0.010   WD repeat-containing protein 3 
WDR5B                 0.010   WD repeat domain 5B 
AAMP                  0.010   angio-associated, migratory cell protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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