Guide to the Human Genome
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Name: SOCS6 Sequence: fasta or formatted (535aa) NCBI GI: 21450785
Description:

suppressor of cytokine signaling 6

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         25           1
 C cysteine            1.5          8           1
 D aspartate           6.4         34           2
 E glutamate           5.6         30           2
 F phenylalanine       3.4         18           1
 G glycine             6.4         34           2
 H histidine           3.2         17           2
 I isoleucine          3.4         18           1
 K lysine              5.6         30           2
 L leucine             9.0         48           2
 M methionine          2.6         14           1
 N asparagine          3.6         19           2
 P proline             6.7         36           2
 Q glutamine           4.7         25           2
 R arginine            6.0         32           2
 S serine             12.5         67           4
 T threonine           4.5         24           2
 V valine              6.7         36           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppressor of cytokine signaling 6 
SOCS7                 0.139   suppressor of cytokine signaling 7 
SOCS5                 0.073   suppressor of cytokine signaling 5 
SOCS5                 0.073   suppressor of cytokine signaling 5 
SOCS2                 0.068   suppressor of cytokine signaling-2 
SOCS4                 0.067   suppressor of cytokine signaling 4 
SOCS4                 0.067   suppressor of cytokine signaling 4 
CISH                  0.056   cytokine-inducible SH2-containing protein isoform 1...
CISH                  0.056   cytokine-inducible SH2-containing protein isoform 2 ...
SOCS3                 0.038   suppressor of cytokine signaling 3 
PIK3R3                0.032   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
PIK3R3                0.032   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
PIK3R2                0.031   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
PIK3R1                0.029   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.028   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.028   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
SOCS1                 0.026   suppressor of cytokine signaling 1 
ABL2                  0.024   arg tyrosine kinase isoform c 
ABL2                  0.024   arg tyrosine kinase isoform b 
ABL2                  0.024   arg tyrosine kinase isoform e 
ABL2                  0.024   arg tyrosine kinase isoform d 
ABL2                  0.024   arg tyrosine kinase isoform a 
DAPP1                 0.024   dual adaptor of phosphotyrosine and 3-phosphoinosit...
VAV1                  0.022   vav 1 guanine nucleotide exchange factor 
ABL1                  0.020   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.020   c-abl oncogene 1, receptor tyrosine kinase isoform b...
PLCG2                 0.018   phospholipase C, gamma 2 
CSK                   0.017   c-src tyrosine kinase 
CSK                   0.017   c-src tyrosine kinase 
MATK                  0.017   megakaryocyte-associated tyrosine kinase isoform c [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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