Guide to the Human Genome
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Name: IPO11 Sequence: fasta or formatted (975aa) NCBI GI: 39725950
Description:

Ran binding protein 11 isoform 2

Referenced in:

Ran and Rag

Other entries for this name:
alt prot [1015aa] Ran binding protein 11 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         39           2
 C cysteine            1.8         18           1
 D aspartate           4.6         45           2
 E glutamate           8.1         79           3
 F phenylalanine       5.3         52           2
 G glycine             3.7         36           2
 H histidine           2.4         23           2
 I isoleucine          5.5         54           2
 K lysine              4.8         47           2
 L leucine            14.2        138           2
 M methionine          3.1         30           2
 N asparagine          4.0         39           1
 P proline             4.3         42           2
 Q glutamine           5.8         57           2
 R arginine            4.1         40           3
 S serine              5.4         53           2
 T threonine           7.1         69           2
 V valine              7.4         72           2
 W tryptophan          1.3         13           1
 Y tyrosine            3.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ran binding protein 11 isoform 2 
IPO11                 1.000   Ran binding protein 11 isoform 1 
IPO9                  0.024   importin 9 
CSE1L                 0.022   CSE1 chromosome segregation 1-like protein 
IPO7                  0.017   importin 7 
IPO8                  0.012   importin 8 
TNPO2                 0.011   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.011   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.011   transportin 2 (importin 3, karyopherin beta 2b) isof...
TNPO1                 0.011   transportin 1 isoform 2 
TNPO1                 0.011   transportin 1 isoform 1 
BOD1L                 0.006   biorientation of chromosomes in cell division 1-like...
FAM118A               0.005   hypothetical protein LOC55007 
FAM118A               0.005   hypothetical protein LOC55007 
POLE                  0.005   DNA-directed DNA polymerase epsilon 
KIAA1529              0.004   hypothetical protein LOC57653 
DIS3                  0.004   DIS3 mitotic control isoform b 
DIS3                  0.004   DIS3 mitotic control isoform a 
CCDC77                0.004   coiled-coil domain containing 77 isoform b 
CCDC77                0.004   coiled-coil domain containing 77 isoform b 
CCDC77                0.004   coiled-coil domain containing 77 isoform a 
CCDC77                0.004   coiled-coil domain containing 77 isoform b 
ZNF583                0.004   zinc finger protein 583 
ZNF583                0.004   zinc finger protein 583 
ZNF583                0.004   zinc finger protein 583 
ZNF140                0.004   zinc finger protein 140 
LRRC48                0.003   leucine rich repeat containing 48 isoform b 
LRRC48                0.003   leucine rich repeat containing 48 isoform b 
LRRC48                0.003   leucine rich repeat containing 48 isoform a 
LRRC48                0.003   leucine rich repeat containing 48 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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