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Search of human proteins with 52856421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo
sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens] 340 5e-94
gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo sapi... 338 1e-93
gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo sapi... 254 2e-68
gi|27734799 REST corepressor 2 [Homo sapiens] 39 0.003
gi|157785645 SPEG complex locus [Homo sapiens] 38 0.004
gi|157168329 formin 1 [Homo sapiens] 37 0.008
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.008
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 37 0.008
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 37 0.011
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 37 0.011
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 37 0.011
gi|119943102 CREB binding protein isoform b [Homo sapiens] 35 0.024
gi|119943104 CREB binding protein isoform a [Homo sapiens] 35 0.024
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 35 0.024
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 35 0.032
gi|191252782 p21-activated kinase 6 [Homo sapiens] 35 0.032
gi|191252780 p21-activated kinase 6 [Homo sapiens] 35 0.032
gi|9910476 p21-activated kinase 6 [Homo sapiens] 35 0.032
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 35 0.032
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 35 0.032
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 35 0.032
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.042
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.042
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.042
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 35 0.042
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.042
gi|7661892 REST corepressor 1 [Homo sapiens] 34 0.055
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 34 0.055
gi|11415052 retinoid X receptor, beta [Homo sapiens] 34 0.055
gi|118918413 MICAL C-terminal like [Homo sapiens] 34 0.055
>gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens]
Length = 172
Score = 340 bits (871), Expect = 5e-94
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD 60
MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD
Sbjct: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD 60
Query: 61 LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 120
LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS
Sbjct: 61 LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 120
Query: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA 172
SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA
Sbjct: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA 172
>gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo
sapiens]
Length = 192
Score = 338 bits (867), Expect = 1e-93
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD 60
MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD
Sbjct: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD 60
Query: 61 LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 120
LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS
Sbjct: 61 LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 120
Query: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQ 171
SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQ
Sbjct: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQ 171
>gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo
sapiens]
Length = 138
Score = 254 bits (650), Expect = 2e-68
Identities = 138/172 (80%), Positives = 138/172 (80%), Gaps = 34/172 (19%)
Query: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDD 60
MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAG
Sbjct: 1 MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAG--------------------- 39
Query: 61 LNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 120
AQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS
Sbjct: 40 -------------AQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSS 86
Query: 121 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA 172
SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA
Sbjct: 87 SSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEGLGETPPAKKLNFDQA 138
