| Name: CHM | Sequence: fasta or formatted (110aa) | NCBI GI: 224028271 | |
|
Description: choroideremia isoform b
|
Referenced in: Prenylation and Related Modifications
| ||
Other entries for this name:
alt prot [653aa] choroideremia isoform a | |||
|
Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.3 8 3 C cysteine 1.8 2 1 D aspartate 6.4 7 1 E glutamate 7.3 8 2 F phenylalanine 3.6 4 1 G glycine 5.5 6 2 H histidine 1.8 2 1 I isoleucine 7.3 8 2 K lysine 2.7 3 1 L leucine 10.0 11 3 M methionine 0.9 1 1 N asparagine 2.7 3 1 P proline 2.7 3 1 Q glutamine 3.6 4 1 R arginine 5.5 6 2 S serine 13.6 15 1 T threonine 3.6 4 1 V valine 7.3 8 1 W tryptophan 2.7 3 1 Y tyrosine 3.6 4 2 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 choroideremia isoform b CHM 0.954 choroideremia isoform a CHML 0.751 choroideremia-like Rab escort protein 2 GDI2 0.137 GDP dissociation inhibitor 2 isoform 2 GDI2 0.137 GDP dissociation inhibitor 2 isoform 1 GDI1 0.132 GDP dissociation inhibitor 1 RETSAT 0.066 all-trans-13,14-dihydroretinol saturase LOC100293706 0.025 PREDICTED: similar to hCG1797215 LOC100287210 0.025 PREDICTED: similar to hCG1797215 LOC100287210 0.025 PREDICTED: hypothetical protein XP_002342849 LOC100287210 0.025 PREDICTED: similar to hCG1797215 SQLE 0.020 squalene epoxidase RPAP2 0.015 RNA polymerase II associated protein 2 LRRCC1 0.015 sodium channel associated protein 2 isoform b [Homo... LRRCC1 0.015 sodium channel associated protein 2 isoform a [Homo... TGS1 0.010 trimethylguanosine synthase homolog PIK3CB 0.010 catalytic phosphatidylinositol 3-kinase beta BTBD2 0.010 BTB (POZ) domain containing 2 MORN3 0.010 MORN repeat containing 3 MTO1 0.010 mitochondrial translation optimization 1 homolog is... MTO1 0.010 mitochondrial translation optimization 1 homolog iso... MTO1 0.010 mitochondrial translation optimization 1 homolog iso... MAOA 0.005 monoamine oxidase A TIMM44 0.005 translocase of inner mitochondrial membrane 44 [Homo...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
