Guide to the Human Genome
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Search of human proteins with 52630326

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|52630326 chromodomain helicase DNA binding protein 3 isoform
1 [Homo sapiens]
         (2000 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...  4096   0.0  
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...  4028   0.0  
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...  4008   0.0  
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...  2701   0.0  
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...  2625   0.0  
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...   581   e-165
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...   566   e-161
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...   526   e-148
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...   514   e-145
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...   514   e-145
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...   505   e-142
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...   444   e-124
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...   435   e-121
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re...   422   e-117
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...   410   e-114
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...   407   e-113
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...   405   e-112
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...   403   e-111
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...   402   e-111
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...   401   e-111
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...   401   e-111
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...   393   e-108
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...   393   e-108
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...   388   e-107
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                290   1e-77
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...   271   6e-72
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...   271   6e-72
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...   268   5e-71
gi|4557565 excision repair cross-complementing rodent repair def...   261   6e-69
gi|58219008 RAD26L hypothetical protein [Homo sapiens]                219   3e-56

>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score = 4096 bits (10623), Expect = 0.0
 Identities = 2000/2000 (100%), Positives = 2000/2000 (100%)

Query: 1    MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
            MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN
Sbjct: 1    MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60

Query: 61   KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
            KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK
Sbjct: 61   KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120

Query: 121  GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
            GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI
Sbjct: 121  GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180

Query: 181  PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
            PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP
Sbjct: 181  PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240

Query: 241  ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
            ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG
Sbjct: 241  ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300

Query: 301  GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
            GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL
Sbjct: 301  GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360

Query: 361  GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
            GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC
Sbjct: 361  GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420

Query: 421  PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
            PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI
Sbjct: 421  PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480

Query: 481  HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
            HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR
Sbjct: 481  HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540

Query: 541  PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
            PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED
Sbjct: 541  PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600

Query: 601  DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
            DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ
Sbjct: 601  DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660

Query: 661  STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
            STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV
Sbjct: 661  STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720

Query: 721  KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
            KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK
Sbjct: 721  KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780

Query: 781  EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
            EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG
Sbjct: 781  EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840

Query: 841  GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
            GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN
Sbjct: 841  GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900

Query: 901  GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
            GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL
Sbjct: 901  GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960

Query: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
            GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN
Sbjct: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020

Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
            IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080

Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
            IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG
Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140

Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
            LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR
Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200

Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
            KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI
Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260

Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
            ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK
Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320

Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
            LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG
Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380

Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
            RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL
Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440

Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
            VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK
Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500

Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
            KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP
Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560

Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
            SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE
Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620

Query: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680
            VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG
Sbjct: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680

Query: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740
            DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW
Sbjct: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740

Query: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800
            HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL
Sbjct: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800

Query: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860
            EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV
Sbjct: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860

Query: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920
            LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY
Sbjct: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920

Query: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980
            PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL
Sbjct: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980

Query: 1981 VSDGLDRKEPRAGEVICIDD 2000
            VSDGLDRKEPRAGEVICIDD
Sbjct: 1981 VSDGLDRKEPRAGEVICIDD 2000


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score = 4028 bits (10447), Expect = 0.0
 Identities = 1968/1968 (100%), Positives = 1968/1968 (100%)

Query: 33   PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 92
            PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG
Sbjct: 92   PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 151

Query: 93   SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 152
            SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS
Sbjct: 152  SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 211

Query: 153  EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 212
            EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA
Sbjct: 212  EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 271

Query: 213  AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
            AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS
Sbjct: 272  AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331

Query: 273  KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 332
            KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH
Sbjct: 332  KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 391

Query: 333  SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 392
            SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII
Sbjct: 392  SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 451

Query: 393  LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 452
            LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE
Sbjct: 452  LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 511

Query: 453  DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 512
            DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI
Sbjct: 512  DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 571

Query: 513  LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 572
            LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI
Sbjct: 572  LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 631

Query: 573  FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 632
            FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT
Sbjct: 632  FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 691

Query: 633  VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 692
            VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP
Sbjct: 692  VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 751

Query: 693  AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 752
            AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA
Sbjct: 752  AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 811

Query: 753  QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 812
            QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY
Sbjct: 812  QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 871

Query: 813  VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 872
            VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL
Sbjct: 872  VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 931

Query: 873  GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 932
            GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE
Sbjct: 932  GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 991

Query: 933  RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 992
            RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ
Sbjct: 992  RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 1051

Query: 993  KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1052
            KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG
Sbjct: 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1111

Query: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1112
            GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG
Sbjct: 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1171

Query: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172
            ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR
Sbjct: 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1231

Query: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232
            IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG
Sbjct: 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1291

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1292
            TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV
Sbjct: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1351

Query: 1293 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1352
            VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA
Sbjct: 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1411

Query: 1353 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1412
            AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF
Sbjct: 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1471

Query: 1413 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1472
            NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE
Sbjct: 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1531

Query: 1473 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1532
            TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS
Sbjct: 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1591

Query: 1533 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1592
            SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK
Sbjct: 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1651

Query: 1593 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1652
            METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE
Sbjct: 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1711

Query: 1653 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1712
            EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA
Sbjct: 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1771

Query: 1713 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1772
            DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII
Sbjct: 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1831

Query: 1773 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1832
            NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR
Sbjct: 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1891

Query: 1833 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1892
            FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI
Sbjct: 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1951

Query: 1893 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 1952
            AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ
Sbjct: 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 2011

Query: 1953 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2000
            MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD
Sbjct: 2012 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2059



 Score = 33.9 bits (76), Expect = 1.6
 Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 24/126 (19%)

Query: 233 PIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL 292
           P  P  PP LPPPP     PPP +          G K+R + P     +K+   K   P 
Sbjct: 74  PPPPPPPPPLPPPPP---PPPPDKDDIRLLPSALGVKKRKRGP-----KKQKENKPGKPR 125

Query: 293 KIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRP 352
           K        ++K+     F S+     E  ES    GS +       GP R ++ K    
Sbjct: 126 K--------RKKRDSEEEFGSERDEYREKSES---GGSEYGT-----GPGRKRRRKHREK 169

Query: 353 GRKKKK 358
             KK K
Sbjct: 170 KEKKTK 175



 Score = 33.5 bits (75), Expect = 2.1
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 424 EKEGVQWEAKEEEEEYEEEGEEEGEKE----EEDD 454
           E+E  +    EEEEE EEEG+EE E+E    +EDD
Sbjct: 9   EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDD 43


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score = 4008 bits (10395), Expect = 0.0
 Identities = 1966/2000 (98%), Positives = 1966/2000 (98%), Gaps = 34/2000 (1%)

Query: 1    MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
            MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN
Sbjct: 1    MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60

Query: 61   KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
            KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK
Sbjct: 61   KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120

Query: 121  GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
            GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI
Sbjct: 121  GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180

Query: 181  PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
            PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP
Sbjct: 181  PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240

Query: 241  ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
            ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG
Sbjct: 241  ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300

Query: 301  GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
            GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL
Sbjct: 301  GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360

Query: 361  GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
            GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC
Sbjct: 361  GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420

Query: 421  PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
            PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI
Sbjct: 421  PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480

Query: 481  HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
            HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR
Sbjct: 481  HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540

Query: 541  PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
            PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED
Sbjct: 541  PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600

Query: 601  DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
            DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ
Sbjct: 601  DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660

Query: 661  STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
            STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV
Sbjct: 661  STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720

Query: 721  KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
            KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK
Sbjct: 721  KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780

Query: 781  EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
            EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG
Sbjct: 781  EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840

Query: 841  GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
            GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN
Sbjct: 841  GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900

Query: 901  GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
            GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL
Sbjct: 901  GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960

Query: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
            GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN
Sbjct: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020

Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
            IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080

Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
            IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG
Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140

Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
            LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR
Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200

Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
            KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI
Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260

Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
            ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK
Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320

Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
            LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG
Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380

Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
            RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL
Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440

Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
            VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK
Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500

Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
            KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP
Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560

Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
            SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE
Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620

Query: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680
            VPGVPGEMEPEPGYRGDREKS                                  EDVKG
Sbjct: 1621 VPGVPGEMEPEPGYRGDREKS----------------------------------EDVKG 1646

Query: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740
            DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW
Sbjct: 1647 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1706

Query: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800
            HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL
Sbjct: 1707 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1766

Query: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860
            EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV
Sbjct: 1767 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1826

Query: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920
            LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY
Sbjct: 1827 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1886

Query: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980
            PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL
Sbjct: 1887 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1946

Query: 1981 VSDGLDRKEPRAGEVICIDD 2000
            VSDGLDRKEPRAGEVICIDD
Sbjct: 1947 VSDGLDRKEPRAGEVICIDD 1966


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score = 2701 bits (7001), Expect = 0.0
 Identities = 1370/1987 (68%), Positives = 1574/1987 (79%), Gaps = 159/1987 (8%)

Query: 50   RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 109
            +K+ PKK KENK  K +++KK  S +E     ++  EKSES GS+Y   P +K+++K ++
Sbjct: 49   KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105

Query: 110  KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 166
            KKEKK KR+KK E +         E KSS  L+  WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 106  KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165

Query: 167  QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 226
            QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA         
Sbjct: 166  QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219

