Guide to the Human Genome
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Search of human proteins with 53933210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|53933210 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 2 [Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|53933210 family with sequence similarity 19 (chemokine (C-C m...   261   1e-70
gi|131887988 family with sequence similarity 19 (chemokine (C-C ...   199   3e-52
gi|30425496 family with sequence similarity 19 (chemokine (C-C m...   104   2e-23
gi|32698882 family with sequence similarity 19 (chemokine (C-C m...   102   6e-23
gi|53988383 family with sequence similarity 19 (chemokine (C-C m...   102   6e-23
gi|50962799 family with sequence similarity 19 (chemokine (C-C m...    99   8e-22
gi|33300649 family with sequence similarity 19 (chemokine (C-C m...    97   3e-21
gi|52486734 family with sequence similarity 19 (chemokine (C-C m...    53   5e-08
gi|54873613 agrin [Homo sapiens]                                       32   0.12 
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu...    29   1.1  
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    29   1.1  
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec...    29   1.1  
gi|4557679 jagged 1 precursor [Homo sapiens]                           28   1.4  
gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo ...    28   2.3  
gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo ...    28   2.3  
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo...    28   2.3  
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo...    28   2.3  
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s...    28   2.3  
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    27   3.1  
gi|110735443 delta-like 1 [Homo sapiens]                               27   4.0  
gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens]           27   4.0  
gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens]           27   5.2  
gi|239750755 PREDICTED: hypothetical protein XP_002347525 [Homo ...    27   5.2  
gi|239745527 PREDICTED: hypothetical protein XP_002343511 [Homo ...    27   5.2  
gi|41327708 crumbs homolog 1 precursor [Homo sapiens]                  27   5.2  
gi|239756221 PREDICTED: similar to hCG2003024 [Homo sapiens]           26   6.8  
gi|239752583 PREDICTED: hypothetical protein XP_002348171 [Homo ...    26   6.8  
gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens]           26   6.8  
gi|239745544 PREDICTED: hypothetical protein XP_002343513 [Homo ...    26   6.8  
gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens]           26   6.8  

>gi|53933210 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A5 isoform 2 [Homo sapiens]
          Length = 125

 Score =  261 bits (666), Expect = 1e-70
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR 60
           MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR
Sbjct: 1   MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTAR 60

Query: 61  CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK
Sbjct: 61  CACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120

Query: 121 TTTVS 125
           TTTVS
Sbjct: 121 TTTVS 125


>gi|131887988 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A5 isoform 1 [Homo sapiens]
          Length = 132

 Score =  199 bits (507), Expect = 3e-52
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 32  QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 91
           QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD
Sbjct: 39  QLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCD 98

Query: 92  MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
           MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS
Sbjct: 99  MLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132


>gi|30425496 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A2 [Homo sapiens]
          Length = 131

 Score =  104 bits (260), Expect = 2e-23
 Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 21  LVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVD 80
           +V  A   K   +  GTCE+V L R  ++ +     QT +C+C  GQ+AGTTRA P+CVD
Sbjct: 27  VVSSANHHKAHHVKTGTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVD 86

Query: 81  ARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
           A I++ K WC M PCLEGE C +L +R GW+C+  G ++KTT V+
Sbjct: 87  ASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSS-GNKVKTTRVT 130


>gi|32698882 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A4 [Homo sapiens]
          Length = 140

 Score =  102 bits (255), Expect = 6e-23
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 10  LAGAALCCFLVLVIHAQFLK----EGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRK 65
           LA   + C  ++   +Q L+      Q+  GTCE+V + R  ++ R     QT +C+C  
Sbjct: 21  LAYVLMVCCKLMSASSQHLRGHAGHHQIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFP 80

Query: 66  GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
           GQ+AGTTRA+P+CV+A I+  K WC M PCLEGE C +L + SGW+C+  G ++KTT V+
Sbjct: 81  GQVAGTTRAQPSCVEASIVIQKWWCHMNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139


>gi|53988383 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A4 [Homo sapiens]
          Length = 140