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 29 LHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIK---ATVKRKVY 85
L P ++ ++WT E + A++R+G D I+ VI +T+ Q+K + +R+
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFN 378
Query: 86 EDS-------------GIPLPAESPKKGPKKVASGV--------------------LSPP 112
+ G P+P E ++G A + +PP
Sbjct: 379 LEEVLQEWEAEQDGAPGAPVPMEEARRGAPLPAPALEEDDEVQITSVSTSVPRSVPPAPP 438
Query: 113 PAAPPPSSSSVPEAGGPPI 131
P PP S S P PP+
Sbjct: 439 PPPPPTSLSQPPPLLRPPL 457
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 38.1 bits (87), Expect = 0.004
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 94 AESPKKGPKK----------VASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADV-TLSA 142
A+ P +GP V + V SPPP AP VP AGGPP+ +KA V T+
Sbjct: 2258 AQGPSQGPAAPPSEPKPHAAVFARVASPPPGAP---EKRVPSAGGPPVLAEKARVPTVPP 2314
Query: 143 LNDSDANSDVVDIE 156
S +S + ++E
Sbjct: 2315 RPGSSLSSSIENLE 2328
Score = 34.7 bits (78), Expect = 0.042
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 87 DSGIPLPAESPK-------KGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKK-QKADV 138
D+G P+PA +P+ P V + +S PPA PP+ PE ++ A
Sbjct: 2878 DTGTPIPASTPQGVKPVSSSTPVYVVTSFVSAPPAPEPPAPEPPPEPTKVTVQSLSPAKE 2937
Query: 139 TLSALNDSDANSDVVDIEGLGETPPAKKLNF 169
+S+ S +S + L + PP K F
Sbjct: 2938 VVSSPGSSPRSSPRPEGTTLRQGPPQKPYTF 2968
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 99 KGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSD--ANSDV 152
+G + +G +PP PP + V GG P+ A V L L ++ A SDV
Sbjct: 5 RGTRGEDAGTRAPPSPGVPPKRAKVGAGGGAPVAVAGAPVFLRPLKNAAVCAGSDV 60
Score = 26.9 bits (58), Expect = 8.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQK 135
P P+ +PK + +P P AP P+ PE P++ K
Sbjct: 2184 PKPS-TPKSAEPSATTPSDAPQPPAPQPAQDKAPEPRPEPVRASK 2227
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 37.0 bits (84), Expect = 0.008
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 SGIPLPAESPKKGPKKVASGVLSPPPAAPP--PSSSSVPEAGGPP 130
+G PLP P P S PPP PP P+S + P GGPP
Sbjct: 676 AGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPP 720
Score = 29.3 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 91 PLPAE----SPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPP 130
PLP+ SP V++G PPP PPP AG PP
Sbjct: 657 PLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPP 700
Score = 27.7 bits (60), Expect = 5.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPI 131
P PA P P G LSP P PP S+ GPP+
Sbjct: 647 PPPASIPPPPPLPSGLGSLSPAPPMPPVSA-------GPPL 680
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.008
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 91 PLPA-ESPKKGPKKVASGVLSPPPAAPPPSSSSV------------PEAGGPPIKKQKAD 137
P+PA E P++ P A G L PPP PPP V P GGPP ++ D
Sbjct: 822 PVPAKEEPEELP--AAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEE--D 877
Query: 138 VTLSALNDSDANSD 151
+T+ +N SD +
Sbjct: 878 LTVININSSDEEEE 891
Score = 30.4 bits (67), Expect = 0.79
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANS 150
P P +P P V S P A P PS+ +P AG P + T AN
Sbjct: 657 PSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTT--------ANH 708
Query: 151 DVVDIEGLGETPP 163
+ + GL PP
Sbjct: 709 LGLSVPGLVSVPP 721
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 37.0 bits (84), Expect = 0.008
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 88 SGIPLPAESPKKGPKKVASGVLSP----PPAAPPPSSSSVPEAGGPP 130
S P PA SP+ G + G L P PP PPPS ++ PEA PP
Sbjct: 901 SPAPAPAASPQPGSRGPRDG-LGPEPQEPPPGPPPSPAAAPEAVPPP 946
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPP-----SSSSVPEAGGPPIKKQKADVTLSALND 145
P P P+ GP K PPP PPP S P GPPI + +L+D
Sbjct: 197 PPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDD 256
Query: 146 SDA 148
+DA
Sbjct: 257 ADA 259
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPP-----SSSSVPEAGGPPIKKQKADVTLSALND 145
P P P+ GP K PPP PPP S P GPPI + +L+D
Sbjct: 197 PPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDD 256
Query: 146 SDA 148
+DA
Sbjct: 257 ADA 259
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 36.6 bits (83), Expect = 0.011
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPP-----SSSSVPEAGGPPIKKQKADVTLSALND 145
P P P+ GP K PPP PPP S P GPPI + +L+D
Sbjct: 197 PPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDD 256
Query: 146 SDA 148
+DA
Sbjct: 257 ADA 259