Query: 227  AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286
             V+ + P+A S PP +P       QP PIR+AKTKEGKGPG +++ K  +  DG+KK +G
Sbjct: 220  -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268

Query: 287  KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 346
            KK A LK + G +  KRKKG S         E E EESD DS S+HSAS R +      K
Sbjct: 269  KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321

Query: 347  LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 406
              + R  RKKK++         ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 322  KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370

Query: 407  DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 466
            DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE    EEDDHME+CRVCKDGG
Sbjct: 371  DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426

Query: 467  ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 522
            ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP    V
Sbjct: 427  ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486

Query: 523  AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 582
             +P P   D  P +PPP+PL+G  EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 487  GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543

Query: 583  RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 642
            RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 544  RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603

Query: 643  KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 702
            KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+  KQ+YW HREL++GED   P++  KK 
Sbjct: 604  KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663

Query: 703  KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 759
            K+L+ D    PP +P  DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 664  KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723

Query: 760  ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 819
            ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 724  ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783

Query: 820  KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 879
            K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 784  KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843

Query: 880  LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 939
            LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 844  LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903

Query: 940  FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 999
            FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 904  FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963

Query: 1000 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1059
            LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 964  LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023

Query: 1060 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1119
            GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083

Query: 1120 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1179
            DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ  KV
Sbjct: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143

Query: 1180 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1239
            MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203

Query: 1240 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1261
            + E                                     G+NK+ EDSSVIHYD+ AI+
Sbjct: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263

Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
            +LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323

Query: 1322 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1374
            LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ       DNQSEYS+GSE+EDEDF
Sbjct: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383

Query: 1375 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1431
            +ERPE   GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443

Query: 1432 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1491
            QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503

Query: 1492 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1547
            IGVMSLV+KKVQEFEH+NG++S P+L+P+     K     SS  ++P   SP     +  
Sbjct: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563

Query: 1548 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1593
              P   +       EK  G + P            L++ E+E++ E P    R  E+   
Sbjct: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623

Query: 1594 ETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEE 1653
            ETE   PSP     E + P K  + D++     E+      RGD  +   + T  E  E+
Sbjct: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKL-----ELSLIHS-RGDSSELRPDDTKAE--EK 1675

Query: 1654 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIAD 1713
            +P++ Q++ ++   E  D GK+ED KG                       K +FMFNIAD
Sbjct: 1676 EPIETQQNGDK---EEDDEGKKEDKKG-----------------------KFKFMFNIAD 1709

Query: 1714 GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN 1773
            GGFTELHTLWQNEERAA+SSGK+ +IWHRRHDYWLLAGIV HGYARWQDIQND ++ I+N
Sbjct: 1710 GGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILN 1769

Query: 1774 EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF 1833
            EPFK+E +KGN+LEMKNKFLARRFKLLEQALVIEEQLRRAAYLN++Q+P HPAMAL+AR 
Sbjct: 1770 EPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARL 1829

Query: 1834 AEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIA 1893
            AE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLP+ LSRIPP+A
Sbjct: 1830 AEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVA 1889

Query: 1894 ARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQM 1953
            ARLQMSERSILSRL ++  +    P    G + +   Y   F     G       NY+QM
Sbjct: 1890 ARLQMSERSILSRLTNRAGD----PTIQQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQM 1945

Query: 1954 PAGSFIT 1960
            P G ++T
Sbjct: 1946 PLGPYVT 1952


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score = 2625 bits (6803), Expect = 0.0
 Identities = 1351/1951 (69%), Positives = 1540/1951 (78%), Gaps = 121/1951 (6%)

Query: 18   LRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR------ 71
            L  S PP     +  P++D   L  +     K+K+ PKK ++ K  K +++KK       
Sbjct: 24   LNNSLPPPHPENEEDPEED---LSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCR 80

Query: 72   ---DSE---EEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG-- 123
               DS     EF  E +E   +S+S GS+Y   PG+K+++K   KKEKK+K ++K E   
Sbjct: 81   QLGDSSGEGPEFVEEEEEVALRSDSEGSDYT--PGKKKKKKLGPKKEKKSKSKRKEEEEE 138

Query: 124  -DGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPM 182
             D      E KSSA LL  WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +
Sbjct: 139  EDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAV 198

Query: 183  SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPAL 242
            SKMM +LGAKWREFS NNPFKGS+ A  AAAAAAA AV E +  A   A           
Sbjct: 199  SKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA----------- 247

Query: 243  PPPPAADIQPPPIRRAKTKEGKGPGHKRRSK-SPRVPDGRKKLRGKKMAPLKIKLGLLGG 301
            PPPP  ++   PIR+AKTKEGKGP  +R+ K SPRVPD  KK + KK+APLKIKLG  G 
Sbjct: 248  PPPPPVEV---PIRKAKTKEGKGPNARRKPKGSPRVPDA-KKPKPKKVAPLKIKLGGFGS 303

Query: 302  KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG 361
            KRK+  S     D        ESD D  S++S S       R+ + ++     KKKK   
Sbjct: 304  KRKRSSSEDDDLDV-------ESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKK--- 353

Query: 362  CPAVAGEEEV---DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKW 418
                 GEEEV   DGYETDHQDYCEVCQQGGEIILCDTCPRAYH+VCLDP++++APEGKW
Sbjct: 354  ----KGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 409

Query: 419  SCPHCEKEGVQWEAKEEEEEYEEEGEEEGE--KEEEDDHMEYCRVCKDGGELLCCDACIS 476
            SCPHCEKEG+QWEAKE+  E EE  EE G   +EE+D HME+CRVCKDGGELLCCD C S
Sbjct: 410  SCPHCEKEGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPS 469

Query: 477  SYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDV 536
            SYHIHCLNPPLP+IPNGEWLCPRCTCP LKG+VQKIL W+WG+PP   P P+  D +P+ 
Sbjct: 470  SYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNT 529

Query: 537  PPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYG 596
            P P+PL+GR ER+FFVKW G+SYWHCSW  ELQLE+   VM+RNYQRKNDMDEPP  D+G
Sbjct: 530  PSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFG 589

Query: 597  SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDL 656
              E+  KS KRK KDP +AEMEE++YR+GIKPEWM +HRI+NHSVDKKG+ HYL+KWRDL
Sbjct: 590  GDEE--KSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDL 647

Query: 657  PYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN 716
            PYDQ++WE +++ I +Y+  KQSYW HREL+ GE+  +P K  KK K  + + PP +PT 
Sbjct: 648  PYDQASWESEDVEIQDYDLFKQSYWNHRELMRGEE-GRPGKKLKKVKLRKLERPPETPTV 706

Query: 717  DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776
            DPTVKYE QP ++ ATGGTLH YQ+EGLNWLRFSWAQGTDTILADEMGLGKT+QT VFLY
Sbjct: 707  DPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLY 766

Query: 777  SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836
            SLYKEGH+KGPFLVSAPLSTIINWEREF+MWAP  YVVTY GDKDSRAIIRENEFSFEDN
Sbjct: 767  SLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDN 826

Query: 837  AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896
            AI+GGKKA +MK+EA VKFHVLLTSYELITID A LGSI WACL+VDEAHRLKNNQSKFF
Sbjct: 827  AIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFF 886

Query: 897  RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKL 956
            RVLNGY + HKLLLTGTPLQNNLEELFHLLNFLTPERF+NLEGFLEEFADI+KEDQIKKL
Sbjct: 887  RVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL 946

Query: 957  HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV 1016
            HD+LGPHMLRRLKADVFKNMP+KTELIVRVELSPMQKKYYKYILTRNFEALN+RGGGNQV
Sbjct: 947  HDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV 1006

Query: 1017 SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQG 1076
            SLLN++MDLKKCCNHPYLFPVAAME+PK+P+G Y+G ALI++SGKL+LLQKML+ LKE G
Sbjct: 1007 SLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGG 1066

Query: 1077 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLST 1136
            HRVLIFSQMTKMLDLLEDFL++EGYKYERIDGGITG +RQEAIDRFNAPGAQQFCFLLST
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126

Query: 1137 RAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQ 1196
            RAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ  KVMIYRFVTRASVEERITQ
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186

Query: 1197 VAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDE---NEGENKE-EDSSV 1252
            VAK+KMMLTHLVVRPGLGSK GSMSKQELDDILKFGTEELFKDE     G+NKE EDSSV
Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSV 1246

Query: 1253 IHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREED--KIEEIEREIIKQE 1310
            IHYD++AI RLLDRNQD TEDT++Q MNEYLSSFKVAQYVVREE+  + EE+EREIIKQE
Sbjct: 1247 IHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQE 1306

Query: 1311 ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEY 1363
            E+VDPDYWEKLLRHHYEQQQEDLARNLGKGKR+RKQVNYND +QED+       DNQS+Y
Sbjct: 1307 ESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDY 1366

Query: 1364 SVGSEEEDEDFDERPEG-RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
            SV SEE DEDFDER E  RR S++ LRN+KDKPLPPLLARVGGNIEVLGFN RQRKAFLN
Sbjct: 1367 SVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLN 1426

Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREG 1482
            A+MR+GMPPQDAFTTQWLVRDLRGK+EKEFKAYVSLFMRHLCEPGADG+ETFADGVPREG
Sbjct: 1427 AIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREG 1486

