Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288207 Sequence: fasta or formatted (190aa) NCBI GI: 239743642
Description:

PREDICTED: hypothetical protein XP_002342921

Not currently referenced in the text

Other entries for this name:
alt mRNA {190aa} PREDICTED: similar to RIKEN cDNA D730001G18
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         22           3
 C cysteine            6.8         13           2
 D aspartate           3.2          6           1
 E glutamate           1.6          3           1
 F phenylalanine       0.0          0           0
 G glycine             8.9         17           3
 H histidine           2.6          5           1
 I isoleucine          2.6          5           1
 K lysine              1.1          2           1
 L leucine            15.3         29           4
 M methionine          1.6          3           1
 N asparagine          1.1          2           1
 P proline             8.9         17           2
 Q glutamine           6.3         12           1
 R arginine            3.7          7           1
 S serine             10.0         19           2
 T threonine           5.3         10           1
 V valine              5.3         10           1
 W tryptophan          2.6          5           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342921 
LOC100288207          1.000   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100292543          0.992   PREDICTED: similar to RIKEN cDNA D730001G18 
LYNX1                 0.104   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.104   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.104   Ly-6 neurotoxin-like protein 1 isoform c 
LY6E                  0.093   lymphocyte antigen 6 complex, locus E 
LY6E                  0.093   lymphocyte antigen 6 complex, locus E 
LY6D                  0.093   lymphocyte antigen 6 complex, locus D 
LYPD2                 0.083   LY6/PLAUR domain containing 2 
LYNX1                 0.061   secreted Ly6/uPAR related protein 2 isoform b 
LY6H                  0.059   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.059   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.059   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LYNX1                 0.051   Ly-6 neurotoxin-like protein 1 isoform a 
PSCA                  0.048   prostate stem cell antigen preproprotein 
SLURP1                0.048   ARS component B precursor 
LOC100131696          0.032   PREDICTED: keratin associated protein 
LOC100288060          0.032   PREDICTED: hypothetical protein XP_002343557 
LOC100131696          0.027   PREDICTED: keratin associated protein 
KRTAP10-1             0.027   keratin associated protein 10-1 
PEAR1                 0.024   platelet endothelial aggregation receptor 1 
GPIHBP1               0.024   glycosylphosphatidylinositol anchored high density l...
SPEG                  0.021   SPEG complex locus 
CD59                  0.021   CD59 antigen preproprotein 
CD59                  0.021   CD59 antigen preproprotein 
CD59                  0.021   CD59 antigen preproprotein 
CD59                  0.021   CD59 antigen preproprotein 
CD59                  0.021   CD59 antigen preproprotein 
CD59                  0.021   CD59 antigen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press