Guide to the Human Genome
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Name: GATAD2A Sequence: fasta or formatted (633aa) NCBI GI: 164519146
Description:

GATA zinc finger domain containing 2A

Referenced in:

DNA Methylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         63           3
 C cysteine            0.9          6           1
 D aspartate           2.4         15           2
 E glutamate           6.5         41           2
 F phenylalanine       1.1          7           1
 G glycine             5.8         37           2
 H histidine           1.3          8           1
 I isoleucine          3.2         20           2
 K lysine              6.0         38           2
 L leucine             9.2         58           3
 M methionine          2.7         17           1
 N asparagine          2.7         17           2
 P proline             8.8         56           3
 Q glutamine           6.8         43           2
 R arginine            7.0         44           2
 S serine             10.4         66           3
 T threonine           7.9         50           2
 V valine              6.3         40           2
 W tryptophan          0.6          4           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GATA zinc finger domain containing 2A 
GATAD2B               0.291   GATA zinc finger domain containing 2B 
CREBBP                0.019   CREB binding protein isoform b 
CREBBP                0.019   CREB binding protein isoform a 
BAT2D1                0.017   HBxAg transactivated protein 2 
TSC22D1               0.016   TSC22 domain family, member 1 isoform 1 
OBSCN                 0.015   obscurin, cytoskeletal calmodulin and titin-interact...
KDM6B                 0.015   lysine (K)-specific demethylase 6B 
POM121                0.014   nuclear pore membrane protein 121 
SRRM2                 0.013   splicing coactivator subunit SRm300 
SYN1                  0.013   synapsin I isoform Ia 
PCLO                  0.013   piccolo isoform 2 
PCLO                  0.013   piccolo isoform 1 
TBL3                  0.013   transducin beta-like 3 
SRCAP                 0.012   Snf2-related CBP activator protein 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
SYN1                  0.012   synapsin I isoform Ib 
MUC2                  0.012   mucin 2 precursor 
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform c ...
FLJ10404              0.012   hypothetical protein LOC54540 
ENAH                  0.012   enabled homolog isoform a 
ENAH                  0.012   enabled homolog isoform b 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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