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Search of human proteins with 53829379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53829379 plasminogen activator, urokinase receptor isoform 2
precursor [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53829379 plasminogen activator, urokinase receptor isoform 2 ... 615 e-176
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 550 e-157
gi|53829381 plasminogen activator, urokinase receptor isoform 3 ... 421 e-118
gi|93004088 GPI-anchored metastasis-associated protein homolog [... 46 3e-05
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 36 0.043
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 36 0.043
gi|94421024 CD83 antigen isoform b [Homo sapiens] 34 0.13
gi|4757946 CD83 antigen isoform a [Homo sapiens] 34 0.13
gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens] 34 0.13
gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens] 34 0.13
gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens] 33 0.28
gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens] 33 0.28
gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens] 33 0.28
gi|189491748 ataxin 1 [Homo sapiens] 31 1.4
gi|51479158 ataxin 1 [Homo sapiens] 31 1.4
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 31 1.4
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 31 1.4
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 31 1.4
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 31 1.4
gi|150010661 SEC14-like 5 [Homo sapiens] 30 1.8
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 30 1.8
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 30 2.4
gi|24430141 fibrillin 1 precursor [Homo sapiens] 29 4.0
gi|75709184 contactin 3 [Homo sapiens] 29 4.0
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 29 4.0
gi|194328809 latent transforming growth factor beta binding prot... 28 6.9
gi|18497288 latent transforming growth factor beta binding prote... 28 6.9
gi|93004074 zinc finger protein 215 [Homo sapiens] 28 6.9
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 28 9.0
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 28 9.0
>gi|53829379 plasminogen activator, urokinase receptor isoform 2
precursor [Homo sapiens]
Length = 281
Score = 615 bits (1587), Expect = e-176
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
Sbjct: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
Query: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
Sbjct: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
Query: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
Sbjct: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
Query: 181 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
Sbjct: 181 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
Query: 241 MNQCLVATGTHERSLWGSWLPCKSTTALRPPCCEEAQATHV 281
MNQCLVATGTHERSLWGSWLPCKSTTALRPPCCEEAQATHV
Sbjct: 241 MNQCLVATGTHERSLWGSWLPCKSTTALRPPCCEEAQATHV 281
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 550 bits (1418), Expect = e-157
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
Sbjct: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
Query: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
Sbjct: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
Query: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
Sbjct: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
Query: 181 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
Sbjct: 181 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
Query: 241 MNQCLVATGTHE 252
MNQCLVATGTHE
Sbjct: 241 MNQCLVATGTHE 252
>gi|53829381 plasminogen activator, urokinase receptor isoform 3
precursor [Homo sapiens]
Length = 290
Score = 421 bits (1083), Expect = e-118
Identities = 206/252 (81%), Positives = 207/252 (82%), Gaps = 45/252 (17%)
