Guide to the Human Genome
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Name: IPO8 Sequence: fasta or formatted (1037aa) NCBI GI: 53759103
Description:

importin 8

Referenced in:

Nucleus and Nucleolus
Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         65           3
 C cysteine            1.8         19           1
 D aspartate           5.8         60           3
 E glutamate           8.5         88           4
 F phenylalanine       4.1         42           2
 G glycine             3.2         33           2
 H histidine           2.6         27           2
 I isoleucine          7.6         79           2
 K lysine              5.4         56           3
 L leucine            11.8        122           3
 M methionine          2.8         29           2
 N asparagine          4.0         41           2
 P proline             4.1         43           3
 Q glutamine           6.8         70           3
 R arginine            4.2         44           2
 S serine              4.6         48           2
 T threonine           4.8         50           2
 V valine              6.7         69           2
 W tryptophan          1.4         14           2
 Y tyrosine            3.7         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   importin 8 
IPO7                  0.657   importin 7 
CSE1L                 0.033   CSE1 chromosome segregation 1-like protein 
IPO9                  0.016   importin 9 
IPO11                 0.012   Ran binding protein 11 isoform 1 
IPO11                 0.012   Ran binding protein 11 isoform 2 
PELP1                 0.008   proline, glutamic acid and leucine rich protein 1 [...
PTMS                  0.008   parathymosin 
NCL                   0.007   nucleolin 
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
IPO13                 0.007   importin 13 
C12orf12              0.007   hypothetical protein LOC196477 
FAM9A                 0.007   family with sequence similarity 9, member A 
YTHDC1                0.007   splicing factor YT521-B isoform 2 
YTHDC1                0.007   splicing factor YT521-B isoform 1 
RGAG4                 0.007   retrotransposon gag domain containing 4 
MYT1L                 0.006   myelin transcription factor 1-like 
PPM1G                 0.006   protein phosphatase 1G 
PPM1G                 0.006   protein phosphatase 1G 
BAZ2B                 0.006   bromodomain adjacent to zinc finger domain, 2B [Homo...
CDC2L2                0.006   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.006   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
PLCB1                 0.006   phosphoinositide-specific phospholipase C beta 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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