CD44 30948

Name: CD44	Sequence: fasta or formatted (699aa)		NCBI GI: 48255937
Description: CD44 antigen isoform 2 precursor		Referenced in: Extracellular Matrix
Other entries for this name: alt prot [742aa] CD44 antigen isoform 1 precursor alt prot [493aa] CD44 antigen isoform 3 precursor alt prot [361aa] CD44 antigen isoform 4 precursor alt prot [139aa] CD44 antigen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 38 3 C cysteine 1.3 9 1 D aspartate 6.4 45 3 E glutamate 6.7 47 4 F phenylalanine 3.0 21 2 G glycine 7.2 50 2 H histidine 4.6 32 2 I isoleucine 4.9 34 2 K lysine 2.6 18 3 L leucine 4.9 34 2 M methionine 1.7 12 1 N asparagine 5.7 40 2 P proline 6.2 43 2 Q glutamine 3.6 25 2 R arginine 4.7 33 3 S serine 11.9 83 3 T threonine 11.6 81 3 V valine 4.0 28 2 W tryptophan 1.7 12 2 Y tyrosine 2.0 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CD44 antigen isoform 2 precursor CD44 0.985 CD44 antigen isoform 1 precursor CD44 0.364 CD44 antigen isoform 3 precursor CD44 0.311 CD44 antigen isoform 4 precursor CD44 0.098 CD44 antigen isoform 5 precursor LYVE1 0.037 lymphatic vessel endothelial hyaluronan receptor 1 [... TNFAIP6 0.027 tumor necrosis factor, alpha-induced protein 6 precu... DSPP 0.026 dentin sialophosphoprotein preproprotein MUC4 0.024 mucin 4 isoform a LOC100130716 0.022 PREDICTED: similar to mucin 11 MUC21 0.022 mucin 21 STAB1 0.019 stabilin 1 precursor FLG 0.019 filaggrin MUC12 0.018 PREDICTED: mucin 12 LOC100130716 0.018 PREDICTED: similar to Mucin-12 MUC5AC 0.017 mucin 5AC LOC100294249 0.017 PREDICTED: hypothetical protein XP_002344067 MUC12 0.016 PREDICTED: mucin 12, cell surface associated LOC729792 0.016 PREDICTED: hypothetical protein LOC729792 0.016 PREDICTED: hypothetical protein LOC729792 0.016 PREDICTED: hypothetical protein LOC100294501 0.016 PREDICTED: hypothetical protein LOC100294238 0.016 PREDICTED: hypothetical protein LOC100294204 0.016 PREDICTED: hypothetical protein LOC100294136 0.016 PREDICTED: hypothetical protein LOC100294091 0.016 PREDICTED: hypothetical protein LOC730401 0.016 PREDICTED: hypothetical protein FLG2 0.015 filaggrin family member 2 BCAN 0.015 brevican isoform 2 BCAN 0.015 brevican isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.