Query: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
Sbjct: 1 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL 60
Query: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
Sbjct: 61 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC 120
Query: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEE
Sbjct: 121 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEE----------------------- 157
Query: 181 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
+LELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
Sbjct: 158 ----------------------VLELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 195
Query: 241 MNQCLVATGTHE 252
MNQCLVATGTHE
Sbjct: 196 MNQCLVATGTHE 207
>gi|93004088 GPI-anchored metastasis-associated protein homolog
[Homo sapiens]
Length = 346
Score = 46.2 bits (108), Expect = 3e-05
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 115 LECISC-GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLP 173
LEC SC +D C + ++++C +DV T + E + +RGCG
Sbjct: 31 LECYSCVQKADDGCSPNKMKTVKCAPG----VDVCTEAVGAVETIHGQFSLAVRGCG--S 84
Query: 174 GCPGSNG----FHNNDTFHFLKCCNTTKCNEGPILELENL---------PQNGRQCYSCK 220
G PG N H F L+ C +CN L L P NG +CYSC
Sbjct: 85 GLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLTSRALDPAGNESAYPPNGVECYSCV 144
Query: 221 GNSTHGCSSEETFLIDC 237
G S C ++ C
Sbjct: 145 GLSREACQGTSPPVVSC 161
Score = 29.3 bits (64), Expect = 4.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 215 QCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHE 252
+CYSC + GCS + + C ++ C A G E
Sbjct: 32 ECYSCVQKADDGCSPNKMKTVKCAPGVDVCTEAVGAVE 69
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 35.8 bits (81), Expect = 0.043
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 38 ECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGL-- 95
EC G + C+ I R WE+ E + C KT+R S R ++ S+ E+ L
Sbjct: 43 EC--GHNFCKACITRWWEDLER----DFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQA 96
Query: 96 --------DLCNQGNSGRAVTYSRSRYLECISCGSS-----------DMSCERGRHQSLQ 136
LC Q + ++ + C+ C S D + + + + +
Sbjct: 97 VKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQK 156
Query: 137 CRSPEEQCLDVVTHWIQEGEEGRPKDDRHL 166
C P EQ L +T + EE +P + + L
Sbjct: 157 CLEPLEQKLQEITR-CKSSEEKKPGELKRL 185
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 35.8 bits (81), Expect = 0.043
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 38 ECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGL-- 95
EC G + C+ I R WE+ E + C KT+R S R ++ S+ E+ L
Sbjct: 43 EC--GHNFCKACITRWWEDLER----DFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQA 96
Query: 96 --------DLCNQGNSGRAVTYSRSRYLECISCGSS-----------DMSCERGRHQSLQ 136
LC Q + ++ + C+ C S D + + + + +
Sbjct: 97 VKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQK 156
Query: 137 CRSPEEQCLDVVTHWIQEGEEGRPKDDRHL 166
C P EQ L +T + EE +P + + L
Sbjct: 157 CLEPLEQKLQEITR-CKSSEEKKPGELKRL 185
>gi|94421024 CD83 antigen isoform b [Homo sapiens]
Length = 204
Score = 34.3 bits (77), Expect = 0.13
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159
SR L +SC S ++ L C +P + + W++ EG E R
Sbjct: 2 SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
Query: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201
P++D HLRG Y G NG + N+ + LK NTT CN G
Sbjct: 62 TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
>gi|4757946 CD83 antigen isoform a [Homo sapiens]
Length = 205
Score = 34.3 bits (77), Expect = 0.13
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159
SR L +SC S ++ L C +P + + W++ EG E R
Sbjct: 2 SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
Query: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201
P++D HLRG Y G NG + N+ + LK NTT CN G
Sbjct: 62 TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
>gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens]
