Guide to the Human Genome
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Name: CSE1L Sequence: fasta or formatted (971aa) NCBI GI: 29029559
Description:

CSE1 chromosome segregation 1-like protein

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         73           3
 C cysteine            1.4         14           1
 D aspartate           4.4         43           2
 E glutamate           7.4         72           3
 F phenylalanine       5.7         55           2
 G glycine             3.2         31           1
 H histidine           2.5         24           1
 I isoleucine          7.4         72           3
 K lysine              6.0         58           2
 L leucine            13.1        127           4
 M methionine          2.2         21           2
 N asparagine          5.7         55           2
 P proline             4.8         47           2
 Q glutamine           4.8         47           1
 R arginine            3.3         32           3
 S serine              5.9         57           2
 T threonine           5.5         53           2
 V valine              5.5         53           2
 W tryptophan          0.8          8           1
 Y tyrosine            3.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CSE1 chromosome segregation 1-like protein 
IPO7                  0.038   importin 7 
IPO8                  0.035   importin 8 
IPO11                 0.022   Ran binding protein 11 isoform 1 
IPO11                 0.022   Ran binding protein 11 isoform 2 
IPO9                  0.018   importin 9 
TNPO1                 0.015   transportin 1 isoform 2 
TNPO1                 0.015   transportin 1 isoform 1 
TNPO2                 0.009   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.009   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.009   transportin 2 (importin 3, karyopherin beta 2b) isof...
XPO5                  0.008   exportin 5 
XPO1                  0.006   exportin 1 
XPO6                  0.005   exportin 6 
NLRP12                0.005   NLR family, pyrin domain containing 12 isoform 2 [Ho...
PDE12                 0.004   phosphodiesterase 12 
IPO4                  0.003   importin 4 
LRRTM3                0.003   leucine rich repeat transmembrane neuronal 3 
SERPINB9              0.003   serpin peptidase inhibitor, clade B, member 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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