Query: 1483 LSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTP 1542
            LSRQ VLTRIGVMSL++KKVQEFEH+NGRWSMPEL     A+ + + + S P   SP TP
Sbjct: 1487 LSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL-----AEVEENKKMSQPGSPSPKTP 1541

Query: 1543 EASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKME-TEADAPS 1601
              S       + PA   P+E G  I     KEE   + EK  K++     +E T+A AP+
Sbjct: 1542 TPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPA 1601

Query: 1602 --------PAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGD----REKSATESTP-- 1647
                      P   E++E  ++    E P     ME EP    D     EKSA + TP  
Sbjct: 1602 SEDEKVVVEPPEGEEKVEKAEVKERTEEP-----METEPKGAADVEKVEEKSAIDLTPIV 1656

Query: 1648 GERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPG--PRDEPRSNGRREEKTEKP 1705
             E  EEK                   K E+ K +  L+ G  P+D    N  +++K  K 
Sbjct: 1657 VEDKEEK-------------------KEEEEKKEVMLQNGETPKD---LNDEKQKKNIKQ 1694

Query: 1706 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1765
            RFMFNIADGGFTELH+LWQNEERAA  + K  EIWHRRHDYWLLAGI+ HGYARWQDIQN
Sbjct: 1695 RFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQN 1754

Query: 1766 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHP 1825
            D ++AI+NEPFK E N+GNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+S++P+HP
Sbjct: 1755 DPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHP 1814

Query: 1826 AMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPAT 1885
            +MAL+ RFAE ECLAESHQHLSKES+AGNKPANAVLHKVL QLEELLSDMKADVTRLPAT
Sbjct: 1815 SMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPAT 1874

Query: 1886 LSRIPPIAARLQMSERSILSRLASKGTEPHP 1916
            ++RIPP+A RLQMSER+ILSRLA++  EP P
Sbjct: 1875 IARIPPVAVRLQMSERNILSRLANRAPEPTP 1905


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score =  581 bits (1497), Expect = e-165
 Identities = 416/1218 (34%), Positives = 638/1218 (52%), Gaps = 142/1218 (11%)

Query: 547  EREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKNDMDE-------PPPLDYG 596
            E ++ +KW G SY H +W  E  L+   +  L    N+++K D  +       P  ++Y 
Sbjct: 304  EIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYF 363

Query: 597  SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKK----GNYHYLVK 652
            + + +  S+  K     Y  +E       +K    T+ +    +  +K        YL K
Sbjct: 364  NCQQELASELNK----QYQIVERV---IAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCK 416

Query: 653  WRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPS 712
            W  LPY + +WE++ +   +++    S+  H        P +  K  K++          
Sbjct: 417  WMGLPYSECSWEDEALIGKKFQNCIDSF--HSRNNSKTIPTRECKALKQRPRF------- 467

Query: 713  SPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTI 772
                   V  + QP ++      L  YQLEGLNWL  SW +    ILADEMGLGKTIQTI
Sbjct: 468  -------VALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTI 520

Query: 773  VFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS 832
             FL  L+ +    GPFL+  PLST+ +W+REF++WAP+  VV Y GD  SR  IRE E+ 
Sbjct: 521  SFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWI 580

Query: 833  FEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQ 892
                               ++KF+ L+T+YE++  D+  LGSI WA L VDEAHRLKN+ 
Sbjct: 581  HSQTK--------------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDD 626

Query: 893  SKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ 952
            S  ++ L  +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F   E F E+     +E+ 
Sbjct: 627  SLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENG 685

Query: 953  IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG 1012
             + LH +L P +LRR+K DV K++PAK E I+RVE+S +QK+YYK+ILTRN++AL     
Sbjct: 686  YQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTR 745

Query: 1013 GNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
            G+    LNI+M+LKKCCNH YL  +   E  +  +G     +LI+SSGKL+LL K+L +L
Sbjct: 746  GSTSGFLNIVMELKKCCNHCYL--IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRL 803

Query: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 1132
            +E+G+RVLIFSQM +MLD+L ++L  + Y ++R+DG I G +R++A+D FNA G++ FCF
Sbjct: 804  RERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863

Query: 1133 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 1192
            LLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ  +V IYR VT+ +VEE
Sbjct: 864  LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923

Query: 1193 RITQVAKRKMMLTHLVV-------RPGLGSKAG-----SMSKQELDDILKFGTEELFKDE 1240
             I + AK+KM+L HLV+       R  L + +G       +K+EL  ILKFG E+LFK E
Sbjct: 924  EIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK-E 982

Query: 1241 NEGENKEEDSSVIHYDNEAIARLLD--RNQDATEDTDVQNMNEYLSSFKVAQYVVREEDK 1298
             EGE  E        D + I RL +   N+ +T  TD     E LS FKVA +   E++ 
Sbjct: 983  LEGEESEPQ----EMDIDEILRLAETRENEVSTSATD-----ELLSQFKVANFATMEDE- 1032

Query: 1299 IEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA-AQEDQ 1357
             EE+E    K  + + P+   K +     Q++ +    L + +   K+   ND+ +  + 
Sbjct: 1033 -EELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTES 1091

Query: 1358 DNQSEYSVGSEEEDEDFDERPEGRRQSK-RQLRNEKDKPLPPLLARVGGNIEVLGFNTRQ 1416
              Q++ S  SE E ED D+  + +R+ + R +R +                 V GF   +
Sbjct: 1092 KRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDL----------------VEGFTDAE 1135

Query: 1417 RKAFLNAVMRWGMP-------PQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGAD 1469
             + F+ A  ++G+P        +DA      V DL+   E    + VS    +  +   +
Sbjct: 1136 IRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKEN 1195

Query: 1470 GSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSS 1529
             SE    G  R G + +    ++ V S+++ + +EFE ++       +  DP  + K+  
Sbjct: 1196 ASEGKGPG-KRRGPTIKISGVQVNVKSIIQHE-EEFEMLH-----KSIPVDP--EEKKKY 1246

Query: 1530 RASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAE-----NQEEKPE 1584
              +   K +    E    +                E I+T  E +  +       ++KP+
Sbjct: 1247 CLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQ 1306

Query: 1585 KNSRIGEKMETEAD----------APSPAPSLGE--RLEPRK--IPLEDEVPGVPGEMEP 1630
                 G++++T AD              A + GE  +L+ RK  +  E++VP +  E   
Sbjct: 1307 -----GKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGI 1361

Query: 1631 EPGYRGDREKSATESTPGERGEEK-PL-DGQEHRERPEGETGDLGKREDVKGDRELRPG- 1687
            E       +  + E    + G EK P+   Q+ +E  E +   +  R+D +GD+E +   
Sbjct: 1362 ELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1421

Query: 1688 -PRDEPRSNGRREEKTEK 1704
              +++P+S   +     K
Sbjct: 1422 DKKEKPKSGDAKSSSKSK 1439



 Score = 43.1 bits (100), Expect = 0.003
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 48   KKRKRGPKKQKENKPGKPRKR--------KKRDSEEEFGSERDEYREKS---------ES 90
            K +KR P+ +KENK  + ++         +  D+  E G  +D+  EKS         E+
Sbjct: 1338 KLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKEN 1397

Query: 91   GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHV 150
              ++      RK +   +E+K+ K K+ K   GD       ++S   + +T G E V   
Sbjct: 1398 KENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIG 1457

Query: 151  FSEEDYHTLTNYKAFSQFMRPL 172
              E+D      +    + MRP+
Sbjct: 1458 EDEDDDLDQETFSICKERMRPV 1479



 Score = 36.2 bits (82), Expect = 0.33
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 19/194 (9%)

Query: 1524 DSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKP 1583
            DS   S ASS + +     EAS ++S   S+    +    G G  +    E +E+Q E  
Sbjct: 12   DSSLHSNASSHSASE----EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSES- 66

Query: 1584 EKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPG-----EMEPEPGYRGDR 1638
            E  S   +      +A     S  ER+   K  + +E P V G         EP     +
Sbjct: 67   ESESAGSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVYGVRRSNRSRQEPSRFNIK 125

Query: 1639 EKSATES---TPGERGEEKPLDGQEHRERP---EGETGDLGKRE-DVKGDRELRPGP-RD 1690
            E++++ S   +P  RG+ +    ++ ++ P   E E G   + E + K  +  RP P R 
Sbjct: 126  EEASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRT 185

Query: 1691 EPRSNGRREEKTEK 1704
             P+   +++ KT++
Sbjct: 186  VPKPRVKKQPKTQR 199



 Score = 33.5 bits (75), Expect = 2.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 519 EPPVAVPAPQQADGNPDVPP-PRPLQGRSEREFFVKWVGLSYWHCSWAKE 567
           E  +AV   +   G  D P   R     +E E+  KW+GL Y  CSW  E
Sbjct: 381 ERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDE 430



 Score = 33.1 bits (74), Expect = 2.8
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 1740 WHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANK---GNFLEMKNKFLARR 1796
            W    D  LL GI  HGY  W+ I+ D +  + ++    E +K   G  L+ +  +L   
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317