Length = 251
Score = 34.3 bits (77), Expect = 0.13
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 167 RGCGYLP--GCPGSNGFHNNDTFHFLKCCNTTKCNEGPILE--LENLPQ-------NGRQ 215
+GC P G SN + ++ C T KCN + L NL Q +G +
Sbjct: 75 KGCWTGPPAGQTQSNADALPPDYSVVRGCTTDKCNAHLMTHDALPNLSQAPDPPTLSGAE 134
Query: 216 CYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHERSLWGSW-LPCKSTTALRPPCCE 274
CY+C G C+ + + C C G R G++ +P T RP C
Sbjct: 135 CYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNG---RMTVGNFSVPVYIRTCHRPSCTT 191
Query: 275 E 275
E
Sbjct: 192 E 192
>gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens]
Length = 208
Score = 34.3 bits (77), Expect = 0.13
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 167 RGCGYLP--GCPGSNGFHNNDTFHFLKCCNTTKCNEGPILE--LENLPQ-------NGRQ 215
+GC P G SN + ++ C T KCN + L NL Q +G +
Sbjct: 32 KGCWTGPPAGQTQSNADALPPDYSVVRGCTTDKCNAHLMTHDALPNLSQAPDPPTLSGAE 91
Query: 216 CYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHERSLWGSW-LPCKSTTALRPPCCE 274
CY+C G C+ + + C C G R G++ +P T RP C
Sbjct: 92 CYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNG---RMTVGNFSVPVYIRTCHRPSCTT 148
Query: 275 E 275
E
Sbjct: 149 E 149
>gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 11 LLLHTCVPASWGLRCMQCKTNGD-C--RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
+LL T + L C C G C +++ C+ +D C + + +G+EL K C
Sbjct: 15 VLLCTLLGLGCPLHCEICTAAGSRCHGQMKTCSSDKDTCVLLVGKATSKGKELVHTYKGC 74
Query: 68 THSEKT-NRTLSYRTGLKITSLT-EVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDM 125
S+ + +S G K +T C D CN +T L C +C +S
Sbjct: 75 IRSQDCYSGVISTTMGPKDHMVTSSFCCQSDGCNSAFLSVPLTNLTENGLMCPACTASFR 134
Query: 126 SCERGRHQSLQCRSPEEQCLDVVTHWIQEG 155
++ C E C+ + H +Q G
Sbjct: 135 --DKCMGPMTHCTGKENHCVSLSGH-VQAG 161
>gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 11 LLLHTCVPASWGLRCMQCKTNGD-C--RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
+LL T + L C C G C +++ C+ +D C + + +G+EL K C
Sbjct: 15 VLLCTLLGLGCPLHCEICTAAGSRCHGQMKTCSSDKDTCVLLVGKATSKGKELVHTYKGC 74
Query: 68 THSEKT-NRTLSYRTGLKITSLT-EVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDM 125
S+ + +S G K +T C D CN +T L C +C +S
Sbjct: 75 IRSQDCYSGVISTTMGPKDHMVTSSFCCQSDGCNSAFLSVPLTNLTENGLMCPACTASFR 134
Query: 126 SCERGRHQSLQCRSPEEQCLDVVTHWIQEG 155
++ C E C+ + H +Q G
Sbjct: 135 --DKCMGPMTHCTGKENHCVSLSGH-VQAG 161
>gi|239746298 PREDICTED: similar to R28379_1 [Homo sapiens]
Length = 204
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 11 LLLHTCVPASWGLRCMQCKTNGD-C--RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
+LL T + L C C G C +++ C+ +D C + + +G+EL K C
Sbjct: 15 VLLCTLLGLGCPLHCEICTAAGSRCHGQMKTCSSDKDTCVLLVGKATSKGKELVHTYKGC 74
Query: 68 THSEKT-NRTLSYRTGLKITSLT-EVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDM 125
S+ + +S G K +T C D CN +T L C +C +S
Sbjct: 75 IRSQDCYSGVISTTMGPKDHMVTSSFCCQSDGCNSAFLSVPLTNLTENGLMCPACTASFR 134
Query: 126 SCERGRHQSLQCRSPEEQCLDVVTHWIQEG 155
++ C E C+ + H +Q G
Sbjct: 135 --DKCMGPMTHCTGKENHCVSLSGH-VQAG 161
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 30.8 bits (68), Expect = 1.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 131 RHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
+ +S +C P+++ + + +E P D+ + G +LPG PG G
Sbjct: 5 QERSNECLPPKKREIPATSRSSEEKAPTLPSDNHRVEGTAWLPGNPGGRG 54
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 30.8 bits (68), Expect = 1.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 131 RHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG 180
+ +S +C P+++ + + +E P D+ + G +LPG PG G
Sbjct: 5 QERSNECLPPKKREIPATSRSSEEKAPTLPSDNHRVEGTAWLPGNPGGRG 54
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 30.8 bits (68), Expect = 1.4
Identities = 50/202 (24%), Positives = 74/202 (36%), Gaps = 31/202 (15%)
Query: 32 GDCRVEECALGQDLCRTTIVRLWEE----GEELELVEKSCTHSEKTNRTLSYRTGLKITS 87
