Guide to the Human Genome
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Name: LOC646057 Sequence: fasta or formatted (135aa) NCBI GI: 239756221
Description:

PREDICTED: similar to hCG2003024

Not currently referenced in the text

Other entries for this name:
alt prot {181aa} PREDICTED: similar to hCG2003024
alt prot {181aa} PREDICTED: similar to hCG2003024
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7          9           2
 C cysteine            2.2          3           1
 D aspartate           4.4          6           1
 E glutamate           5.2          7           1
 F phenylalanine       3.7          5           1
 G glycine            10.4         14           3
 H histidine           0.7          1           1
 I isoleucine          3.7          5           1
 K lysine              4.4          6           1
 L leucine            12.6         17           1
 M methionine          2.2          3           1
 N asparagine          2.2          3           1
 P proline             0.7          1           1
 Q glutamine           4.4          6           1
 R arginine            5.2          7           1
 S serine             10.4         14           2
 T threonine           5.9          8           2
 V valine              8.9         12           1
 W tryptophan          1.5          2           1
 Y tyrosine            4.4          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2003024 
LOC646057             0.914   PREDICTED: similar to hCG2003024 
LOC646057             0.910   PREDICTED: similar to hCG2003024 
LOC100290738          0.676   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.676   PREDICTED: hypothetical protein XP_002343513 
LOC100293211          0.664   PREDICTED: similar to hCG2042717 
LOC100290036          0.660   PREDICTED: hypothetical protein XP_002347522 
LOC100291190          0.660   PREDICTED: hypothetical protein XP_002347529 
LOC100291056          0.656   PREDICTED: hypothetical protein XP_002347527 
LOC100289290          0.656   PREDICTED: hypothetical protein XP_002343511 
LOC100290115          0.652   PREDICTED: hypothetical protein XP_002347523 
LOC652494             0.648   PREDICTED: similar to hCG2042717 
LOC100132941          0.648   PREDICTED: similar to Ig heavy chain 
LOC100293270          0.643   PREDICTED: similar to hCG2042717 
LOC100290320          0.643   PREDICTED: hypothetical protein XP_002347525 
LOC100132941          0.623   PREDICTED: similar to Ig heavy chain 
LOC100292999          0.598   PREDICTED: hypothetical protein 
LOC401847             0.590   PREDICTED: similar to hCG1793095 
LOC100290146          0.566   PREDICTED: hypothetical protein XP_002347524 
LOC100130811          0.381   PREDICTED: similar to hCG2038921 
LOC100130811          0.381   PREDICTED: similar to hCG2038921 
LOC100133862          0.377   PREDICTED: similar to hCG1773549 
LOC100292483          0.377   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.377   PREDICTED: hypothetical protein XP_002347494 
LOC100292611          0.361   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290528          0.361   PREDICTED: hypothetical protein XP_002347495 
LOC100292858          0.340   PREDICTED: similar to hCG2029977 
LOC100289944          0.340   PREDICTED: hypothetical protein XP_002347520 
LOC100290415          0.336   PREDICTED: hypothetical protein XP_002347493 
LOC100134397          0.316   PREDICTED: similar to hCG1812074 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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