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Search of human proteins with 53832014
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53832014 choroideremia-like Rab escort protein 2 [Homo
sapiens]
(656 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] 1328 0.0
gi|9966761 choroideremia isoform a [Homo sapiens] 943 0.0
gi|224028271 choroideremia isoform b [Homo sapiens] 173 5e-43
gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] 121 2e-27
gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] 120 5e-27
gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] 76 9e-14
gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 38 0.026
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 36 0.13
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 36 0.13
gi|157276588 basonuclin 1 [Homo sapiens] 33 0.83
gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens] 33 1.1
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 32 1.4
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 32 1.9
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 2.4
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 32 2.4
gi|158187521 A-kinase anchor protein 5 [Homo sapiens] 31 4.1
gi|31542509 ADP-dependent glucokinase [Homo sapiens] 31 4.1
gi|47578107 delangin isoform B [Homo sapiens] 31 4.1
gi|47578105 delangin isoform A [Homo sapiens] 31 4.1
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 31 4.1
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens] 30 5.4
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 30 5.4
gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens] 30 5.4
gi|238550202 tubby like protein 3 isoform 2 [Homo sapiens] 30 5.4
gi|21536436 tubby like protein 3 isoform 1 [Homo sapiens] 30 5.4
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] 30 5.4
gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens] 30 5.4
gi|39932589 Rho GTPase activating protein 18 [Homo sapiens] 30 5.4
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 30 5.4
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 30 5.4
>gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens]
Length = 656
Score = 1328 bits (3437), Expect = 0.0
Identities = 656/656 (100%), Positives = 656/656 (100%)
Query: 1 MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK 60
MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQ 120
EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQ
Sbjct: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQ 120
Query: 121 KNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEK 180
KNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEK
Sbjct: 121 KNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEK 180
Query: 181 YCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYS 240
YCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYS
Sbjct: 181 YCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYS 240
Query: 241 QGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKF 300
QGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKF
Sbjct: 241 QGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKF 300
Query: 301 LTFCLEYEQHPDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSESSCTTIDGLNAT 360
LTFCLEYEQHPDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSESSCTTIDGLNAT
Sbjct: 301 LTFCLEYEQHPDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSESSCTTIDGLNAT 360
Query: 361 KNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKA 420
KNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKA
Sbjct: 361 KNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKA 420
Query: 421 IIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVP 480
IIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVP
Sbjct: 421 IIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVP 480
Query: 481 PAEPGACAVRVTELCSSTMTCMKDTYLVHLTCSSSKTAREDLESVVKKLFTPYTETEINE 540
PAEPGACAVRVTELCSSTMTCMKDTYLVHLTCSSSKTAREDLESVVKKLFTPYTETEINE
Sbjct: 481 PAEPGACAVRVTELCSSTMTCMKDTYLVHLTCSSSKTAREDLESVVKKLFTPYTETEINE 540
Query: 541 EELTKPRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEI 600
EELTKPRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEI
Sbjct: 541 EELTKPRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEI 600
Query: 601 FPTEEFCPPPPNPEDIIFDGDDKQPEAPGTNNVVMAKLESSEESKNLESPEKHLQN 656
FPTEEFCPPPPNPEDIIFDGDDKQPEAPGTNNVVMAKLESSEESKNLESPEKHLQN
Sbjct: 601 FPTEEFCPPPPNPEDIIFDGDDKQPEAPGTNNVVMAKLESSEESKNLESPEKHLQN 656
>gi|9966761 choroideremia isoform a [Homo sapiens]
Length = 653
Score = 943 bits (2438), Expect = 0.0
Identities = 470/653 (71%), Positives = 541/653 (82%), Gaps = 4/653 (0%)
Query: 1 MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK 60
MAD LP+EFDV++IGTGLPESI+AAACSRSG+RVLH+DSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQ 120
EYQ+N+DI +S V WQD I E EEAI L +KD+TIQH E FCYASQD+ ++VEE GALQ
Sbjct: 61 EYQENSDIVSDSPV-WQDQILENEEAIALSRKDKTIQHVEVFCYASQDLHEDVEEAGALQ 119
Query: 121 KNPSLGVSNTFTEVLDSA-LPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKE 179
KN +L S TE DSA LP E + S EM + T SD E +LEV E + EKE
Sbjct: 120 KNHALVTSANSTEAADSAFLPTEDESLSTMSCEMLTEQTPSSDPENALEVNGAEVTGEKE 179
Query: 180 KYCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLY 239
+C DKTC+ + S +D E+ ED ++P +NRITYSQI+KEGRRFNIDLVSKLLY
Sbjct: 180 NHCDDKTCVPSTSAED--MSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLY 237
Query: 240 SQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMK 299
S+GLLIDLLIKS+VSRY EFKN+TRILAFREG+VEQVPCSRADVFNSK+LTMVEKRMLMK
Sbjct: 238 SRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMK 297
Query: 300 FLTFCLEYEQHPDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSESSCTTIDGLNA 359
FLTFC+EYE++PDEY+ + + +F EYLKT+KLTPNLQ+ V+HSIAMTSE++ +TIDGL A
Sbjct: 298 FLTFCMEYEKYPDEYKGYEEITFYEYLKTQKLTPNLQYIVMHSIAMTSETASSTIDGLKA 357
Query: 360 TKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCK 419
TKNFL CLGR+GNTPFLFPLYGQGE+PQ FCRMCAVFGGIYCLRH VQC VVDKES +CK
Sbjct: 358 TKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCK 417
Query: 420 AIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIV 479
AIID FGQRI +++F+VEDSY E CS VQY+QISRAVLITD+S+LKTD DQQ SIL V
Sbjct: 418 AIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVLITDRSVLKTDSDQQISILTV 477
Query: 480 PPAEPGACAVRVTELCSSTMTCMKDTYLVHLTCSSSKTAREDLESVVKKLFTPYTETEIN 539
P EPG AVRV ELCSSTMTCMK TYLVHLTC+SSKTAREDLESVV+KLF PYTE EI
Sbjct: 478 PAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAREDLESVVQKLFVPYTEMEIE 537
Query: 540 EEELTKPRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQE 599
E++ KPR+LWALYFNMRDSS ISRS YN LPSNVYVCSGPDCGLGN++AVKQAETLFQE
Sbjct: 538 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE 597
Query: 600 IFPTEEFCPPPPNPEDIIFDGDDKQPEAPGTNNVVMAKLESSEESKNLESPEK 652
I P E+FCPPPPNPEDII DGD QPEA ++ + A E+ +ES NL + E+
Sbjct: 598 ICPNEDFCPPPPNPEDIILDGDSLQPEASESSAIPEANSETFKESTNLGNLEE 650
>gi|224028271 choroideremia isoform b [Homo sapiens]
