Guide to the Human Genome
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Name: LOC100289290 Sequence: fasta or formatted (147aa) NCBI GI: 239745527
Description:

PREDICTED: hypothetical protein XP_002343511

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         11           1
 C cysteine            3.4          5           1
 D aspartate           2.7          4           1
 E glutamate           3.4          5           1
 F phenylalanine       3.4          5           1
 G glycine            12.9         19           3
 H histidine           2.7          4           1
 I isoleucine          2.0          3           1
 K lysine              3.4          5           1
 L leucine             9.5         14           1
 M methionine          3.4          5           1
 N asparagine          2.7          4           1
 P proline             2.7          4           1
 Q glutamine           5.4          8           1
 R arginine            7.5         11           1
 S serine              8.8         13           2
 T threonine           4.1          6           1
 V valine              8.2         12           1
 W tryptophan          2.0          3           1
 Y tyrosine            4.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343511 
LOC100290115          0.847   PREDICTED: hypothetical protein XP_002347523 
LOC100132941          0.786   PREDICTED: similar to Ig heavy chain 
LOC100132941          0.776   PREDICTED: similar to Ig heavy chain 
LOC100291190          0.751   PREDICTED: hypothetical protein XP_002347529 
LOC100293270          0.747   PREDICTED: similar to hCG2042717 
LOC100290320          0.747   PREDICTED: hypothetical protein XP_002347525 
LOC652494             0.747   PREDICTED: similar to hCG2042717 
LOC100293211          0.705   PREDICTED: similar to hCG2042717 
LOC100290738          0.694   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.694   PREDICTED: hypothetical protein XP_002343513 
LOC401847             0.680   PREDICTED: similar to hCG1793095 
LOC100291056          0.673   PREDICTED: hypothetical protein XP_002347527 
LOC100290036          0.658   PREDICTED: hypothetical protein XP_002347522 
LOC646057             0.648   PREDICTED: similar to hCG2003024 
LOC646057             0.644   PREDICTED: similar to hCG2003024 
LOC100292999          0.616   PREDICTED: hypothetical protein 
LOC646057             0.569   PREDICTED: similar to hCG2003024 
LOC100290146          0.484   PREDICTED: hypothetical protein XP_002347524 
LOC100134397          0.374   PREDICTED: similar to hCG1812074 
LOC642131             0.374   PREDICTED: similar to hCG1812074 
LOC642131             0.374   PREDICTED: similar to hCG1812074 
LOC642131             0.374   PREDICTED: similar to hCG1812074 
LOC100133862          0.370   PREDICTED: similar to hCG1773549 
LOC100292483          0.367   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.367   PREDICTED: hypothetical protein XP_002347494 
LOC100130811          0.356   PREDICTED: similar to hCG2038921 
LOC100130811          0.356   PREDICTED: similar to hCG2038921 
LOC100290415          0.345   PREDICTED: hypothetical protein XP_002347493 
LOC100292858          0.327   PREDICTED: similar to hCG2029977 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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