GD + EC C T +E E L+L+ C H+ KT + + +
Sbjct: 114 GDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQEEGKFWNDI-LRK 172
Query: 88 LTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDV 147
L CN G++ + + YL +C SS C +G S++ S E C +
Sbjct: 173 LQPCHSSCKTCN-GSATLCTSCPKGAYLLAQACVSS---CPQGTWPSVRSGSCEN-CTEA 227
Query: 148 VTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELE 207
I G + K C PG P H +C + KC EG E
Sbjct: 228 CA--ICSGADLCKK-------CQMQPGHPLF--------LHEGRCYS--KCPEGSYAEDG 268
Query: 208 NLPQNGRQCYSCKGNST--HGC 227
+ C +C+GN+T H C
Sbjct: 269 ICERCSSPCRTCEGNATNCHSC 290
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 30.8 bits (68), Expect = 1.4
Identities = 50/202 (24%), Positives = 74/202 (36%), Gaps = 31/202 (15%)
Query: 32 GDCRVEECALGQDLCRTTIVRLWEE----GEELELVEKSCTHSEKTNRTLSYRTGLKITS 87
GD + EC C T +E E L+L+ C H+ KT + + +
Sbjct: 114 GDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQEEGKFWNDI-LRK 172
Query: 88 LTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDV 147
L CN G++ + + YL +C SS C +G S++ S E C +
Sbjct: 173 LQPCHSSCKTCN-GSATLCTSCPKGAYLLAQACVSS---CPQGTWPSVRSGSCEN-CTEA 227
Query: 148 VTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELE 207
I G + K C PG P H +C + KC EG E
Sbjct: 228 CA--ICSGADLCKK-------CQMQPGHPLF--------LHEGRCYS--KCPEGSYAEDG 268
Query: 208 NLPQNGRQCYSCKGNST--HGC 227
+ C +C+GN+T H C
Sbjct: 269 ICERCSSPCRTCEGNATNCHSC 290
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 30.8 bits (68), Expect = 1.4
Identities = 50/202 (24%), Positives = 74/202 (36%), Gaps = 31/202 (15%)
Query: 32 GDCRVEECALGQDLCRTTIVRLWEE----GEELELVEKSCTHSEKTNRTLSYRTGLKITS 87
GD + EC C T +E E L+L+ C H+ KT + + +
Sbjct: 114 GDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQEEGKFWNDI-LRK 172
Query: 88 LTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDV 147
L CN G++ + + YL +C SS C +G S++ S E C +
Sbjct: 173 LQPCHSSCKTCN-GSATLCTSCPKGAYLLAQACVSS---CPQGTWPSVRSGSCEN-CTEA 227
Query: 148 VTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELE 207
I G + K C PG P H +C + KC EG E
Sbjct: 228 CA--ICSGADLCKK-------CQMQPGHPLF--------LHEGRCYS--KCPEGSYAEDG 268
Query: 208 NLPQNGRQCYSCKGNST--HGC 227
+ C +C+GN+T H C
Sbjct: 269 ICERCSSPCRTCEGNATNCHSC 290
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 30.8 bits (68), Expect = 1.4
Identities = 48/182 (26%), Positives = 61/182 (33%), Gaps = 32/182 (17%)
Query: 122 SSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPK---------DDRHLRGCGYL 172
+ D+ + +S +C QC + W EG P H +L
Sbjct: 74 NKDLQTRVRQLESCECHPASPQCWGLGRAW-PEGARWEPDACTACVCQDGAAHCGPQAHL 132
Query: 173 PGCPG--SNG--FHNNDTFHFLKCCNTTKCNEGPILELEN------LPQNGRQCYSCK-G 221
P C G NG + N +TF C T +C EG I + P+ G C CK G
Sbjct: 133 PHCRGCSQNGQTYGNGETFS-PDACTTCRCLEGTITCNQKPCPRGPCPEPGACCPHCKPG 191
Query: 222 NSTHGCSSEE--TFLIDCRGPMNQCLVATGTHER----SLWGSWLPCKSTTALRPPCCEE 275
G EE TFL N CL T R +L PC CC
Sbjct: 192 CDYEGQLYEEGVTFL----SSSNPCLQCTCLRSRVRCMALKCPPSPCPEPVLRPGHCCPT 247
Query: 276 AQ 277
Q
Sbjct: 248 CQ 249
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 30.4 bits (67), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 141 EEQCLDVVTHWIQEGEEGR-PKDDRHLR 167
+E CL + HW+QE +G+ PKD+ LR
Sbjct: 242 QESCLIQLRHWLQETHKGKIPKDEHILR 269
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 192 CCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP 240
CC++ + P+ E + L +G +S G S HG + C GP
Sbjct: 738 CCSSCPDSLSPLEEKQGLSPHGNVAFSKAGRSLHGDTEAPVNCSSCPGP 786
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 30.0 bits (66), Expect = 2.4
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 7 LPLLLLLHTCVPASWGLRCMQCKTNGDC-RVEECALGQDLCRTTIVRLWEEGEELELVEK 65
L L +L + A+ + C QC G C C C TT R+ E+L LV K
Sbjct: 7 LLLAAVLSLQLAAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTK 66
Query: 66 SC 67
C
