Guide to the Human Genome
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Name: CD83 Sequence: fasta or formatted (204aa) NCBI GI: 94421024
Description:

CD83 antigen isoform b

Referenced in:

B cells

Other entries for this name:
alt prot [205aa] CD83 antigen isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         12           1
 C cysteine            3.4          7           1
 D aspartate           3.9          8           1
 E glutamate           6.4         13           2
 F phenylalanine       3.9          8           1
 G glycine             5.9         12           2
 H histidine           2.5          5           1
 I isoleucine          3.4          7           2
 K lysine              5.4         11           2
 L leucine            12.3         25           4
 M methionine          1.5          3           1
 N asparagine          2.9          6           1
 P proline             7.4         15           1
 Q glutamine           4.9         10           1
 R arginine            5.9         12           1
 S serine              6.4         13           1
 T threonine           7.4         15           2
 V valine              6.4         13           1
 W tryptophan          1.0          2           1
 Y tyrosine            3.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD83 antigen isoform b 
CD83                  0.990   CD83 antigen isoform a 
PLAUR                 0.023   plasminogen activator, urokinase receptor isoform 2 ...
PLAUR                 0.023   plasminogen activator, urokinase receptor isoform 1 p...
DSCAM                 0.023   Down syndrome cell adhesion molecule isoform CHD2-42...
CNTN3                 0.023   contactin 3 
SIRPA                 0.018   signal-regulatory protein alpha precursor 
SIRPA                 0.018   signal-regulatory protein alpha precursor 
SIRPA                 0.018   signal-regulatory protein alpha precursor 
FGFR2                 0.018   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR2                 0.018   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.018   fibroblast growth factor receptor 2 isoform 2 precu...
JAM2                  0.018   junctional adhesion molecule 2 precursor 
CXADR                 0.018   coxsackie virus and adenovirus receptor precursor [Ho...
SCN2B                 0.015   sodium channel, voltage-gated, type II, beta 
ROBO2                 0.015   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.015   roundabout, axon guidance receptor, homolog 2 isofor...
IGSF10                0.015   immunoglobulin superfamily, member 10 
BTN3A1                0.013   butyrophilin, subfamily 3, member A1 isoform b [Homo...
BTN3A1                0.013   butyrophilin, subfamily 3, member A1 isoform d [Hom...
BTN3A1                0.013   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.013   butyrophilin, subfamily 3, member A1 isoform a [Homo...
NEGR1                 0.013   neuronal growth regulator 1 
VPS41                 0.013   vacuolar protein sorting 41 isoform 2 
VPS41                 0.013   vacuolar protein sorting 41 isoform 1 
IGF1                  0.013   insulin-like growth factor 1 isoform 3 preproprotei...
CNTN1                 0.013   contactin 1 isoform 1 precursor 
CNTN1                 0.013   contactin 1 isoform 2 precursor 
MOG                   0.013   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.013   myelin oligodendrocyte glycoprotein isoform alpha4 p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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