Guide to the Human Genome
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Name: LYPD5 Sequence: fasta or formatted (251aa) NCBI GI: 164698546
Description:

LY6/PLAUR domain containing 5 isoform A

Not currently referenced in the text

Other entries for this name:
alt prot {208aa} LY6/PLAUR domain containing 5 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         23           2
 C cysteine            7.2         18           2
 D aspartate           4.4         11           2
 E glutamate           2.4          6           1
 F phenylalanine       3.2          8           1
 G glycine             7.6         19           1
 H histidine           2.8          7           1
 I isoleucine          2.8          7           1
 K lysine              1.6          4           1
 L leucine            10.8         27           3
 M methionine          2.4          6           1
 N asparagine          2.4          6           1
 P proline             8.0         20           2
 Q glutamine           5.2         13           1
 R arginine            5.2         13           2
 S serine              7.2         18           1
 T threonine           8.8         22           2
 V valine              5.6         14           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LY6/PLAUR domain containing 5 isoform A 
LYPD5                 0.826   LY6/PLAUR domain containing 5 isoform B 
LYPD3                 0.113   GPI-anchored metastasis-associated protein homolog [...
LYPD4                 0.038   LY6/PLAUR domain containing 4 
PLAUR                 0.032   plasminogen activator, urokinase receptor isoform 1 p...
TEX101                0.024   testis expressed 101 isoform 1 
PLAUR                 0.020   plasminogen activator, urokinase receptor isoform 3 ...
TEX101                0.020   testis expressed 101 isoform 2 
ACVR2A                0.020   activin A receptor, type IIA precursor 
PLAUR                 0.018   plasminogen activator, urokinase receptor isoform 2 ...
OTOG                  0.018   PREDICTED: otogelin isoform 1 
OTOG                  0.018   PREDICTED: otogelin isoform 2 
OTOG                  0.018   PREDICTED: otogelin isoform 2 
OTOG                  0.018   PREDICTED: otogelin isoform 1 
OTOG                  0.018   PREDICTED: otogelin isoform 2 
OTOG                  0.018   PREDICTED: otogelin isoform 1 
SPACA4                0.018   sperm acrosomal membrane protein 14 
CD320                 0.010   8D6 antigen 
LYPD6                 0.010   LY6/PLAUR domain containing 6 
LYNX1                 0.010   secreted Ly6/uPAR related protein 2 isoform b 
LPA                   0.010   lipoprotein Lp(a) precursor 
LYNX1                 0.010   Ly-6 neurotoxin-like protein 1 isoform a 
GRN                   0.008   granulin precursor 
KRTAP4-8              0.008   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.008   PREDICTED: similar to keratin associated protein 4-...
TNK2                  0.008   tyrosine kinase, non-receptor, 2 isoform 1 
DYNC1H1               0.006   cytoplasmic dynein 1 heavy chain 1 
LOC100130522          0.006   hypothetical protein LOC100130522 isoform 2 
ACVRL1                0.006   activin A receptor type II-like 1 
ACVRL1                0.006   activin A receptor type II-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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