Query: 1797 FKLLEQAL 1804
             KLL + L
Sbjct: 1318 LKLLRKGL 1325



 Score = 31.6 bits (70), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 644 KGNYHYLVKWRDLPYDQSTWEEDE 667
           +G   YL+KW+   Y  STWE +E
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEE 325


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
            sapiens]
          Length = 1710

 Score =  566 bits (1458), Expect = e-161
 Identities = 358/927 (38%), Positives = 527/927 (56%), Gaps = 105/927 (11%)

Query: 529  QADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKN 585
            +ADG+P+    +  +   E ++ +KW G S+ H +W  E  L+   +  +    NY++K+
Sbjct: 298  EADGDPNAGFEKNKEP-GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 356

Query: 586  DMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRF------GIKPEWMTVHRIINH 639
                             +  KR +K+    ++E  YY         +  ++  V RII H
Sbjct: 357  -----------------QETKRWLKNASPEDVE--YYNCQQELTDDLHKQYQIVERIIAH 397

Query: 640  SVDKK--GNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRK 697
            S  K   G   Y  KW+ LPY + +WE+  +   +++     Y+   +      P +  K
Sbjct: 398  SNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQ--SKTTPFKDCK 455

Query: 698  YKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGT-LHMYQLEGLNWLRFSWAQGTD 756
              K++                 V  + QP +I    G  L  YQL GLNWL  SW +G  
Sbjct: 456  VLKQRPRF--------------VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNS 501

Query: 757  TILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTY 816
             ILADEMGLGKTIQTI FL  L+ E    GPFL+  PLST+ +W+RE Q WA +   V Y
Sbjct: 502  CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVY 561

Query: 817  TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 876
             GD +SR +IR +E++                   ++KF++LLT+YE++  D+A LG + 
Sbjct: 562  LGDINSRNMIRTHEWTHHQTK--------------RLKFNILLTTYEILLKDKAFLGGLN 607

Query: 877  WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNN 936
            WA + VDEAHRLKN+ S  ++ L  +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F++
Sbjct: 608  WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSS 667

Query: 937  LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY 996
             E F EE     +E     LH  L P +LRR+K DV K++PAK E I+R+E+S +QK+YY
Sbjct: 668  WEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYY 726

Query: 997  KYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALI 1056
            K+ILTRN++AL+    G+    LNIMM+LKKCCNH YL  +   ++ +  +       LI
Sbjct: 727  KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYL--IKPPDNNEFYNKQEALQHLI 784

Query: 1057 KSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQ 1116
            +SSGKL+LL K+L +L+E+G+RVLIFSQM +MLD+L ++L Y  + ++R+DG I G LR+
Sbjct: 785  RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK 844

Query: 1117 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQA 1176
            +A+D FNA G++ FCFLLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ 
Sbjct: 845  QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK 904

Query: 1177 NKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR------------PGLGSKAGSMSKQE 1224
             +V IYR VT+ SVEE I + AK+KM+L HLV++                S +   +K+E
Sbjct: 905  KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEE 964

Query: 1225 LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLS 1284
            L  ILKFG EELFK E EGE +E        D + I +  + +++  E   +   +E LS
Sbjct: 965  LSAILKFGAEELFK-EPEGEEQEPQ----EMDIDEILKRAETHEN--EPGPLTVGDELLS 1017

Query: 1285 SFKVAQYVVREEDKIE-EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
             FKVA +   +ED IE E ER     EE +  D   +L     +++ E++   L + +  
Sbjct: 1018 QFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM-LPRMRNC 1076

Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
             KQ+++N    E + ++S    GS     D D   EG+R  KR     + + +P      
Sbjct: 1077 AKQISFN--GSEGRRSRSRRYSGS-----DSDSISEGKRPKKR----GRPRTIP------ 1119

Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMP 1430
                 + GF+  + + F+ +  ++G P
Sbjct: 1120 --RENIKGFSDAEIRRFIKSYKKFGGP 1144


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score =  526 bits (1354), Expect = e-148
 Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)

Query: 549  EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
            EF+VK+   SY HC WA    LE    +  +  + K                      ++
Sbjct: 825  EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863

Query: 609  VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 664
             ++   +E+E++ +     P+++ V RI++   S D +G    HYLVKW  LPY+ STWE
Sbjct: 864  GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919

Query: 665  E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
                 D+  I E+E+           +M  +P   R  +              P  D   
Sbjct: 920  RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954

Query: 721  KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
            K E+   +       L  YQLEG+NWL F+W    + ILADEMGLGKTIQ+I FLY +Y 
Sbjct: 955  KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012

Query: 781  EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 837
            +G   GPFLV APLSTI NWEREF+ W  +  VV Y G + SR  I+  E  F+D     
Sbjct: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070

Query: 838  IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
            IKG             KFH ++T++E+I  D   L +I W C+V+DEAHRLKN   K   
Sbjct: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119

Query: 898  VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 957
             L    ++HK+LLTGTPLQN +EELF LL+FL P RF +   F++EF D+  E+Q++KL 
Sbjct: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179

Query: 958  DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1016
             +L P MLRRLK DV KN+  K E I+ VEL+ +QKKYY+ IL +NF  L+  GG  N  
Sbjct: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239

Query: 1017 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1069
            +LLN MM+L+KCCNHPYL   A         E+    S  ++  A+I+++GKL+L+ K+L
Sbjct: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299

Query: 1070 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1129
             KLK  GHRVLIFSQM + LD+LED+L    Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359

Query: 1130 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1189
            F FLL TRAGGLGINL  ADT IIFDSDWNP ND+QA +R HRIGQ+  V IYR +TR S
Sbjct: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419

Query: 1190 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1244
             E  +   A  K+ L   V++   G +  +     +SK+E++D+L+ G      DE +  
Sbjct: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479

Query: 1245 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1302
            +K  EED   I         LL R    T +++ +      S+F  A +V         +
Sbjct: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525

Query: 1303 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1356
            +          DP++W+K  +    + + D+    G+        RVRKQ     A +ED
Sbjct: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571

Query: 1357 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1383
            +  + S+    SEE+      RP+ + Q
Sbjct: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599



 Score = 39.7 bits (91), Expect = 0.030
 Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 17/210 (8%)

Query: 1526 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1583
            K+ S+A    K      E      P T K P  P  P EK     TP  K   ++  +KP
Sbjct: 644  KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703

Query: 1584 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642
            +   S + +K+       S    L +   P   P EDE PGV    +     R  + K  
Sbjct: 704  DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV----QKRRSSRQVKRKRY 759

Query: 1643 TESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDE----PRSNGRR 1698
            TE    +  +E+  D           T    ++E V  +     GP  E     RS  ++
Sbjct: 760  TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAE-----GPVVEKIMSSRSVKKQ 814

Query: 1699 EEKTEKPRF-MFNIADGGFTELHTLWQNEE 1727
            +E  E+     F +    F+ LH  W + E
Sbjct: 815  KESGEEVEIEEFYVKYKNFSYLHCQWASIE 844



 Score = 32.7 bits (73), Expect = 3.7
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 254 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 310
           P    + KE K P   +  K+P++P   K+ + K   P K K       +K   +  +  
Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711

Query: 311 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 370
            + ++G    +E SDLD     S     D     +K +  R  ++K+          +EE
Sbjct: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771

Query: 371 VDGYETDHQD 380
            D  +   +D
Sbjct: 772 ADDADAAGRD 781


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
            sapiens]
          Length = 2302

 Score =  514 bits (1325), Expect = e-145
 Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)

Query: 549  EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
            EFFVK+   SY HC WA   QLE    +  +  + K  M                     
Sbjct: 388  EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426

Query: 609  VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 663
             +  H+   +E+ +     P+++ V RI+  +HS+DK       +YLVKW  LPY+ STW
Sbjct: 427  AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482

Query: 664  E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 722
            E +++++  +  E K+   RH EL   +   +P+    KK EL  +             Y
Sbjct: 483  ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526

Query: 723  ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
            + +          L  YQLEG+NWL F+W    + ILADEMGLGKTIQ+I FL  +Y  G
Sbjct: 527  KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578

Query: 783  HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842
               GPFLV APLSTI NWEREF  W  +   + Y G   SR +I++ E   +D+  +   
Sbjct: 579  -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636

Query: 843  KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 902
             A+        KF  L+T++E+I  D   L  I W C+++DEAHRLKN   K    L   
Sbjct: 637  GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688

Query: 903  KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 962
             ++HK+LLTGTPLQN +EELF LL+FL P +F +   FL++F D+  E+Q++KL  +L P
Sbjct: 689  DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748

Query: 963  HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1020
             MLRRLK DV KN+  K E I+ VEL+ +QKKYY+ IL +NF  L S+G G  N  +LLN
Sbjct: 749  MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807

Query: 1021 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
             MM+L+KCCNHPYL   A         E+  +    +   A+++S+GKL+L+ K+L KLK
Sbjct: 808  TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867

Query: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
              GH+VLIFSQM + LD+LED+L    Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 868  AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927

Query: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
            L TRAGGLGINL  ADT IIFDSDWNP ND+QA +R HRIGQ+  V +YR +TR S E  
Sbjct: 928  LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987

