BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|53933210 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 isoform 2 [Homo sapiens] (125 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|53933210 family with sequence similarity 19 (chemokine (C-C m... 261 1e-70 gi|131887988 family with sequence similarity 19 (chemokine (C-C ... 199 3e-52 gi|30425496 family with sequence similarity 19 (chemokine (C-C m... 104 2e-23 gi|32698882 family with sequence similarity 19 (chemokine (C-C m... 102 6e-23 gi|53988383 family with sequence similarity 19 (chemokine (C-C m... 102 6e-23 gi|50962799 family with sequence similarity 19 (chemokine (C-C m... 99 8e-22 gi|33300649 family with sequence similarity 19 (chemokine (C-C m... 97 3e-21 gi|52486734 family with sequence similarity 19 (chemokine (C-C m... 53 5e-08 gi|54873613 agrin [Homo sapiens] 32 0.12 gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 29 1.1 gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 29 1.1 gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 29 1.1 gi|4557679 jagged 1 precursor [Homo sapiens] 28 1.4 gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo ... 28 2.3 gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo ... 28 2.3 gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 28 2.3 gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 28 2.3 gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 28 2.3 gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 27 3.1 gi|110735443 delta-like 1 [Homo sapiens] 27 4.0 gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens] 27 4.0 gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens] 27 5.2 gi|239750755 PREDICTED: hypothetical protein XP_002347525 [Homo ... 27 5.2 gi|239745527 PREDICTED: hypothetical protein XP_002343511 [Homo ... 27 5.2 gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 27 5.2 gi|239756221 PREDICTED: similar to hCG2003024 [Homo sapiens] 26 6.8 gi|239752583 PREDICTED: hypothetical protein XP_002348171 [Homo ... 26 6.8 gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens] 26 6.8 gi|239745544 PREDICTED: hypothetical protein XP_002343513 [Homo ... 26 6.8 gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens] 26 6.8 >gi|53933210 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 isoform 2 [Homo sapiens] Length = 125 Score = 261 bits (666), Expect = 1e-70 Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR 60 MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR Sbjct: 1 MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR 60 Query: 61 CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK Sbjct: 61 CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 Query: 121 TTTVS 125 TTTVS Sbjct: 121 TTTVS 125 >gi|131887988 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 isoform 1 [Homo sapiens] Length = 132 Score = 199 bits (507), Expect = 3e-52 Identities = 94/94 (100%), Positives = 94/94 (100%) Query: 32 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 91 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD Sbjct: 39 QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 98 Query: 92 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS Sbjct: 99 MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132 >gi|30425496 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 [Homo sapiens] Length = 131 Score = 104 bits (260), Expect = 2e-23 Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 21 LVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVD 80 +V A K + GTCE+V L R ++ + QT +C+C GQ+AGTTRA P+CVD Sbjct: 27 VVSSANHHKAHHVKTGTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVD 86 Query: 81 ARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125 A I++ K WC M PCLEGE C +L +R GW+C+ G ++KTT V+ Sbjct: 87 ASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSS-GNKVKTTRVT 130 >gi|32698882 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 [Homo sapiens] Length = 140 Score = 102 bits (255), Expect = 6e-23 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 10 LAGAALCCFLVLVIHAQFLK----EGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRK 65 LA + C ++ +Q L+ Q+ GTCE+V + R ++ R QT +C+C Sbjct: 21 LAYVLMVCCKLMSASSQHLRGHAGHHQIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFP 80 Query: 66 GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125 GQ+AGTTRA+P+CV+A I+ K WC M PCLEGE C +L + SGW+C+ G ++KTT V+ Sbjct: 81 GQVAGTTRAQPSCVEASIVIQKWWCHMNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139 >gi|53988383 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 [Homo