Length = 110
Score = 173 bits (438), Expect = 5e-43
Identities = 82/105 (78%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Query: 1 MADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLK 60
MAD LP+EFDV++IGTGLPESI+AAACSRSG+RVLH+DSRSYYGGNWASFSFSGLLSWLK
Sbjct: 1 MADTLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLK 60
Query: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYA 105
EYQ+N+DI +S VWQD I E EEAI L +KD+TIQH E FCYA
Sbjct: 61 EYQENSDIVSDSP-VWQDQILENEEAIALSRKDKTIQHVEVFCYA 104
>gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens]
Length = 447
Score = 121 bits (303), Expect = 2e-27
Identities = 74/261 (28%), Positives = 136/261 (52%), Gaps = 13/261 (4%)
Query: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285
GR +N+DL+ K L + G L+ +L+ ++V+RY++FK V ++ GK+ +VP + +
Sbjct: 69 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 128
Query: 286 SKELTMVEKRMLMKFLTFCLEYEQH-PDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342
S + M EKR KFL F ++++ P ++ + S + + L ++ F H+
Sbjct: 129 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHA 188
Query: 343 IAMTSESSC---TTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
+A+ ++ +N K + + L R+G +P+L+PLYG GE+PQGF R+ A++GG
Sbjct: 189 LALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248
Query: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459
Y L V ++ E+G+ + G+ K I + SY+ + + Q+ R +
Sbjct: 249 YMLNKPVDDIIM--ENGKVVGVKSE-GEVARCKQLICDPSYIPDRV---RKAGQVIRIIC 302
Query: 460 ITDQSILKTDLDQQTSILIVP 480
I I T+ D + +I+P
Sbjct: 303 ILSHPIKNTN-DANSCQIIIP 322
Score = 50.1 bits (118), Expect = 7e-06
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 47
>gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens]
Length = 445
Score = 120 bits (300), Expect = 5e-27
Identities = 72/261 (27%), Positives = 136/261 (52%), Gaps = 13/261 (4%)
Query: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285
GR +N+DL+ K L + G L+ +L+ ++V+RY++FK ++ GK+ +VP + A+
Sbjct: 69 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 128
Query: 286 SKELTMVEKRMLMKFLTFCLEY-EQHPDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342
S + + EKR KFL + + E+ P ++ ++ + + K L ++ F H+
Sbjct: 129 SSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHA 188
Query: 343 IAMTSESSC---TTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
+A+ + +N K + + L R+G +P+L+PLYG GE+PQGF R+ A++GG
Sbjct: 189 LALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248
Query: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459
Y L ++ +V ++G+ + G+ K I + SY+ + + Q+ R +
Sbjct: 249 YMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIRVIC 302
Query: 460 ITDQSILKTDLDQQTSILIVP 480
I I T+ D + +I+P
Sbjct: 303 ILSHPIKNTN-DANSCQIIIP 322
Score = 51.2 bits (121), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47
>gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens]
Length = 400
Score = 76.3 bits (186), Expect = 9e-14
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 13/196 (6%)
Query: 291 MVEKRMLMKFLTFCLEY-EQHPDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHSIAMTS 347
+ EKR KFL + + E+ P ++ ++ + + K L ++ F H++A+
Sbjct: 89 LFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYR 148
Query: 348 ESSCTT---IDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRH 404
+ +N K + + L R+G +P+L+PLYG GE+PQGF R+ A++GG Y L
Sbjct: 149 TDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNK 208