Query: 1194 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1246
            +   A  K+ L   V+     R G  +     SK+E++D+L+ G      +E++  +K  
Sbjct: 988  MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047

Query: 1247 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
            EED   I         LL R    T +++ +      S+F  A +V  E      ++   
Sbjct: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090

Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1358
                   DP++W+K  +      + DL  +L   K        RVRKQ  +    ++D  
Sbjct: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135

Query: 1359 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
               +    S+ E ED DERP  RR  +       D
Sbjct: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
            sapiens]
          Length = 2715

 Score =  514 bits (1325), Expect = e-145
 Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)

Query: 550  FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 609
            F+VK+   SY HC WA   +LE    +  +  + +N   +   +                
Sbjct: 318  FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361

Query: 610  KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 664
                + E +E  +     P+++ V RI+   H+ D +      HYLVKW  LPY++STWE
Sbjct: 362  ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413

Query: 665  EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 724
             +E                       DPA+ ++++  +  L        P +D   K E 
Sbjct: 414  LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451

Query: 725  QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784
               +       L  YQLEG+NWL F+W    + ILADEMGLGKTIQ+I FL  ++  G  
Sbjct: 452  SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508

Query: 785  KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 841
             GPFL+ APLSTI NWEREF+ W  +   + Y G + SR +I++ E  + D   N + G 
Sbjct: 509  HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566

Query: 842  KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
                        KFHV++T++E+I  D   L  I W+C+++DEAHRLKN   K    L  
Sbjct: 567  ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616

Query: 902  YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 961
              ++HK+LLTGTPLQN++EELF LLNFL P +F +   FLEEF D+  E+Q+KKL  +L 
Sbjct: 617  MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676

Query: 962  PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1020
            P MLRRLK DV KN+  K E I+ VEL+ +QKKYY+ IL +NF  L       N  +L+N
Sbjct: 677  PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736

Query: 1021 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
             MM+L+KCCNHPYL   A  +         SP  P   ++  A+I+++GKL+L+ K+L K
Sbjct: 737  TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L   GH+VLIFSQM + LD+LED+L    Y YERIDG + G LRQ AIDRF  P + +F 
Sbjct: 795  LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLL TRAGGLGINL  ADT IIFDSDWNP ND+QA +R HRIGQ+  V +YR +TR S E
Sbjct: 855  FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914

Query: 1192 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1247
              +   A  K+ L   V+    R G  +    +SK E++D+L+ G      DE +  +K 
Sbjct: 915  REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973

Query: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1307
                   +  E I ++L R    T    +Q+  +  S+F  A +V         ++    
Sbjct: 974  -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018

Query: 1308 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1362
                  DP++W+K      L    + ++E L  +     RVRKQ  + ++ +ED+    E
Sbjct: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067

Query: 1363 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
            +S    E D D DERP       R+L ++  + L     RV  N+ + G+  R +    +
Sbjct: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118

Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1470
               +W +  +D    + + R L     K +K    +  F+  L  P  DG
Sbjct: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165



 Score = 33.1 bits (74), Expect = 2.8
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 49  KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 100
           KRKR PK+ KE +  K  K+ K   E +      + R+  E+ G++          +   
Sbjct: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178

Query: 101 RKRRRKHREKKEKKTKRRKKGE 122
            K R+  +E+     +++KKG+
Sbjct: 179 TKSRKASKEQGPTPVEKKKKGK 200



 Score = 31.6 bits (70), Expect = 8.1
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 49  KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 108
           ++ + PKK KE+K  K +   K+  +    S   E +EK     S   T   +  + +  
Sbjct: 131 RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGP 190

Query: 109 EKKEKKTKRRKKGE 122
              EKK K ++K E
Sbjct: 191 TPVEKKKKGKRKSE 204


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score =  505 bits (1300), Expect = e-142
 Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)

Query: 549  EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
            EFFVK+   SY HC WA E QL     +  +  Q+K                  +   R+
Sbjct: 715  EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753

Query: 609  VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 662
             +  H+ A+MEE+ +     P+++ V R++  S   DK       +YLVKW  LPY+ ST
Sbjct: 754  AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809

Query: 663  WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 719
            WE ++++++ + EE +Q        +    P   R           D PPS+     D +
Sbjct: 810  WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851

Query: 720  VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 779
              Y+         G  L  YQLEGLNWL F+W    + ILADEMGLGKTIQ+I FLY + 
Sbjct: 852  RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903

Query: 780  KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839
              G  +GPFL+ APLSTI NWEREF+ W     VV Y G   SR +I++ E  F D+  +
Sbjct: 904  LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961

Query: 840  GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899
              + A++        F  ++T++E+I      L +I W C+++DEAHRLKN   K    L
Sbjct: 962  IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013

Query: 900  NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 959
                ++HK+LLTGTPLQN +EELF LL+FL P RF +   F++EF D+  E+Q++KL  +
Sbjct: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1018
            L P MLRRLK DV K +  K E I+ VEL+ +QKKYY+ IL +NF  L+   G   V +L
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133

Query: 1019 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
            +N MM+L+KCCNHPYL   A         ++    +  +   A+I+S+GKL+L+ K+L K
Sbjct: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            +K  GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F 
Sbjct: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLL TRAGGLGINL  ADT IIFDSDWNP ND+QA +R HRIGQ   V +YR VTR S E
Sbjct: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1245
              +   A  K+ L   V++   G ++       +SK+E++D+L+ G    + ++E+EG  
Sbjct: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373

Query: 1246 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1304
              EED   I         LL R +  T +++ +      S+F  A +V         ++ 
Sbjct: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418

Query: 1305 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1362
                     DP++W+K  +      +    RN  +    R+RKQ     A +++    S 
Sbjct: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468

Query: 1363 YSVGSEEEDEDFDERPEGRRQSKR 1386
                  E + + DE+P+ RR   R
Sbjct: 1469 ------EAESEGDEKPKLRRPCDR 1486



 Score = 32.3 bits (72), Expect = 4.8
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 1516 ELMPDPSADSKRSSRASSPTKTSPTTP-------EASATNSPCTSKPATPAPSEKGEGIR 1568
            E   D  +DS+RSS +S  + +S ++         +S+++S C+S  ++ + S       
Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188

Query: 1569 TPLEKEEAENQEEKPEK 1585
            +    EE+++ EE+ +K
Sbjct: 2189 SSSSSEESDSDEEEAQK 2205



 Score = 31.6 bits (70), Expect = 8.1
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 1215 SKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDT 1274
            S + S S           +EE   DE E + +E  + +  YD E++A  L   QD T+D+
Sbjct: 2175 SSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVAS-LSTTQDETQDS 2233

Query: 1275 DVQN 1278
               N
Sbjct: 2234 FQMN 2237


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score =  444 bits (1141), Expect = e-124
 Identities = 275/798 (34%), Positives = 436/798 (54%), Gaps = 65/798 (8%)

Query: 684  RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
            + LI   D    R  +++ +EL  +   S  T++  +++E  P ++   GG L  YQ+ G
Sbjct: 136  QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190

Query: 744  LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
            LNWL   +  G + ILADEMGLGKT+QTI  L  L    +  GP +V  P ST+ NW  E
Sbjct: 191  LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250

Query: 804  FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
            F+ W P   V+ + GDKD+RA          D  + G             ++ V +TSYE
Sbjct: 251  FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291

Query: 864  LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
            ++  +++      W  LV+DEAHR+KN +SK   ++  +K  ++LLLTGTPLQNNL EL+
Sbjct: 292  MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351

Query: 924  HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
             LLNFL P+ FN+ + F   F     +  +  +++LH +L P +LRR+K DV K++P K 
Sbjct: 352  ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411

Query: 981  ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
            E+ + + LS MQ+++Y  IL ++ + LNS G  +++ LLNI+M L+KCCNHPYLF  A  
Sbjct: 412  EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469

Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
              P  P    E   ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+  + G
Sbjct: 470  -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526

Query: 1101 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNP 1160
            Y+Y R+DG      R+EAI+ FNAP + +F F+LSTRAGGLGINLA+AD VI++DSDWNP
Sbjct: 527  YEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 586

Query: 1161 HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG 1218
              D+QA  RAHRIGQ   V ++R +T  +VEERI + A+ K+ L  +V++ G  +  ++ 
Sbjct: 587  QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 646

Query: 1219 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1278
             ++K+E+  +++ G   +F  +      E+ ++++    +  A + +R Q   E     +
Sbjct: 647  KLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGE----SS 702

Query: 1279 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR--- 1335
            +  +    + + Y    ED     E++ +   E ++P   E+   +  +    +  R   
Sbjct: 703  LRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSE 759

Query: 1336 -NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDEDFDERPEGRRQS 1384
              + K  R  KQ N  D            E +      ++G +   + D       +R+ 
Sbjct: 760  PKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREE 819

Query: 1385 KRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGMPPQDAFTTQWLV 1441
            ++++  +  +PL P        +   GF     R    F+ A  ++G    D      + 
Sbjct: 820  QKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN-----IA 872

Query: 1442 RDLRGKTEKEFKAYVSLF 1459
            R++ GK+ +E   Y ++F
Sbjct: 873  REVEGKSPEEVMEYSAVF 890


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score =  435 bits (1118), Expect = e-121
 Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)