 Score =  102 bits (255), Expect = 6e-23
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 10  LAGAALCCFLVLVIHAQFLK----EGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRK 65
           LA   + C  ++   +Q L+      Q+  GTCE+V + R  ++ R     QT +C+C  
Sbjct: 21  LAYVLMVCCKLMSASSQHLRGHAGHHQIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFP 80

Query: 66  GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
           GQ+AGTTRA+P+CV+A I+  K WC M PCLEGE C +L + SGW+C+  G ++KTT V+
Sbjct: 81  GQVAGTTRAQPSCVEASIVIQKWWCHMNPCLEGEDCKVLPDYSGWSCSS-GNKVKTTKVT 139


>gi|50962799 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A1 [Homo sapiens]
          Length = 133

 Score = 99.0 bits (245), Expect = 8e-22
 Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 7   LWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKG 66
           LW  A A L C   L    Q     +   GTCE++   R  ++ R     QT +C+C  G
Sbjct: 13  LWISACAMLLCHGSLQHTFQQHHLHRPEGGTCEVIAAHRCCNKNRIEERSQTVKCSCLPG 72

Query: 67  QIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTV 124
           ++AGTTR RP+CVDA I+  K WC+M PCLEGE C  L + SGW C   G +IKTT +
Sbjct: 73  KVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCA-TGNKIKTTRI 129


>gi|33300649 family with sequence similarity 19 (chemokine (C-C
           motif)-like), member A3 isoform 1 [Homo sapiens]
          Length = 133

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 36  GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPC 95
           GTCE++   R  ++ R     QT +C+C  GQ+AGTTRA+P+CVDA I+  + WC M PC
Sbjct: 44  GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC 103

Query: 96  LEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
           L GE C +L + SGW+C+  G ++KTT V+
Sbjct: 104 LPGEECKVLPDLSGWSCSS-GHKVKTTKVT 132


>gi|52486734 family with sequence similarity 19 (chemokine (C-C
          motif)-like), member A3 isoform 2 [Homo sapiens]
          Length = 169

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 36 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVD 80
          GTCE++   R  ++ R     QT +C+C  GQ+AGTTRA+P+CVD
Sbjct: 44 GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVD 88


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 31   GQLAAG-TCEIVTLDRDSSQ---PRRTIARQTARCACRKGQIAGTTRARPACVDARIIKT 86
            G +AAG T    T  R  S    PR      T++    K   A TTR  P    +R+   
Sbjct: 1263 GAIAAGATARATTASRLPSSAVTPRAPHPSHTSQPVA-KTTAAPTTRRPPTTAPSRVPGR 1321

Query: 87   K--------QWCDMLPCLEGEGCDLLINRSGWTCTQPGGR 118
            +        + CD  PC  G  C       G+TC+ P GR
Sbjct: 1322 RPPAPQQPPKPCDSQPCFHGGTCQDWALGGGFTCSCPAGR 1361


>gi|33598931 scavenger receptor class F, member 1 isoform 3
           precursor [Homo sapiens]
          Length = 569

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 56  RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113
           + + RCACR G      + +  CV  R       C   P   G  C+L       G  C 
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262

Query: 114 QPGGRIK 120
              GR K
Sbjct: 263 HSCGRCK 269


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 56  RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113
           + + RCACR G      + +  CV  R       C   P   G  C+L       G  C 
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262

Query: 114 QPGGRIK 120
              GR K
Sbjct: 263 HSCGRCK 269


>gi|145309306 scavenger receptor class F, member 1 isoform 5
           precursor [Homo sapiens]
          Length = 744

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 56  RQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDL--LINRSGWTCT 113
           + + RCACR G      + +  CV  R       C   P   G  C+L       G  C 
Sbjct: 203 QDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCA 262

Query: 114 QPGGRIK 120
              GR K
Sbjct: 263 HSCGRCK 269


>gi|4557679 jagged 1 precursor [Homo sapiens]
          Length = 1218

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 69  AGTTRARPACVDARIIKT---KQWCDMLPCLEGEGCDLLIN 106
           A    A+P CV+A+  K      +CD LP   G+ CD+ IN
Sbjct: 413 ANECEAKP-CVNAKSCKNLIASYYCDCLPGWMGQNCDININ 452