Query: 405 KVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQS 464
++ +V ++G+ + G+ K I + SY+ + + Q+ R + I
Sbjct: 209 PIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIRVICILSHP 262
Query: 465 ILKTDLDQQTSILIVP 480
I T+ D + +I+P
Sbjct: 263 IKNTN-DANSCQIIIP 277
Score = 51.2 bits (121), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 47
>gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens]
Length = 610
Score = 38.1 bits (87), Expect = 0.026
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 2 ADNLPTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGL 55
A+ +P + DVV+IG+G AA +++G+RVL ++ + GG +F +GL
Sbjct: 61 ANQVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKNGL 114
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 105 ASQDMEDNVEEIGALQKNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTE 164
+S D E E ++ T E+ D LP++ Q S S + K + K +
Sbjct: 837 SSDDAERKQERETFSSAEGTVDKDTTIMELRDR-LPKKQQASA--STDGVDKLSGKEQSF 893
Query: 165 ISLEVTDVEESVEKEKYCGDKTC------MHTVSDKDGDKDESKSTVED 207
SLEV V E+ EK K+ KTC + +++K KD+S T ED
Sbjct: 894 TSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSED 942
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 105 ASQDMEDNVEEIGALQKNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTE 164
+S D E E ++ T E+ D LP++ Q S S + K + K +
Sbjct: 875 SSDDAERKQERETFSSAEGTVDKDTTIMELRDR-LPKKQQASA--STDGVDKLSGKEQSF 931
Query: 165 ISLEVTDVEESVEKEKYCGDKTC------MHTVSDKDGDKDESKSTVED 207
SLEV V E+ EK K+ KTC + +++K KD+S T ED
Sbjct: 932 TSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSED 980
>gi|157276588 basonuclin 1 [Homo sapiens]
Length = 994
Score = 33.1 bits (74), Expect = 0.83
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 134 VLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEKYCGDKTCMHTVSD 193
+L S++PE+ + D +P K ++KS I +E VE + EK H +S
Sbjct: 513 LLSSSIPEQLISNEMPFDALPKKKSRKSSMPIKIEKEAVEIANEKR---------HNLSS 563
Query: 194 KDGDKDESKSTVEDKADEPIRNRITYSQIVKEG 226
+ + S E +A P +R++ Q V+ G
Sbjct: 564 DEDMPLQVVSEDEQEACSPQSHRVSEEQHVQSG 596
>gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens]
Length = 1158
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 49 SFSFSGLLSWLKEYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQD 108
SFS +GLLS L Q++ + ++S D H E L K+ + + Y ++
Sbjct: 812 SFSKNGLLSRLLRQNQDSYLADDS-----DRSHRNNEMALLESKNLCMVPKKRKLY-TEP 865
Query: 109 MEDNVEEIGALQKNPSLGVSNTFT--EVLDSALPEESQLSYFNSD---EMPAKHTQKSDT 163
+E+ +++ KN + +N + EVL +L + +L + +D + PA H S++
Sbjct: 866 LENPFKKM----KNNIVDAANNHSAPEVLYGSLLNQEELKFSRNDLEFKYPAGHGSASES 921
Query: 164 EISLEVTDVEESVEKEKYCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIV 223
E + + ++ + C+ +S ++V D + +N +T S+
Sbjct: 922 EHRSWARESKSFNVLKQLLLSENCVRDLS------PHRSNSVADSKKKGHKNNVTNSK-- 973
Query: 224 KEGRRFNIDLVSKLLYS 240
F+I ++ L+YS
Sbjct: 974 ---PEFSISSLNGLMYS 987
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 139 LPEESQLSYFNSDEMPAKHTQKSDTEISLE-----VTDVEESVEKEKYCGDKTCMHTVSD 193
LPE+++ + D+ +KH +KSD E S E D E+S+ ++ ++ +H +
Sbjct: 1238 LPEKAEKKHAAEDKAKSKHKEKSDKEHSKERKSSRSADAEKSLLEKL---EEEALHEYRE 1294
Query: 194 KDGDK--DESKSTVEDKADEP 212
DK + S + D+ EP
Sbjct: 1295 DSNDKISEVSSDSFTDRGQEP 1315
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 32.0 bits (71), Expect = 1.9
Identities = 32/154 (20%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 63 QQNNDIGEESTVVWQDLIHETE-EAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQK 121
++++D+ + + E E +++ + + E + E ++ED ++E+ L++