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 35.4 bits (80), Expect = 0.024
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 78 ATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSP-PPAAPPPSSSSVPEAGGPPIKKQKA 136
AT+ + +P P +P P + S +P PPA P PS S+ AG P + + +
Sbjct: 1832 ATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQP 1891
Query: 137 DVTLS 141
T+S
Sbjct: 1892 PTTVS 1896
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 35.4 bits (80), Expect = 0.024
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 78 ATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSP-PPAAPPPSSSSVPEAGGPPIKKQKA 136
AT+ + +P P +P P + S +P PPA P PS S+ AG P + + +
Sbjct: 1870 ATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQP 1929
Query: 137 DVTLS 141
T+S
Sbjct: 1930 PTTVS 1934
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 35.4 bits (80), Expect = 0.024
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 88 SGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSD 147
+G+P E+P+ GP A+ V S P A P ++ P G Q D++LS +S
Sbjct: 39 AGVPDQPEAPQPGPNTTAAPVDSGPKAGLAPETTETP--AGASETAQATDLSLSPGGESK 96
Query: 148 ANSDVVD 154
AN D
Sbjct: 97 ANCSPED 103
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 35.0 bits (79), Expect = 0.032
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 24/149 (16%)
Query: 33 ADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQ--IKA--TVKRKVYEDS 88
+ SS + + ++E E A K+ V K++ VA+ +KA T RK
Sbjct: 218 SSSSSSSSSSDDSEEEKAAATPKK---------TVPKKQVVAKAPVKAATTPTRKSSSSE 268
Query: 89 GIPLPAESPKKGPKKVASGVLS--PPPAAPPPSSSSVPEAGGPPIKKQK-ADVTLSALND 145
E +K P K G S PPP+APPP S + ++KQ+ + + + ++
Sbjct: 269 DSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDE 328
Query: 146 SDANSD--------VVDIEGLGETPPAKK 166
SD++S+ V + + PPAKK
Sbjct: 329 SDSSSEEEKKPPTKAVVSKATTKPPPAKK 357
Score = 27.7 bits (60), Expect = 5.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 86 EDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALND 145
+D PA + K K A V + PA P ++ P GG + +KAD + S
Sbjct: 373 DDEAPSKPAGTTKNSSNKPA--VTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEES 430
Query: 146 SDANSD 151
S + +
Sbjct: 431 SSSEEE 436
Score = 26.9 bits (58), Expect = 8.7
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 98 KKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDIEG 157
KK P+KVA G PA+ KK KA+ + S+ +D + + ++G
Sbjct: 491 KKKPQKVAGGAAPSKPAS---------------AKKGKAESSNSSSSDDSSEEEEEKLKG 535
Query: 158 LGE-TPPAKKLN 168
G P A K N
Sbjct: 536 KGSPRPQAPKAN 547
>gi|191252782 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.0 bits (79), Expect = 0.032
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 13 SAAGAAFTKLGELTMQLHPVADSSPAGAKW-TETEIEMLRAAVKRFGDDLNHISCVIKER 71
S A F + +QL SSP GA T T ++AA K ++ SC++
Sbjct: 179 SLGPAEFQGASQRCLQLGACLQSSPPGASPPTGTNRHGMKAA-KHGSEEARPQSCLVGSA 237
Query: 72 T----------VAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSS 121
T ++++KR+++ + A +P K PPP + P SS
Sbjct: 238 TGRPGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKP------GPPPQSKPNSSF 291
Query: 122 SVPEAGGPPIKKQKADV--------TLSALNDSDANS 150
P+ PP KA T S L SD +S
Sbjct: 292 RPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSS 328
>gi|191252780 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.0 bits (79), Expect = 0.032
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 13 SAAGAAFTKLGELTMQLHPVADSSPAGAKW-TETEIEMLRAAVKRFGDDLNHISCVIKER 71
S A F + +QL SSP GA T T ++AA K ++ SC++
Sbjct: 179 SLGPAEFQGASQRCLQLGACLQSSPPGASPPTGTNRHGMKAA-KHGSEEARPQSCLVGSA 237
Query: 72 T----------VAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSS 121
T ++++KR+++ + A +P K PPP + P SS
Sbjct: 238 TGRPGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKP------GPPPQSKPNSSF 291
Query: 122 SVPEAGGPPIKKQKADV--------TLSALNDSDANS 150
P+ PP KA T S L SD +S
Sbjct: 292 RPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSS 328
>gi|9910476 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 35.0 bits (79), Expect = 0.032
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 13 SAAGAAFTKLGELTMQLHPVADSSPAGAKW-TETEIEMLRAAVKRFGDDLNHISCVIKER 71
S A F + +QL SSP GA T T ++AA K ++ SC++
Sbjct: 179 SLGPAEFQGASQRCLQLGACLQSSPPGASPPTGTNRHGMKAA-KHGSEEARPQSCLVGSA 237
