Guide to the Human Genome
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Name: GDI1 Sequence: fasta or formatted (447aa) NCBI GI: 4503971
Description:

GDP dissociation inhibitor 1

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         23           2
 C cysteine            2.5         11           1
 D aspartate           7.2         32           2
 E glutamate           7.4         33           2
 F phenylalanine       4.3         19           1
 G glycine             6.9         31           2
 H histidine           1.1          5           1
 I isoleucine          6.7         30           3
 K lysine              6.5         29           2
 L leucine             8.1         36           2
 M methionine          3.1         14           1
 N asparagine          4.3         19           1
 P proline             4.7         21           2
 Q glutamine           3.6         16           1
 R arginine            4.7         21           2
 S serine              5.6         25           3
 T threonine           5.4         24           2
 V valine              7.2         32           2
 W tryptophan          0.2          1           1
 Y tyrosine            5.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDP dissociation inhibitor 1 
GDI2                  0.880   GDP dissociation inhibitor 2 isoform 1 
GDI2                  0.763   GDP dissociation inhibitor 2 isoform 2 
CHML                  0.109   choroideremia-like Rab escort protein 2 
CHM                   0.096   choroideremia isoform a 
CHM                   0.029   choroideremia isoform b 
MYCN                  0.010   v-myc myelocytomatosis viral related oncogene, neuro...
EHMT2                 0.008   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.008   euchromatic histone-lysine N-methyltransferase 2 is...
DNAJC8                0.007   DnaJ (Hsp40) homolog, subfamily C, member 8 
RETSAT                0.006   all-trans-13,14-dihydroretinol saturase 
LOC100293553          0.005   PREDICTED: similar to L-myc-2 protein, partial [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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