Sbjct: 2303 EEDHDVTQTEVADGDIMDGEAETDSVVIAGQPEVLSSQEM--QVENELEDLIDEL--LER 2358
Query: 122 NPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKS----DTEISLEVTDVEESVE 177
+ G S T ++ + +ESQ DE P+ +Q S + E S+ + D E+
Sbjct: 2359 D---GGSGNSTIIVSRSGEDESQEDVL-MDEAPSNLSQASTLQANREDSMNILDPED--- 2411
Query: 178 KEKYCGDKTCMHTVSDKDGDKDESKSTVEDKADE 211
+E++ ++ + D+D +DE + ED+ D+
Sbjct: 2412 EEEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDD 2445
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 31.6 bits (70), Expect = 2.4
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 91 KKDETIQHTEAFCYASQDMEDNVEEIGALQKNPSLGVSNTFTEVLDSALPEESQLSYFNS 150
++++ QHT++ A+ +++ E + L+ + S+ E + S+ + Q +
Sbjct: 2375 QRNDRDQHTDSTQSANSSPDEDTE-VKTLKLSGMSNRSSIINEHMGSSSRDRRQKGKKSC 2433
Query: 151 DE-MPAKHTQKSDTEISLEVTDVEESVEKE--------KYCGDKTCMHTVSDKDGDK 198
E KH+ KS E T E +++ E +Y G + C + SDK GDK
Sbjct: 2434 KETFKEKHSSKSFLEPGQVTTGEEGNLKPEFMDEVLTPEYMGQRPCNNVSSDKIGDK 2490
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 129 NTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLE-VTDVEESVEKEKYCGDKTC 187
N + E + LP QL+Y + + K SD E +E + D EE ++E+Y D
Sbjct: 129 NDYRENVFKLLP---QLTYLDGYDRDDKEAPDSDAEGYVEGLDDEEEDEDEEEYDEDAQV 185
Query: 188 MHTVSDKDGDKDESKSTVEDKADE 211
+ D+D +++ + V + +E
Sbjct: 186 VEDEEDEDEEEEGEEEDVSGEEEE 209
>gi|158187521 A-kinase anchor protein 5 [Homo sapiens]
Length = 427
Score = 30.8 bits (68), Expect = 4.1
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 84 EEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQKNPSLGVSNTFTEVLDSALPEES 143
EE T+++K + +Q +A + + + + + P++ E +S L
Sbjct: 231 EEIETIKEKQD-VQPQQASPLETSETDHQQPVLSDVPPLPAIPDQQIVEEASNSTLESAP 289
Query: 144 QLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEK 180
+ S E+ A+ T+ DTE+S E E + +EK
Sbjct: 290 NGKDYESTEIVAEETKPKDTELSQESDFKENGITEEK 326
>gi|31542509 ADP-dependent glucokinase [Homo sapiens]
Length = 496
Score = 30.8 bits (68), Expect = 4.1
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 508 VHLTCSSSKTAREDLESVVKKLFTPYTETEINEEELTKPRLLWALYFNMRDSSG--ISRS 565
VHL +S T RE + S+V ++F T +NE+E L F + +SG S S
Sbjct: 294 VHLELASM-TNRELMSSIVHQVFPAVTSLGLNEQE---------LLFLTQSASGPHSSLS 343
Query: 566 SYNGLP 571
S+NG+P
Sbjct: 344 SWNGVP 349
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 30.8 bits (68), Expect = 4.1
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 159 QKSDTEISLEVTDVEESVEKEKYCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRIT 218
+KS E +D EE V + + K+ SD D D ++ ++V E I
Sbjct: 2480 RKSSPSKENESSDSEEEVSRPR----KSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIE 2535
Query: 219 YSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIK-----------SDVSRY-------VEFK 260
++ + SQG+L+ L++K S + +Y V K
Sbjct: 2536 FANV-----------------SQGILLLLMLKQHLKNLCGFSDSKIQKYSPSESAKVYDK 2578
Query: 261 NVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQ-HPDEYQAFRQ 319
+ R + + R+D+ NSK V++ ++ ++L F L E PDE + +
Sbjct: 2579 AINRKTGVHFHPKQTLDFLRSDMANSKITEEVKRSIVKQYLDFKLLMEHLDPDEEEEEGE 2638
Query: 320 CSFSEYLKTKKLT 332
S S + K +T
Sbjct: 2639 VSASTNARNKAIT 2651
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 30.8 bits (68), Expect = 4.1
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 159 QKSDTEISLEVTDVEESVEKEKYCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRIT 218
+KS E +D EE V + + K+ SD D D ++ ++V E I
Sbjct: 2480 RKSSPSKENESSDSEEEVSRPR----KSRKRVDSDSDSDSEDDINSVMKCLPENSAPLIE 2535