sapiens] Length = 140 Score = 102 bits (255), Expect = 6e-23 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 10 LAGAALCCFLVLVIHAQFLK----EGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRK 65 LA + C ++ +Q L+ Q+ GTCE+V + R ++ R QT +C+C Sbjct: 21 LAYVLMVCCKLMSASSQHLRGHAGHHQIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFP 80 Query: 66 GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125 GQ+AGTTRA+P+CV+A I+ K WC M PCLEGE C +L + SGW+C+ G ++KTT V+ Sbjct: 81 GQVAGTTRAQPSCVEASIVIQKWWCHMNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139 >gi|50962799 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 [Homo sapiens] Length = 133 Score = 99.0 bits (245), Expect = 8e-22 Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 7 LWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKG 66 LW A A L C L Q + GTCE++ R ++ R QT +C+C G Sbjct: 13 LWISACAMLLCHGSLQHTFQQHHLHRPEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLPG 72 Query: 67 QIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTV 124 ++AGTTR RP+CVDA I+ K WC+M PCLEGE C L + SGW C G +IKTT + Sbjct: 73 KVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCA-TGNKIKTTRI 129 >gi|33300649 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 isoform 1 [Homo sapiens] Length = 133 Score = 97.1 bits (240), Expect = 3e-21 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 36 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPC 95 GTCE++ R ++ R QT +C+C GQ+AGTTRA+P+CVDA I+ + WC M PC Sbjct: 44 GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC 103 Query: 96 LEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125 L GE C +L + SGW+C+ G ++KTT V+ Sbjct: 104 LPGEECKVLPDLSGWSCSS-GHKVKTTKVT 132 >gi|52486734 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 isoform 2 [Homo sapiens] Length = 169 Score = 53.1 bits (126), Expect = 5e-08 Identities = 22/45 (48%), Positives = 31/45 (68%) Query: 36 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVD 80 GTCE++ R ++ R QT +C+C GQ+AGTTRA+P+CVD Sbjct: 44 GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVD 88 >gi|54873613 agrin [Homo sapiens] Length = 2045 Score = 32.0 bits (71), Expect = 0.12 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 13/100 (13%) Query: 31 GQLAAG-TCEIVTLDRDSSQ---PRRTIARQTARCACRKGQIAGTTRARPACVDARIIKT 86 G +AAG T T R S PR T++ K A TTR P +R+ Sbjct: 1263 GAIAAGATARATTASRLPSSAVTPRAPHPSHTSQPVA-KTTAAPTTRRPPTTAPSRVPGR 1321 Query: 87 K--------QWCDMLPCLEGEGCDLLINRSGWTCTQPGGR 118 + + CD PC G C G+TC+ P GR Sbjct: 1322 RPPAPQQPPKPCDSQPCFHGGTCQDWALGGGFTCSCPAGR 1361 >gi|33598931 scavenger receptor class F, member 1 isoform 3 precursor [Homo sapiens] Length = 569 Score = 28.9 bits (63), Expect = 1.1 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 56 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113 + + RCACR G + + CV R C P G C+L G C Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262 Query: 114 QPGGRIK 120 GR K Sbjct: 263 HSCGRCK 269 >gi|33598929 scavenger receptor class F, member 1 isoform 1 precursor [Homo sapiens] Length = 830 Score = 28.9 bits (63), Expect = 1.1 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 56 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113 + + RCACR G + + CV R C P G C+L G C Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262 Query: 114 QPGGRIK 120 GR K Sbjct: 263 HSCGRCK 269 >gi|145309306 scavenger receptor class F, member 1 isoform 5 precursor [Homo sapiens] Length = 744 Score = 28.9 bits (63), Expect = 1.1 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 56 RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113 + + RCACR G + + CV R C P G C+L G C Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262 Query: 114 QPGGRIK 120 GR K Sbjct: 263 HSCGRCK 269 >gi|4557679 jagged 1 precursor [Homo sapiens] Length = 1218 Score = 28.5 bits (62), Expect = 1.4 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 69 AGTTRARPACVDARIIKT---KQWCDMLPCLEGEGCDLLIN 106 A A+P CV+A+ K +CD LP G+ CD+ IN Sbjct: 413 ANECEAKP-CVNAKSCKNLIASYYCDCLPGWMGQNCDININ 452 Score = 26.6 bits (57), Expect = 5.