Query: 684  RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
            + LI   D    R  +++ +EL  +   S  T++  +++E  P ++   GG L  YQ+ G
Sbjct: 136  QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190

Query: 744  LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
            LNWL   +  G + ILADEMGLGKT+QTI  L  L    +  GP +V  P ST+ NW  E
Sbjct: 191  LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250

Query: 804  FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
            F+ W P   V+ + GDKD+RA          D  + G             ++ V +TSYE
Sbjct: 251  FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291

Query: 864  LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
            ++  +++      W  LV+DEAHR+KN +SK   ++  +K  ++LLLTGTPLQNNL EL+
Sbjct: 292  MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351

Query: 924  HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
             LLNFL P+ FN+ + F   F     +  +  +++LH +L P +LRR+K DV K++P K 
Sbjct: 352  ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411

Query: 981  ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
            E+ + + LS MQ+++Y  IL ++ + LNS G  +++ LLNI+M L+KCCNHPYLF  A  
Sbjct: 412  EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469

Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
              P  P    E   ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+  + G
Sbjct: 470  -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526

Query: 1101 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1148
            Y+Y R+DG      R+            EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 527  YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586

Query: 1149 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1208
            D VI++DSDWNP  D+QA  RAHRIGQ   V ++R +T  +VEERI + A+ K+ L  +V
Sbjct: 587  DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 1209 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1266
            ++ G  +  ++  ++K+E+  +++ G   +F  +      E+ ++++    +  A + +R
Sbjct: 647  IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706

Query: 1267 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1326
             Q   E     ++  +    + + Y    ED     E++ +   E ++P   E+   +  
Sbjct: 707  LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759

Query: 1327 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1372
            +    +  R     + K  R  KQ N  D            E +      ++G +   + 
Sbjct: 760  DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819

Query: 1373 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1429
            D       +R+ ++++  +  +PL P        +   GF     R    F+ A  ++G 
Sbjct: 820  DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877

Query: 1430 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1459
               D      + R++ GK+ +E   Y ++F
Sbjct: 878  DDIDN-----IAREVEGKSPEEVMEYSAVF 902


>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5 [Homo sapiens]
          Length = 1052

 Score =  422 bits (1085), Expect = e-117
 Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)

Query: 698  YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 754
            Y+ ++ E + D      SS   +   ++E  P ++    G L  YQ+ GLNWL   +  G
Sbjct: 141  YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198

Query: 755  TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 814
             + ILADEMGLGKT+QTI  L  +    +  GP +V  P ST+ NW  EF+ W P    V
Sbjct: 199  INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258

Query: 815  TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 874
               GDK+ RA       +F  + +  G+            + V +TSYE++  +++    
Sbjct: 259  CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299

Query: 875  IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
              W  LV+DEAHR+KN +SK   ++  +K  ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 300  FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359

Query: 935  NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 991
            N+ + F   F     +  +  +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 360  NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419

Query: 992  QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1051
            Q+++Y  IL ++ + LNS G  +++ LLNI+M L+KCCNHPYLF   A   P   +  + 
Sbjct: 420  QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477

Query: 1052 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1111
               L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+  +  Y+Y R+DG   
Sbjct: 478  ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534

Query: 1112 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1171
               RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP  D+QA  RAH
Sbjct: 535  HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594

Query: 1172 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1229
            RIGQ   V ++RF+T  +VEERI + A+ K+ L  +V++ G  +      + K E+  ++
Sbjct: 595  RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654

Query: 1230 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1286
            + G   +F  + E E  +ED          I  +L+R    T +     MNE LS     
Sbjct: 655  RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698

Query: 1287 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1336
             +  + +  E  +   E E  ++++       ++P   E+   +  +    +  R     
Sbjct: 699  SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758

Query: 1337 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1388
              K  R  KQ N  D      +  +  + E     +         PE     + Q + QL
Sbjct: 759  APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818

Query: 1389 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1445
            + ++ + L          +   GF   N R    F+ A  +WG         + + R++ 
Sbjct: 819  KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873

Query: 1446 GKTEKEFKAYVSLF 1459
            GKT +E   Y ++F
Sbjct: 874  GKTPEEVIEYSAVF 887


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
            sapiens]
          Length = 897

 Score =  410 bits (1053), Expect = e-114
 Identities = 257/667 (38%), Positives = 376/667 (56%), Gaps = 47/667 (7%)

Query: 732  TGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVS 791
            TG  L  YQLEG+NWL   +      IL DEMGLGKT QTI     L    + +GPFL+ 
Sbjct: 42   TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLIL 101

Query: 792  APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851
             PLS + NW+ E Q +AP    VTY GDK+ RA ++++                 +K+E+
Sbjct: 102  CPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------------LKQES 144

Query: 852  QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
              +FHVLLT+YE+   D + L S  W+ LVVDEAHRLKN  S   + L+ + +   LLLT
Sbjct: 145  --RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLT 202

Query: 912  GTPLQNNLEELFHLLNFLTPERFNNLE--GFLEEFADISKEDQ-IKKLHDLLGPHMLRRL 968
            GTP+QN+L+EL+ LL+F+ P+ F+  E   F++ + DI KE +   +LH LL P +LRR+
Sbjct: 203  GTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV 262

Query: 969  KADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKC 1028
            KA+V   +P KTE+++   +S +QKKYYK IL ++ +A  +     +V L NI+  L+KC
Sbjct: 263  KAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETA-KKVKLQNILSQLRKC 321

Query: 1029 CNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKM 1088
             +HPYLF     E  ++      G  L ++SGKL LL K+L  L   GHRVL+FSQMT+M
Sbjct: 322  VDHPYLFDGVEPEPFEV------GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQM 375

Query: 1089 LDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ-FCFLLSTRAGGLGINLAT 1147
            LD+L+D++DY GY YER+DG + G  R  AI  F   G Q  F FLLSTRAGG+G+NL  
Sbjct: 376  LDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQPIFVFLLSTRAGGVGMNLTA 432

Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
            ADTVI  DSD+NP ND+QA +RAHRIGQ   V + R + R +VEE + + A  K+ LT++
Sbjct: 433  ADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNM 492

Query: 1208 VVRPG---LGS-KAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVI--HYDNEAIA 1261
            ++  G   LG+ K  + +  +L +ILKFG ++L   E    ++ +  S++    D + ++
Sbjct: 493  IIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVS 552

Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
              L   +  + D +    + YL   K       +ED      R+  +Q  N+     EK 
Sbjct: 553  DALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKED------RKSFEQLVNLQKTLLEKA 606

Query: 1322 LRHHYEQQQED--LARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPE 1379
             +     + +   L   L +G   RK+V   +  ++ Q  + E +       E+   + E
Sbjct: 607  SQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKE 666

Query: 1380 GRRQSKR 1386
                 K+
Sbjct: 667  EAEHKKK 673


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score =  407 bits (1045), Expect = e-113
 Identities = 306/957 (31%), Positives = 463/957 (48%), Gaps = 120/957 (12%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL          E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261

Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
                  D+E + +++ R++   D     D+    E   + K    ++ E    +E+   I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314

Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
            IK +  V+        R   E+++E +    G+G R RK+V+Y+D+  E Q  ++  ++ 
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362

Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
               E+   +E  E  RQ K   + ++D       +  G +       +R +        +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412

Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486
             G PP +  +             K+ K  V   +++    G   SE F     R+ L   
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1466

Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546
              L R  V     KK++E    +   S+ +L  D     + +   +   + S    ++  
Sbjct: 1467 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1521

Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606
              S  TS             +R  +EKE+    EE  E+     E  E+E+ +      L
Sbjct: 1522 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1568

Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663
            G     RK   +D + G  G   P    RG R K        E  +E+   G    E
Sbjct: 1569 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1615



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score =  405 bits (1040), Expect = e-112
 Identities = 306/957 (31%), Positives = 461/957 (48%), Gaps = 123/957 (12%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL          E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261

Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
                  D+E + +++ R++   D     D+    E   + K    ++ E    +E+   I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314

Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
            IK +  V+        R   E+++E +    G+G R RK+V+Y+D+  E Q  ++     
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358

Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
               E+   +E  E  RQ K   + ++D       +  G +       +R +        +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409

Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486
             G PP +  +             K+ K  V   +++    G   SE F     R+ L   
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1463

Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546
              L R  V     KK++E    +   S+ +L  D     + +   +   + S    ++  
Sbjct: 1464 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1518

Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606
              S  TS             +R  +EKE+    EE  E+     E  E+E+ +      L
Sbjct: 1519 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1565

Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663
            G     RK   +D + G  G   P    RG R K        E  +E+   G    E
Sbjct: 1566 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1612



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score =  403 bits (1035), Expect = e-111
 Identities = 305/958 (31%), Positives = 464/958 (48%), Gaps = 121/958 (12%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL          E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261

Query: 1250 SSVIHYDNEAIARLLDRNQDATE---DTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
                  D+E + +++ R+++  +     D+    E   + K    ++ E+    E+   I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED----ELPSWI 1314

Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
            IK +  V+        R   E+++E +    G+G R RK+V+Y+D+  E Q  ++  ++ 
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362

Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
               E+   +E  E  RQ K   + ++D       +  G +       +R +        +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412

Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485
             G PP +  +             K+ K  V   +++     G   SE F     R+ L  
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1466

Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545
               L R  V     KK++E    +   S+ +L  D     + +   +   + S    ++ 
Sbjct: 1467 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1521

Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605
               S  TS             +R  +EKE+    EE  E+     E  E+E+ +      
Sbjct: 1522 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1568

Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663
            LG     RK   +D + G  G   P    RG R K        E  +E+   G    E
Sbjct: 1569 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1616



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score =  402 bits (1033), Expect = e-111
 Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)

Query: 660  QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
            +S  EE + +  E +E ++S  +  E  +  DP      +K  K++              
Sbjct: 632  RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691

Query: 706  --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
                 G  S  T    +    + +      GTL  YQL+GL W+   +    + ILADEM
Sbjct: 692  QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751

Query: 764  GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
            GLGKTIQTI  +  L +     GP+L+  PLST+ NW  EF  WAP    ++Y G    R
Sbjct: 752  GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811

Query: 824  AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
              +           ++ GK            F+VLLT+YE I  D+  L  IRW  ++VD
Sbjct: 812  RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851

Query: 884  EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
            E HR+KN+  K  +VLN  Y    ++LLTGTPLQN L EL+ LLNFL P  F +   F +
Sbjct: 852  EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911

Query: 943  EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
             F           D+++E+ I   ++LH +L P +LRRLK +V   +P K E +++ ++S
Sbjct: 912  WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971

Query: 990  PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
             +QK  Y++     IL  +    + +G G   +L+N +M L+K CNHPY+F     +  E
Sbjct: 972  ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031

Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
                 +G   G  L ++SGK  LL ++L KL+   HRVL+F QMT ++ ++ED+  +  +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091

Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
             Y R+DG      R   + +FN PG+Q F FLLSTRAGGLG+NL  ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151

Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
             D+QA  RAHRIGQ N+V + R  T  SVEE+I   AK K+ +   V++ G+  +  S  
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211

Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
            ++   L  IL          E+E EN+EED      D+E + +++ R +   D     D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258

Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
                E   + K    ++ E    +E+   IIK +  V+        R   E+++E +   
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303

Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396
             G+G R R+ V+Y+DA  E Q  ++        ED + +E  E  R  KR+ R   DK  
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354

Query: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456
                                ++    A  R G PP +  +          K  K+  A +
Sbjct: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391

Query: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516
               + +    G   SE F     R+ L     L R  V     KK++E    +   S+ +
Sbjct: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448

Query: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576
            L  D       +   +   + S    ++    S   S     A  E+ E      E+EE 
Sbjct: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506

Query: 1577 ENQEEKPEKNSRIGEKMETEAD 1598
            E + E   K+ ++  K+  + D
Sbjct: 1507 EEESESEAKSVKVKIKLNKKDD 1528


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score =  401 bits (1030), Expect = e-111
 Identities = 306/958 (31%), Positives = 461/958 (48%), Gaps = 124/958 (12%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL          E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261

Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
                  D+E + +++ R++   D     D+    E   + K    ++ E    +E+   I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314

Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
            IK +  V+        R   E+++E +    G+G R RK+V+Y+D+  E Q  ++     
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358

Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
               E+   +E  E  RQ K   + ++D       +  G +       +R +        +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409

Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485
             G PP +  +             K+ K  V   +++     G   SE F     R+ L  
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1463

Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545
               L R  V     KK++E    +   S+ +L  D     + +   +   + S    ++ 
Sbjct: 1464 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1518

Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605
               S  TS             +R  +EKE+    EE  E+     E  E+E+ +      
Sbjct: 1519 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1565

Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663
            LG     RK   +D + G  G   P    RG R K        E  +E+   G    E
Sbjct: 1566 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1613



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score =  401 bits (1030), Expect = e-111
 Identities = 269/778 (34%), Positives = 398/778 (51%), Gaps = 98/778 (12%)

Query: 660  QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
            +S  EE + +  E +E ++S  +  E  +  DP      +K  K++              
Sbjct: 632  RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691

Query: 706  --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
                 G  S  T    +    + +      GTL  YQL+GL W+   +    + ILADEM
Sbjct: 692  QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751

Query: 764  GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
            GLGKTIQTI  +  L +     GP+L+  PLST+ NW  EF  WAP    ++Y G    R
Sbjct: 752  GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811

Query: 824  AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
              +           ++ GK            F+VLLT+YE I  D+  L  IRW  ++VD
Sbjct: 812  RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851

Query: 884  EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
            E HR+KN+  K  +VLN  Y    ++LLTGTPLQN L EL+ LLNFL P  F +   F +
Sbjct: 852  EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911

Query: 943  EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
             F           D+++E+ I   ++LH +L P +LRRLK +V   +P K E +++ ++S
Sbjct: 912  WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971

Query: 990  PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
             +QK  Y++     IL  +    + +G G   +L+N +M L+K CNHPY+F     +  E
Sbjct: 972  ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031

Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
                 +G   G  L ++SGK  LL ++L KL+   HRVL+F QMT ++ ++ED+  +  +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091

Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
             Y R+DG      R   + +FN PG+Q F FLLSTRAGGLG+NL  ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151

Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
             D+QA  RAHRIGQ N+V + R  T  SVEE+I   AK K+ +   V++ G+  +  S  
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211

Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
            ++   L  IL          E+E EN+EED      D+E + +++ R +   D     D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258

Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
                E   + K    ++ E    +E+   IIK +  V+        R   E+++E +   
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303

Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDK 1394
             G+G R R+ V+Y+DA  E Q  ++        ED + +E  E  R  KR+ R   DK
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK 1354


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  393 bits (1009), Expect = e-108
 Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL+   ++              
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271

Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
                     +  D  E   KEED      D+E + +++ R++   D     D+    E  
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328

Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
             + K    ++ E    +E+   IIK +  V+        R   E+++E +    G+G R 
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373

Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
            RK+V+Y+D+  E Q  ++        E+   +E  E  RQ K   + ++D       +  
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419

Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
            G +       +R +        + G PP +  +             K+ K  V   +++ 
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473

Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
                G   SE F     R+ L     L R  V     KK++E    +   S+ +L  D  
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530

Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
               + +   +   + S    ++    S  TS             +R  +EKE+    EE 
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575

Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642
             E+     E  E+E+ +      LG     RK   +D + G  G   P    RG R K  
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625

Query: 1643 TESTPGERGEEKPLDGQEHRE 1663
                  E  +E+   G    E
Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score =  393 bits (1009), Expect = e-108
 Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL+   ++              
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271

Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
                     +  D  E   KEED      D+E + +++ R++   D     D+    E  
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328

Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
             + K    ++ E    +E+   IIK +  V+        R   E+++E +    G+G R 
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373

Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
            RK+V+Y+D+  E Q  ++        E+   +E  E  RQ K   + ++D       +  
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419

Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
            G +       +R +        + G PP +  +             K+ K  V   +++ 
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473

Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
                G   SE F     R+ L     L R  V     KK++E    +   S+ +L  D  
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530

Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
               + +   +   + S    ++    S  TS             +R  +EKE+    EE 
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575

Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642
             E+     E  E+E+ +      LG     RK   +D + G  G   P    RG R K  
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625

Query: 1643 TESTPGERGEEKPLDGQEHRE 1663
                  E  +E+   G    E
Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score =  388 bits (997), Expect = e-107
 Identities = 310/1006 (30%), Positives = 465/1006 (46%), Gaps = 155/1006 (15%)

Query: 734  GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
            G L  YQ++GL WL   +    + ILADEMGLGKTIQTI  +  L +     GPFL+  P
Sbjct: 752  GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811

Query: 794  LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
            LST+ NW  EF  WAP    V+Y G   +R                   +AF  +  +  
Sbjct: 812  LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851

Query: 854  KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
            KF+VLLT+YE I  D+  L  IRW  ++VDE HR+KN+  K  +VLN  Y    +LLLTG
Sbjct: 852  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911

Query: 913  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 912  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971

Query: 960  LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
            L P +LRRLK +V   +P K E +++ ++S +Q+  Y++     +L  +    + +G G 
Sbjct: 972  LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031

Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
              +L+N +M L+K CNHPY+F     +  E      G  +G  L ++SGK  LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
            L+   H+VL+F QMT ++ ++ED+  Y G+KY R+DG      R   +  FN PG++ F 
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
            FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA  RAHRIGQ N+V + R  T  SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211

Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL+   ++              
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271

Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
                     +  D  E   KEED      D+E + +++ R++   D     D+    E  
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328

Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
             + K    ++ E    +E+   IIK +  V+        R   E+++E +    G+G R 
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373

Query: 1344 RKQVNYNDAAQEDQ-----------DNQSEYSVGSE--------------EEDEDFDERP 1378
            RK+V+Y+D+  E Q           D  S  + G +               E+   +E  
Sbjct: 1374 RKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIE 1433

Query: 1379 EGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQ 1438
            E  RQ K   + ++D       +  G +       +R +        + G PP +  +  
Sbjct: 1434 EEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN 1486

Query: 1439 WLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSRQQVLTRIGVMSL 1497
                       K+ K  V   +++     G   SE F     R+ L     L R  V   
Sbjct: 1487 ------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF- 1539