Query: 72 T----------VAQIKATVKRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSS 121
T ++++KR+++ + A +P K PPP + P SS
Sbjct: 238 TGRPGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKP------GPPPQSKPNSSF 291
Query: 122 SVPEAGGPPIKKQKADV--------TLSALNDSDANS 150
P+ PP KA T S L SD +S
Sbjct: 292 RPPQKDNPPSLVAKAQSLPSDQPVGTFSPLTTSDTSS 328
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 35.0 bits (79), Expect = 0.032
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 2 TSASTKVGEIFSAAGAAFTKLGELTMQ------LHPVADSSPAGA-KWTETEIEMLRAAV 54
T++ + +F A G L L ++ HP+A+ AG+ KWT E ++ A+
Sbjct: 843 TNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKAL 902
Query: 55 KRFGDDLNHISCVIKERTVAQ 75
+ D + ++K +TVAQ
Sbjct: 903 ATYSKDFIFVQKMVKSKTVAQ 923
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 35.0 bits (79), Expect = 0.032
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 97 PKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKA-DVTLSALND 145
P P ASG SP PA+ P S+ + PP++ +K D+ LS L D
Sbjct: 89 PGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSILAD 138
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 35.0 bits (79), Expect = 0.032
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 97 PKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKA-DVTLSALND 145
P P ASG SP PA+ P S+ + PP++ +K D+ LS L D
Sbjct: 89 PGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSILAD 138
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.042
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 88 SGIPLPAESPKKGPKKVASGVL--SPPPAAPPPSSSSVPEAGGPPI 131
+ + PA P P ++A GVL +PPP APP S P A P+
Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPV 406
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.042
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 88 SGIPLPAESPKKGPKKVASGVL--SPPPAAPPPSSSSVPEAGGPPI 131
+ + PA P P ++A GVL +PPP APP S P A P+
Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPV 406
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.042
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 88 SGIPLPAESPKKGPKKVASGVL--SPPPAAPPPSSSSVPEAGGPPI 131
+ + PA P P ++A GVL +PPP APP S P A P+
Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPV 406
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.042
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 88 SGIPLPAESPKKGPKKVASGVL--SPPPAAPPPSSSSVPEAGGPPI 131
+ + PA P P ++A GVL +PPP APP S P A P+
Sbjct: 361 TALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPV 406
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.7 bits (78), Expect = 0.042
Identities = 31/91 (34%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 89 GIPLPA----ESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIK-----------K 133
G P PA SPK GP PPAA PPS P G PP K
Sbjct: 1285 GAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSP--GTPPPKGAPTPPAVTPPS 1342
Query: 134 QKADVTLSALNDSDANSDVVDIEGLGETPPA 164
K TL A S G TPPA
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPA 1373
Score = 31.2 bits (69), Expect = 0.46
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 92 LPAESPKKGPKKVASGVLSPP--PAAPPPSSSSVPEAGGPPIKK 133
L SPK P A+ SP PA PPP + P A PP K
Sbjct: 1232 LATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLK 1275
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 96 SPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANSDVVDI 155
SPK+ P PPA PPS P P VT S+L DS + V
Sbjct: 1609 SPKEAPT---------PPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTC 1659
Query: 156 EGLGETPPAKK 166
+ P A K
Sbjct: 1660 KMGATVPQASK 1670
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 89 GIPLPAE----SPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGP 129
G P P SPK GP + PPAA PPS P P
Sbjct: 938 GAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSP 982
Score = 28.1 bits (61), Expect = 3.9
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 89 GIPLPAESPKKGPKKVASGVLSPP--PAAPPPSSSSVPEAGGPPIKK 133
GIP + SPK P A+ SP PA P P + P A PP K
Sbjct: 929 GIPA-SPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPK 974
Score = 28.1 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 96 SPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGP 129
SPK GP + PPAA PPS P P
Sbjct: 972 SPKGGPATPSPKGAPTPPAATPPSPKGGPATPSP 1005
Score = 28.1 bits (61), Expect = 3.9