Sbjct: 67 MC 68
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 29.3 bits (64), Expect = 4.0
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 96 DLCNQGN--SGRAVTYSRSRYLECISCGSSDMSCERGRHQ----SLQCRSPEEQCLDVVT 149
+LC +G + + +T + + + C C G+ + S +CR LD
Sbjct: 1006 ELCPRGPGFATKEITNGKPFFKDINECKMIPSLCTHGKCRNTIGSFKCRCDSGFALDSEE 1065
Query: 150 HWIQEGEEGRPKDDRHLRG-CGYLPG---CPGSNGFHNNDTFHFLK-CCNTTKCNEGPIL 204
+ +E R D RG C PG C G+ + F +K C + +C P+L
Sbjct: 1066 RNCTDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG--FMMMKNCMDIDECQRDPLL 1123
Query: 205 ELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQC 244
+ N Y C+ H S + ID +N+C
Sbjct: 1124 CRGGVCHNTEGSYRCECPPGHQLSPNISACID----INEC 1159
>gi|75709184 contactin 3 [Homo sapiens]
Length = 1028
Score = 29.3 bits (64), Expect = 4.0
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 82 GLKITSLTEVVCGLDLC---NQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCR 138
GLKI ++T+ G C NQ T+ I+ S+M G L C+
Sbjct: 463 GLKIANVTKADAGTYTCMAENQFGKANGTTHLVVTEPTRITLAPSNMDVSVGESVILPCQ 522
Query: 139 SPEEQCLDVVTHWIQEGE-EGRPKDDRHLRGCG 170
+ LD++ W G KD H G
Sbjct: 523 VQHDPLLDIIFTWYFNGALADFKKDGSHFEKVG 555
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 15 TCVPASWGLRCMQCKTNGDC-RVEECALGQDLCRTTIVRLWEEGEELELVEKSC 67
T A+ + C QC G C C C TT R+ E+L LV K C
Sbjct: 49 TRTSAAEAIWCHQCTGFGGCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVTKMC 102
>gi|194328809 latent transforming growth factor beta binding protein
3 isoform 1 [Homo sapiens]
Length = 1303
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 3 HPPLLPLLLLLHTC-VPASWGLRCMQCKTNGDCRVEE-CALGQ 43
HP L L C V +WG RC +C T+G +E C G+
Sbjct: 417 HPLTTRLTRQLCCCSVGKAWGARCQRCPTDGTAAFKEICPAGK 459
>gi|18497288 latent transforming growth factor beta binding protein
3 isoform 2 [Homo sapiens]
Length = 1256
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 3 HPPLLPLLLLLHTC-VPASWGLRCMQCKTNGDCRVEE-CALGQ 43
HP L L C V +WG RC +C T+G +E C G+
Sbjct: 417 HPLTTRLTRQLCCCSVGKAWGARCQRCPTDGTAAFKEICPAGK 459
>gi|93004074 zinc finger protein 215 [Homo sapiens]
Length = 517
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 70 SEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSS-DMSCE 128
+ +TN T + + + T CG +S + + + +C++CG S + S
Sbjct: 417 NRRTNLTKHQKLHAEAKACTSNKCGKAFSKSEDSNNPTLHFGNNFYQCVNCGKSFNRSSS 476
Query: 129 RGRHQSLQCRSPEEQC 144
RHQ + +C
Sbjct: 477 LIRHQMIHTGEKPFKC 492
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 9.0
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 6 LLPLLLLLHTCVPASWGLRCMQCKTNGDCR-VEECALGQDLCRTTIVRLWEEGEELELVE 64
LL LLLL C + L C C + C + ECA C I R G LV
Sbjct: 4 LLVLLLLAAVCAALAQALHCHVCCGHEHCESLVECAPTDKYC--VITRATSPGG--ILVM 59
Query: 65 KSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ-------GNSGRAVTYSRSRYLEC 117
KSC+ + + S L ++ C CN+ G+ G + L
Sbjct: 60 KSCSPTCPNSTVSSDSRALSVS-----CCQGSQCNRSAAAGLVGSPGTLWASIAASQLWA 114
Query: 118 ISCGSSDMSCERGR 131
+ G +D +RGR
Sbjct: 115 LLQGIADGMLQRGR 128
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 9.0
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 6 LLPLLLLLHTCVPASWGLRCMQCKTNGDCR-VEECALGQDLCRTTIVRLWEEGEELELVE 64
LL LLLL C + L C C + C + ECA C I R G LV
Sbjct: 4 LLVLLLLAAVCAALAQALHCHVCCGHEHCESLVECAPTDKYC--VITRATSPGG--ILVM 59
Query: 65 KSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ-------GNSGRAVTYSRSRYLEC 117
KSC+ + + S L ++ C CN+ G+ G + L
Sbjct: 60 KSCSPTCPNSTVSSDSRALSVS-----CCQGSQCNRSAAAGLVGSPGTLWASIAASQLWA 114
Query: 118 ISCGSSDMSCERGR 131
+ G +D +RGR
Sbjct: 115 LLQGIADGMLQRGR 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,898,815
Number of Sequences: 37866
Number of extensions: 698619
Number of successful extensions: 1761
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 46
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.