Guide to the Human Genome
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Name: GDI2 Sequence: fasta or formatted (445aa) NCBI GI: 6598323
Description:

GDP dissociation inhibitor 2 isoform 1

Referenced in:

Rab

Other entries for this name:
alt prot [400aa] GDP dissociation inhibitor 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         19           2
 C cysteine            1.8          8           1
 D aspartate           6.3         28           2
 E glutamate           7.6         34           2
 F phenylalanine       4.0         18           1
 G glycine             7.0         31           2
 H histidine           1.1          5           1
 I isoleucine          8.3         37           3
 K lysine              8.3         37           2
 L leucine             8.1         36           2
 M methionine          2.7         12           1
 N asparagine          3.8         17           1
 P proline             4.7         21           2
 Q glutamine           2.9         13           1
 R arginine            4.9         22           2
 S serine              5.8         26           2
 T threonine           5.6         25           2
 V valine              6.5         29           1
 W tryptophan          0.2          1           1
 Y tyrosine            5.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDP dissociation inhibitor 2 isoform 1 
GDI1                  0.891   GDP dissociation inhibitor 1 
GDI2                  0.877   GDP dissociation inhibitor 2 isoform 2 
CHML                  0.109   choroideremia-like Rab escort protein 2 
CHM                   0.097   choroideremia isoform a 
CHM                   0.031   choroideremia isoform b 
MYCN                  0.008   v-myc myelocytomatosis viral related oncogene, neuro...
PEX6                  0.007   peroxisomal biogenesis factor 6 
MBP                   0.006   Golli-mbp isoform 1 
MBP                   0.006   myelin basic protein isoform 3 
RETSAT                0.006   all-trans-13,14-dihydroretinol saturase 
IFNGR1                0.005   interferon gamma receptor 1 precursor 
MOV10L1               0.005   MOV10-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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