Query: 1498 VKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPAT 1557
              KK++E    +   S+ +L  D     + +   +   + S    ++    S  TS    
Sbjct: 1540 --KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIVLQSVFTS---- 1591

Query: 1558 PAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPL 1617
                     +R  +EKE+    EE  E+     E  E+E+ +      LG     RK   
Sbjct: 1592 ---------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLG-----RKEKA 1637

Query: 1618 EDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1663
            +D + G  G   P    RG R K        E  +E+   G    E
Sbjct: 1638 QDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1678



 Score = 38.5 bits (88), Expect = 0.067
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
            TE   K ENE   KE    ++  D E   +L+D+ +D       + TD  V N+ E +  
Sbjct: 511  TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570

Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
             K AQ    ++ K ++ + E  + Q   + PD  E L              H E  +   
Sbjct: 571  HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629

Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
              +  K  ++   +  N   +    + SE S   EEE+E+ +E+P+  +     +  +K 
Sbjct: 630  GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689

Query: 1394 KPLP 1397
             P P
Sbjct: 690  IPDP 693



 Score = 32.0 bits (71), Expect = 6.2
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
            +K++AEN E +       GE ++ E    S  P     +E  KI    + P    +   +
Sbjct: 585  KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643

Query: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
            E  PGY    R D E+S +E    E  EE+P       L  +E ++ P+ ++ D+ +
Sbjct: 644  EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score =  290 bits (742), Expect = 1e-77
 Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)

Query: 711  PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 770
            P    N   V ++    F   TGG +  YQ+EG+ WLR  W  G + ILADEMGLGKT+Q
Sbjct: 201  PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257

Query: 771  TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
             I  +  + + G   GPFLV  PLST+ NW  EF+ + P    + Y G ++ R  +  N 
Sbjct: 258  CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316

Query: 831  FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
            +                KR+  ++ H V++TS+E+   D+ AL    W  L+VDE HR+K
Sbjct: 317  Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360

Query: 890  NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 949
            N + +  R L  +  D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+ 
Sbjct: 361  NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419

Query: 950  -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
                 ED I K         LH +L P +LRRLK+DV   +P K E++V   LS  Q+ +
Sbjct: 420  LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479

Query: 996  YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1034
            Y  I+ R    +                    +R   N   + +   +L+K  +   P +
Sbjct: 480  YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539

Query: 1035 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1074
                A+    +P    E    +K    +MLL+K                       +L  
Sbjct: 540  DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596

Query: 1075 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1117
               + LI  +M              ++M  +L+  +DY     + + R+DG ++ + R++
Sbjct: 597  NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656

Query: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
             +  FN    + F FL+STRAGGLGINL  ADTVII+DSDWNP +D+QA  R HRIGQ  
Sbjct: 657  NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715

Query: 1178 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1234
             V++YR VT  +++++I + A  K  L  L++      G ++G ++SK  LD   K   E
Sbjct: 716  PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773

Query: 1235 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1290
             L   + E E K     VI   ++ +  LLDR+    +      + E +  FK+ +
Sbjct: 774  LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  271 bits (692), Expect = 6e-72
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)

Query: 735  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554

Query: 795  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596

Query: 854  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655

Query: 911  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715

Query: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775

Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835

Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895

Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954

Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  271 bits (692), Expect = 6e-72
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)

Query: 735  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554

Query: 795  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596

Query: 854  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655

Query: 911  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715

Query: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775

Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 776  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835

Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 836  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895

Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954

Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform b [Homo sapiens]
          Length = 1026

 Score =  268 bits (684), Expect = 5e-71
 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)

Query: 735  TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
            +L  YQ  GLNWL      G + ILADEMGLGKTIQ I FL  LY+EG+  GP L+  P 
Sbjct: 496  SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554

Query: 795  STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
            STI NW RE  +W P   V+ Y G ++ R  IR N  S +ED                  
Sbjct: 555  STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596

Query: 854  KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
             ++V++T+Y      + D++    ++    + DE H LKN  S  ++ L     +++LLL
Sbjct: 597  -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655

Query: 911  TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
            TGTP+QNNL EL  LLNF+ P  F++    +               I ++++I     ++
Sbjct: 656  TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715

Query: 961  GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
             P +LRR+K +V K +P K + I    +S  Q++ Y  +  R  +++N+        + N
Sbjct: 716  KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773

Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
            +MM L+K  NHP L                    P     +P L     E          
Sbjct: 774  VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833

Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
                           LI  SGK  +L  +L +LK++G RV++FSQ T MLD+LE  L + 
Sbjct: 834  CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893

Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
             ++Y R+DG    + R   ID FN      F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 894  QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952

Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
            P+ND QA  R HR+GQ  +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 953  PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997


>gi|4557565 excision repair cross-complementing rodent repair
            deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score =  261 bits (666), Expect = 6e-69
 Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)

Query: 699  KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 758
            K+K+ +L+ D   S    D   K    P F+      L  YQ  G+ WL     Q    I
Sbjct: 476  KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529

Query: 759  LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 808
            L DEMGLGKTIQ I FL  L Y +  T+G         P ++  P + +  W +EF  W 
Sbjct: 530  LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589

Query: 809  PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 868
            P F V          AI+ E              K  K+ R+      +L+TSY  I + 
Sbjct: 590  PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631

Query: 869  QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 928
            Q  +    W  +++DE H+++N  +        ++  H+++L+G+P+QNNL EL+ L +F
Sbjct: 632  QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691

Query: 929  LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 973
            + P +   L  F+E+F+          +   Q+K        L D + P++LRR+K+DV 
Sbjct: 692  IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751

Query: 974  KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1029
             ++  P K E ++   L+  Q K Y+  +     +  LN      ++ + + ++ L+K C
Sbjct: 752  MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806

Query: 1030 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087
            NHP LF         LP    E       K SGK+++++ +L+   +QG RVL+FSQ  +
Sbjct: 807  NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866

Query: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
            MLD+LE FL  + Y Y ++DG  T A RQ  I R+N      F FLL+TR GGLG+NL  
Sbjct: 867  MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925

Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
            A+ V+I+D DWNP  D QA  RA RIGQ  +V +YR +T  ++EE+I      K  LT+ 
Sbjct: 926  ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985

Query: 1208 VVR 1210
            V++
Sbjct: 986  VLK 988



 Score = 32.7 bits (73), Expect = 3.7
 Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 34/156 (21%)

Query: 1551 CTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERL 1610
            C  + A  AP+        P+        + KP K +R+  K E             ++L
Sbjct: 290  CNKRAARKAPA--------PVTPPAPVQNKNKPNKKARVLSKKEERLKKHI------KKL 335

Query: 1611 EPRKIPLEDEVPGVPGEMEP-----EPGYRGDREKSATESTPGERGEEKPLDGQEHRERP 1665
            + R +  + +V G+P    P      P   GD E   +E  P E  EE      E  +  
Sbjct: 336  QKRALQFQGKV-GLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEE------EEDDEV 388

Query: 1666 EGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK 1701
            EG   DL        D EL+P P+      G+R++K
Sbjct: 389  EGAEADLSGDGT---DYELKPLPK-----GGKRQKK 416


>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
          Length = 712

 Score =  219 bits (557), Expect = 3e-56
 Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)

Query: 736  LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 783
            L  YQ EG  +L   +  G   IL D+MGLGKT+Q I FL + L+K+G            
Sbjct: 134  LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193

Query: 784  -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
                          K  FL+ APLS + NW+ E   W                       
Sbjct: 194  LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231

Query: 831  FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 890
              F    + G +K  ++ R  Q K  + LT+YE + +    L S+ W+ ++VDEAHR+KN
Sbjct: 232  -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290

Query: 891  NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 950
             +++   V+   K + ++ LTGT LQNN++EL+ ++++  P    +   F ++F+D  + 
Sbjct: 291  PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350

Query: 951  DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
             Q               +++L   +    LRR K  +   +P K + +V   L+  QK  
Sbjct: 351  GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410

Query: 996  YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1032
            Y+ +L      L                       NS G   +   L+ +  L+K  NH 
Sbjct: 411  YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470

Query: 1033 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
             L   A+                         K    A+E  +  K SGK+ +LQ++L  
Sbjct: 471  ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530

Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
             ++   +VL+FS  TK+LD+L+ +    G  Y R+DG      R + +  FN+      C
Sbjct: 531  CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590

Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
             L+ST AGGLG+N   A+ V++FD  WNP ND+QA  RA+RIGQ   V + R ++  +VE
Sbjct: 591  -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649

Query: 1192 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1245
            E   + Q+ K+++   H VV     +K    A   SK+   ++  FG   LFK  ++G  
Sbjct: 650  EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704

Query: 1246 KEED 1249
              +D
Sbjct: 705  LTKD 708


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,745,774
Number of Sequences: 37866
Number of extensions: 5265591
Number of successful extensions: 60917
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 1098
Number of HSP's that attempted gapping in prelim test: 35097
Number of HSP's gapped (non-prelim): 21425
length of query: 2000
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1883
effective length of database: 13,817,196
effective search space: 26017780068
effective search space used: 26017780068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 70 (31.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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