Query: 219 YSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIK-----------SDVSRY-------VEFK 260
++ + SQG+L+ L++K S + +Y V K
Sbjct: 2536 FANV-----------------SQGILLLLMLKQHLKNLCGFSDSKIQKYSPSESAKVYDK 2578
Query: 261 NVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQ-HPDEYQAFRQ 319
+ R + + R+D+ NSK V++ ++ ++L F L E PDE + +
Sbjct: 2579 AINRKTGVHFHPKQTLDFLRSDMANSKITEEVKRSIVKQYLDFKLLMEHLDPDEEEEEGE 2638
Query: 320 CSFSEYLKTKKLT 332
S S + K +T
Sbjct: 2639 VSASTNARNKAIT 2651
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 30.8 bits (68), Expect = 4.1
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 62 YQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDMEDNVEEIGALQK 121
+QQ++ + S+ +DLI + E +++ +D+T+ +T F + + EE L
Sbjct: 2652 HQQSSVDSQISSKENKDLISDATEKVSIAAEDDTLDNT--FSEELEKQQQFTEEEDNLYA 2709
Query: 122 NPSLGVSNTFTEVLDSALPEESQL-----SYFNSDEMPAKHTQK----SDTEISLEVTDV 172
S T +LD E++QL S N ++ + +K +D+ + + V D
Sbjct: 2710 EAS---EKLCTPLLDLLTREKNQLEAQLKSSLNEEKKSKQQLEKISLLTDSLLKVFVKDT 2766
Query: 173 EESVEKEKYCGDKTCMHTVSDKDGDKDESKSTVED 207
+++ K D+ + + GD D+ K T +D
Sbjct: 2767 VNQLQQIKKTRDEKIQLSNQELLGD-DQKKVTPQD 2800
>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
Length = 699
Score = 30.4 bits (67), Expect = 5.4
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 562 ISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEEFCPPPPNPEDI-IFDG 620
+ + Y P ++Y + D + + + +++ T IF T P P+ + I D
Sbjct: 156 VQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDS 215
Query: 621 DDKQPEAPGTNNVVMAKLESSEESKNLESPEKHL 654
D+ P ++N + A E +EE N + ++HL
Sbjct: 216 TDRIPATSTSSNTISAGWEPNEE--NEDERDRHL 247
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 30.4 bits (67), Expect = 5.4
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 9/177 (5%)
Query: 54 GLLSWLKEYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQD---ME 110
GL+ W YQ + D + QD + +R ++E + T A A D ++
Sbjct: 160 GLMYW---YQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNE-LAETLALLKAQIDPVLLK 215
Query: 111 DNVEEIGALQKNPSLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVT 170
++ ++ + +++PSL T E E+ + S+E P +S + LE T
Sbjct: 216 NSSQQDNSSRESPSLEDEETKKEEETPKQEEQKESEKMKSEEQPMDLENRSTANV-LEET 274
Query: 171 DVEESVEKEKYCGDKTCMHTVSDKDGDKDESKSTVEDKADEPIRNRITYSQIVKEGR 227
V++ E EK K + +K ++E K +++++D N VKE R
Sbjct: 275 TVKKEKEDEKEL-VKLPVIVKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECR 330
Score = 30.4 bits (67), Expect = 5.4
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 135 LDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEKYCGDKTCMHTVSDK 194
L S+ EES LS + D+ AK +++S + + E+ E+E+ K +
Sbjct: 1244 LSSSESEESYLSKNSEDDELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRLHRI 1303
Query: 195 DGDKDESKSTVEDKADEPIRN 215
+ D++ES A++P R+
Sbjct: 1304 ETDEEESCDNAHGDANQPARD 1324
>gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]
Length = 2527
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 61 EYQQNNDIGEESTVVWQDLIHETEEAITLRKKDETIQHTEAFCYASQDM 109
E Q+N+D GEE + W + + +A+T +K++ +Q EA C+A ++
Sbjct: 334 ENQENDDEGEEDKLFWLEACY---KALTWHRKNKHVQ--EAACWALNNL 377
>gi|238550202 tubby like protein 3 isoform 2 [Homo sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 5.4
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 508 VHLTCSSSKTAREDLESVVKKLFTPYTETEINEEELTKPRLLWALYFNMRDSSGISRSSY 567
VH SS ED E+ V P + + + ++++ ++ F+ ++ GIS+S+
Sbjct: 98 VHAPSVSSSVVEEDAENTVDTASKPGLQERLQKHDISE-----SVNFD-EETDGISQSAC 151
