Guide to the Human Genome
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Name: IPO13 Sequence: fasta or formatted (963aa) NCBI GI: 224831257
Description:

importin 13

Referenced in:

Nucleus and Nucleolus
Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         78           2
 C cysteine            2.2         21           1
 D aspartate           4.9         47           2
 E glutamate           6.5         63           2
 F phenylalanine       4.4         42           2
 G glycine             3.9         38           2
 H histidine           2.4         23           2
 I isoleucine          4.9         47           1
 K lysine              4.2         40           2
 L leucine            14.0        135           2
 M methionine          2.4         23           2
 N asparagine          2.5         24           1
 P proline             5.6         54           2
 Q glutamine           7.2         69           2
 R arginine            3.7         36           2
 S serine              7.2         69           2
 T threonine           3.9         38           2
 V valine              7.9         76           4
 W tryptophan          1.5         14           1
 Y tyrosine            2.7         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   importin 13 
TNPO3                 0.093   transportin 3 
XPO1                  0.025   exportin 1 
IPO8                  0.008   importin 8 
IPO4                  0.007   importin 4 
XPOT                  0.006   tRNA exportin 
XPO4                  0.004   exportin 4 
ADAMTS12              0.003   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100293313          0.003   PREDICTED: hypothetical protein 
LOC100290927          0.003   PREDICTED: hypothetical protein XP_002346500 
LOC100289192          0.003   PREDICTED: hypothetical protein XP_002342357 
BCKDHA                0.003   branched chain keto acid dehydrogenase E1, alpha pol...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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