 Score = 26.6 bits (57), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 78  CVDARIIKTKQWCDMLPCLEGEG 100
           C++ RI  +K WC   PCL  +G
Sbjct: 885 CLNGRIACSKVWCGPRPCLLHKG 907


>gi|239750748 PREDICTED: hypothetical protein XP_002347523 [Homo
           sapiens]
          Length = 260

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  LEG  C++ +  SG    QPGG ++
Sbjct: 120 WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 151


>gi|239750743 PREDICTED: hypothetical protein XP_002347522 [Homo
           sapiens]
          Length = 172

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  LEG  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILEGVQCEVQLVESGGGLVQPGGSLR 38


>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 1977

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 30  EGQLAAGTCEIVTLDRDSSQPRRTIAR 56
           EG L +GT E   +++DSSQP   + R
Sbjct: 818 EGDLKSGTAETEPVEQDSSQPSLPLVR 844


>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
           sapiens]
          Length = 1975

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 30  EGQLAAGTCEIVTLDRDSSQPRRTIAR 56
           EG L +GT E   +++DSSQP   + R
Sbjct: 818 EGDLKSGTAETEPVEQDSSQPSLPLVR 844


>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
           sapiens]
          Length = 1972

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 30  EGQLAAGTCEIVTLDRDSSQPRRTIAR 56
           EG L +GT E   +++DSSQP   + R
Sbjct: 813 EGDLKSGTAETEPVEQDSSQPSLPLVR 839


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
            sapiens]
          Length = 2517

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 77   ACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGW 110
            +C +       Q CD + C +G GC    ++ GW
Sbjct: 2153 SCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGW 2186


>gi|110735443 delta-like 1 [Homo sapiens]
          Length = 723

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 66  GQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGG 117
           GQ + T   RP    A        CD  PC  G  C  L N   ++CT P G
Sbjct: 308 GQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLEN--SYSCTCPPG 357


>gi|239745542 PREDICTED: similar to hCG1793095 [Homo sapiens]
          Length = 148

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG +K
Sbjct: 7   WVFLVAILQGVHCEVQLVESGRGLAQPGGYLK 38


>gi|239756213 PREDICTED: similar to hCG2042717 [Homo sapiens]
          Length = 256

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 88  QWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           +W  ++  LEG  C++ +  SG    +PGG ++
Sbjct: 30  RWVFLVAILEGVQCEVQLVESGGGLVKPGGSLR 62


>gi|239750755 PREDICTED: hypothetical protein XP_002347525 [Homo
           sapiens]
          Length = 232

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 88  QWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           +W  ++  LEG  C++ +  SG    +PGG ++
Sbjct: 6   RWVFLVAILEGVQCEVQLVESGGGLVKPGGSLR 38


>gi|239745527 PREDICTED: hypothetical protein XP_002343511 [Homo
           sapiens]
          Length = 147

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ + +SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVQSGGGLVQPGGSLR 38


>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
          Length = 1406

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 76  PACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTC 112
           PA    +  +  QWC   PC  G  C  ++   G+ C
Sbjct: 914 PALTSGKACEEVQWCGFSPCPHGAQCQPVL--QGFEC 948


>gi|239756221 PREDICTED: similar to hCG2003024 [Homo sapiens]
          Length = 135

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38


>gi|239752583 PREDICTED: hypothetical protein XP_002348171 [Homo
           sapiens]
          Length = 146

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38


>gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens]
          Length = 181

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38


>gi|239745544 PREDICTED: hypothetical protein XP_002343513 [Homo
           sapiens]
          Length = 146

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38


>gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens]
          Length = 181

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 89  WCDMLPCLEGEGCDLLINRSGWTCTQPGGRIK 120
           W  ++  L+G  C++ +  SG    QPGG ++
Sbjct: 7   WVFLVAILKGVQCEVQLVESGGGLVQPGGSLR 38


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,703,083
Number of Sequences: 37866
Number of extensions: 173736
Number of successful extensions: 527
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 41
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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