Query: 568 NGLPSNVYVCSGPDCGL-GNEHAVKQAETLFQEIFPTEEFCPPP 610
P++ + D G G+ A + A+ L +I E+F P
Sbjct: 152 LERPNSASSQNSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSP 195
>gi|21536436 tubby like protein 3 isoform 1 [Homo sapiens]
Length = 442
Score = 30.4 bits (67), Expect = 5.4
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 508 VHLTCSSSKTAREDLESVVKKLFTPYTETEINEEELTKPRLLWALYFNMRDSSGISRSSY 567
VH SS ED E+ V P + + + ++++ ++ F+ ++ GIS+S+
Sbjct: 98 VHAPSVSSSVVEEDAENTVDTASKPGLQERLQKHDISE-----SVNFD-EETDGISQSAC 151
Query: 568 NGLPSNVYVCSGPDCGL-GNEHAVKQAETLFQEIFPTEEFCPPP 610
P++ + D G G+ A + A+ L +I E+F P
Sbjct: 152 LERPNSASSQNSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSP 195
>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
Length = 1069
Score = 30.4 bits (67), Expect = 5.4
Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 124 SLGVSNTFTEVLDSALPEESQLSYFNSDEMPAKHTQKSDTEISLEVTDVEESVEKEKYCG 183
S+G + ++ + + E+ L DE P+ + D + L++ + +K
Sbjct: 6 SVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELA 65
Query: 184 DKTCMHTVSDKDGDKD-ESKSTVEDKADEPIRNRITYSQIV 223
D + D+ G+K+ +S ++ + D P+ N+++ S +
Sbjct: 66 DVLMDPPMDDQPGEKELVKRSQLDGEGDGPLSNQLSASSTI 106
>gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens]
Length = 633
Score = 30.4 bits (67), Expect = 5.4
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 610 PPNPEDIIFDGDDKQPEAPGTNNVVMAKL-ESSEESKNLESPEK 652
PP+P D+I D++QP +P N + L E+S E+ SPE+
Sbjct: 98 PPSP-DVIVLSDNEQPSSPRVNGLTTVALKETSTEALMKSSPEE 140
>gi|39932589 Rho GTPase activating protein 18 [Homo sapiens]
Length = 663
Score = 30.4 bits (67), Expect = 5.4
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 58 WLKEYQQNNDIGE-----ESTVVWQDLIHETEEAI----------TLRKKDETIQHTEAF 102
WLKE +N GE + ++V+ + T+ A TLRKK++ Q +
Sbjct: 113 WLKEAGLSNLFGESAGDPQESIVFLSTLTRTQAAAVQKRVETVSQTLRKKNKQYQIPDVR 172
Query: 103 CYASQDMEDNVEEIGALQKNPSLGVSNTFTEVLDSA--LPEESQLSYFNSDEMPAKHTQK 160
+Q E G + N + D A L E +L +P + T
Sbjct: 173 DIFAQQRESKETAPGGTESQSLRTNENKYQGRDDEASNLVGEEKL-------IPPEETPA 225
Query: 161 SDTEISLEVTDVEESVEKEKYCGDK 185
+T+I+LEV+ E+++ +++ +K
Sbjct: 226 PETDINLEVSFAEQALNQKESSKEK 250
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 30.4 bits (67), Expect = 5.4
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 557 RDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEEFCPPPPNPEDI 616
R SG R Y GL V SG + + ++T ++ PPPP ED
Sbjct: 201 RSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGPKV---TYIPPPPPEDEDS 257
Query: 617 IF 618
IF
Sbjct: 258 IF 259
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 30.4 bits (67), Expect = 5.4
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 557 RDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEEFCPPPPNPEDI 616
R SG R Y GL V SG + + ++T ++ PPPP ED
Sbjct: 201 RSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGPKV---TYIPPPPPEDEDS 257
Query: 617 IF 618
IF
Sbjct: 258 IF 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,184,573
Number of Sequences: 37866
Number of extensions: 1238667
Number of successful extensions: 3834
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3791
Number of HSP's gapped (non-prelim): 67
length of query: 656
length of database: 18,247,518
effective HSP length: 109
effective length of query: 547
effective length of database: 14,120,124
effective search space: 7723707828
effective search space used: 7723707828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.