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 78 CVDARIIKTKQWCDMLPCLEGEG 100 C++ RI +K WC PCL +G Sbjct: 885 CLNGRIACSKVWCGPRPCLLHKG 907 >gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo sapiens] Length = 260 Score = 27.7 bits (60), Expect = 2.3 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ LEG C++ + SG QPGG ++ Sbjct: 120 WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 151 >gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo sapiens] Length = 172 Score = 27.7 bits (60), Expect = 2.3 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ LEG C++ + SG QPGG ++ Sbjct: 7 WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 38 >gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo sapiens] Length = 1977 Score = 27.7 bits (60), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 30 EGQLAAGTCEIVTLDRDSSQPRRTIAR 56 EG L +GT E +++DSSQP + R Sbjct: 818 EGDLKSGTAETEPVEQDSSQPSLPLVR 844 >gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo sapiens] Length = 1975 Score = 27.7 bits (60), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 30 EGQLAAGTCEIVTLDRDSSQPRRTIAR 56 EG L +GT E +++DSSQP + R Sbjct: 818 EGDLKSGTAETEPVEQDSSQPSLPLVR 844 >gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo sapiens] Length = 1972 Score = 27.7 bits (60), Expect = 2.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 30 EGQLAAGTCEIVTLDRDSSQPRRTIAR 56 EG L +GT E +++DSSQP + R Sbjct: 813 EGDLKSGTAETEPVEQDSSQPSLPLVR 839 >gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo sapiens] Length = 2517 Score = 27.3 bits (59), Expect = 3.1 Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 77 ACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGW 110 +C + Q CD + C +G GC ++ GW Sbjct: 2153 SCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGW 2186 >gi|110735443 delta-like 1 [Homo sapiens] Length = 723 Score = 26.9 bits (58), Expect = 4.0 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 66 GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGG 117 GQ + T RP A CD PC G C L N ++CT P G Sbjct: 308 GQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLEN--SYSCTCPPG 357 >gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens] Length = 148 Score = 26.9 bits (58), Expect = 4.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG +K Sbjct: 7 WVFLVAILQGVHCEVQLVESGRGLAQPGGYLK 38 >gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens] Length = 256 Score = 26.6 bits (57), Expect = 5.2 Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 88 QWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 +W ++ LEG C++ + SG +PGG ++ Sbjct: 30 RWVFLVAILEGVQCEVQLVESGGGLVKPGGSLR 62 >gi|239750755 PREDICTED: hypothetical protein XP_002347525 [Homo sapiens] Length = 232 Score = 26.6 bits (57), Expect = 5.2 Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 88 QWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 +W ++ LEG C++ + SG +PGG ++ Sbjct: 6 RWVFLVAILEGVQCEVQLVESGGGLVKPGGSLR 38 >gi|239745527 PREDICTED: hypothetical protein XP_002343511 [Homo sapiens] Length = 147 Score = 26.6 bits (57), Expect = 5.2 Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + +SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVQSGGGLVQPGGSLR 38 >gi|41327708 crumbs homolog 1 precursor [Homo sapiens] Length = 1406 Score = 26.6 bits (57), Expect = 5.2 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Query: 76 PACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTC 112 PA + + QWC PC G C ++ G+ C Sbjct: 914 PALTSGKACEEVQWCGFSPCPHGAQCQPVL--QGFEC 948 >gi|239756221 PREDICTED: similar to hCG2003024 [Homo sapiens] Length = 135 Score = 26.2 bits (56), Expect = 6.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38 >gi|239752583 PREDICTED: hypothetical protein XP_002348171 [Homo sapiens] Length = 146 Score = 26.2 bits (56), Expect = 6.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38 >gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens] Length = 181 Score = 26.2 bits (56), Expect = 6.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38 >gi|239745544 PREDICTED: hypothetical protein XP_002343513 [Homo sapiens] Length = 146 Score = 26.2 bits (56), Expect = 6.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38 >gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens] Length = 181 Score = 26.2 bits (56), Expect = 6.8 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 89 WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120 W ++ L+G C++ + SG QPGG ++ Sbjct: 7 WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.326 0.136 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,703,083 Number of Sequences: 37866 Number of extensions: 173736 Number of successful extensions: 527 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 490 Number of HSP's gapped (non-prelim): 41 length of query: 125 length of database: 18,247,518 effective HSP length: 90 effective length of query: 35 effective length of database: 14,839,578 effective search space: 519385230 effective search space used: 519385230 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.