Guide to the Human Genome
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Name: LOC390940 Sequence: fasta or formatted (204aa) NCBI GI: 239746298
Description:

PREDICTED: similar to R28379_1

Not currently referenced in the text

Other entries for this name:
alt mRNA {204aa} PREDICTED: similar to R28379_1
alt mRNA {204aa} PREDICTED: similar to R28379_1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         11           2
 C cysteine            9.8         20           2
 D aspartate           2.9          6           1
 E glutamate           3.9          8           1
 F phenylalanine       4.4          9           1
 G glycine             8.8         18           1
 H histidine           4.9         10           2
 I isoleucine          2.5          5           1
 K lysine              5.4         11           1
 L leucine             9.3         19           2
 M methionine          4.4          9           1
 N asparagine          2.5          5           1
 P proline             4.9         10           1
 Q glutamine           2.0          4           1
 R arginine            3.9          8           2
 S serine              8.8         18           2
 T threonine           9.8         20           2
 V valine              5.4         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to R28379_1 
LOC390940             1.000   PREDICTED: similar to R28379_1 
LOC390940             1.000   PREDICTED: similar to R28379_1 
PLAUR                 0.053   plasminogen activator, urokinase receptor isoform 1 p...
LOC646627             0.048   phospholipase inhibitor 
CD177                 0.041   CD177 molecule 
PLAUR                 0.036   plasminogen activator, urokinase receptor isoform 3 ...
LYPD4                 0.031   LY6/PLAUR domain containing 4 
LY6D                  0.024   lymphocyte antigen 6 complex, locus D 
GLI2                  0.022   GLI-Kruppel family member GLI2 
LYNX1                 0.022   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.022   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.022   Ly-6 neurotoxin-like protein 1 isoform c 
LYPD3                 0.022   GPI-anchored metastasis-associated protein homolog [...
PLAUR                 0.019   plasminogen activator, urokinase receptor isoform 2 ...
GLI3                  0.019   GLI-Kruppel family member GLI3 
LYNX1                 0.017   secreted Ly6/uPAR related protein 2 isoform b 
TGFBR1                0.014   transforming growth factor, beta receptor I isoform 1...
TGFBR1                0.014   transforming growth factor, beta receptor I isoform...
FBN1                  0.012   fibrillin 1 precursor 
FBN2                  0.012   fibrillin 2 precursor 
GLI1                  0.012   GLI family zinc finger 1 isoform 2 
GLI1                  0.012   GLI family zinc finger 1 isoform 1 
MTF1                  0.012   metal-regulatory transcription factor 1 
ADAMTS14              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.012   ADAM metallopeptidase with thrombospondin type 1 mo...
KRTAP10-4             0.010   keratin associated protein 10-4 
LOC100292811          0.010   PREDICTED: similar to proprotein convertase subtili...
TCN1                  0.010   transcobalamin I precursor 
LY6E                  0.007   lymphocyte antigen 6 complex, locus E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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