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 90 IPLPAESPKKGPKKVASGVLSPPPAAPP-----PSSSSVPEAGGPPIKKQKADVTLSA-- 142
+P S K GP +S PPAA P P+ + GP I K D T A
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408
Query: 143 -LNDSDANSDVVDIEGLGE------TPPA 164
L+ A + V EG TPPA
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPA 1437
Score = 27.7 bits (60), Expect = 5.1
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 91 PLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANS 150
P P SP P + S PPAA PPS P A P+ K + L
Sbjct: 1017 PSPKGSPAATPFPKGA---STPPAATPPSPKGSPAA--TPLPKGAPTTPAATLPSPKGGP 1071
Query: 151 DVVDIEGLGETPPA 164
++G TPPA
Sbjct: 1072 ATPSLKG-APTPPA 1084
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 96 SPKKGPKKVASGVLSPPPAAPPPSSSSVPEAGGP 129
SPK GP + PPAA PPS P P
Sbjct: 1066 SPKGGPATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Score = 27.3 bits (59), Expect = 6.7
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 96 SPKKGPKKVASGVLSPP--PAAPPPSSSSVPEAGGPPIKK 133
SPK P A+ SP PA P P + P A PP K
Sbjct: 958 SPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPK 997
Score = 26.9 bits (58), Expect = 8.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 89 GIPLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVP---EAGGPPIKKQKADVTLSALND 145
G P P+ PK GV PP P PS ++P E P KQ +++++ +
Sbjct: 863 GAPTPSAVTPLSPK----GVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSP 918
Query: 146 SDANSDVVDIEGLGETPPAK 165
A + +G+ +P K
Sbjct: 919 KKARATPAP-KGIPASPSPK 937
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 89 GIPLPAE----SPKKGPKKVASGVLSPPPAAPPPSSSSVPEA 126
G P P SPK GP + PPA PPS P A
Sbjct: 984 GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
Score = 26.9 bits (58), Expect = 8.7
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 96 SPKKGPKKVASGVLSP---PPAAPPPSSSSVPEAGGPPIKK 133
SPK P A SP P A P P +S P A PP K
Sbjct: 1004 SPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPK 1044
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 34.3 bits (77), Expect = 0.055
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 40 AKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIK---ATVKRKVYEDSGIPLPAES 96
A+WT E + A++++G D IS VI ++V Q+K +R+ D + E
Sbjct: 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVL---QEW 437
Query: 97 PKKGPKKVASGVLSPPPAAPPPSSSSVPE 125
+ K+ +G + P P +S +PE
Sbjct: 438 EAEHGKEETNGPSNQKPVKSPDNSIKMPE 466
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 34.3 bits (77), Expect = 0.055
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 43 TETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKA-------TVKRKVYEDSGIPLPAE 95
+E E+L A+ R G ++ ++ ++ T+A A ++ R +G A
Sbjct: 48 SEALAELLHGALLRRGPEMGYLPGSDRDPTLATPPAGQTLAVPSLPRATEPGTGPLTTAV 107
Query: 96 SPK--KGPKKVASGVLSPPP--AAPPPSSSSVPEAGGPPIKKQKAD------------VT 139
+P +G A +L+PPP APPP S P + GPP+ + + VT
Sbjct: 108 TPNGVRGAGPTAPELLTPPPGTTAPPPPS---PASPGPPLGPEGGEEETTTTIITTTTVT 164
Query: 140 LSALNDSDANSDVVDIEGLGETP 162
+ + N+++ + EG E+P
Sbjct: 165 TTVTSPVLCNNNISEGEGYVESP 187
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 34.3 bits (77), Expect = 0.055
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 89 GIPLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVP---EAGGPPIKKQKADVTLSALND 145
G PLP P P SG PPP PPP S P + G P A S
Sbjct: 102 GPPLP---PSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVS 158
Query: 146 SDANSDVVDIEGLGETPP 163
S + V + G G PP
Sbjct: 159 SPQINSTVSLPGGGSGPP 176
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 34.3 bits (77), Expect = 0.055
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 69 KERTVAQIKATVKRKVY-EDSGIPLPAESPKKGPKKVASGVLSPPPAAPPPSSSSVPEAG 127
+ + + + + KRKV EDS L E + K + +PPP PPP P AG
Sbjct: 416 QRKDIRDLFGSPKRKVLPEDSAQAL--EKLLQPFKSTSLRQAAPPPPPPPPPPPPPPTAG 473
Query: 128 GP-----PIKKQKADVTLSALNDSDANSD 151
G P++ Q + + SA + S +++D
Sbjct: 474 GADSKNFPLRAQVTEASSSASSTSSSSAD 502
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,751,599
Number of Sequences: 37866
Number of extensions: 433255
Number of successful extensions: 7135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 5155
Number of HSP's gapped (non-prelim): 2038
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.