Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 52630322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52630322 chromodomain helicase DNA binding protein 3 isoform
2 [Homo sapiens]
(1966 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 4026 0.0
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 4008 0.0
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 3940 0.0
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 2704 0.0
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 2621 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 577 e-164
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 566 e-161
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 526 e-148
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 514 e-145
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 514 e-145
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 505 e-142
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 444 e-124
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 435 e-121
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 422 e-117
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 410 e-114
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 405 e-112
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 404 e-112
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 402 e-111
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 402 e-111
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 401 e-111
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 400 e-111
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 392 e-108
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 392 e-108
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 387 e-107
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 290 1e-77
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 268 5e-71
gi|4557565 excision repair cross-complementing rodent repair def... 261 6e-69
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 219 3e-56
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 4026 bits (10440), Expect = 0.0
Identities = 1966/1966 (100%), Positives = 1966/1966 (100%)
Query: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN
Sbjct: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
Query: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK
Sbjct: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
Query: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI
Sbjct: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
Query: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP
Sbjct: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
Query: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG
Sbjct: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
Query: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL
Sbjct: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
Query: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC
Sbjct: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
Query: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI
Sbjct: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
Query: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR
Sbjct: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
Query: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED
Sbjct: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
Query: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ
Sbjct: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
Query: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV
Sbjct: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK
Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG
Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
Query: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN
Sbjct: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
Query: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL
Sbjct: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG
Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR
Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI
Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK
Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG
Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL
Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK
Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP
Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE
Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
Query: 1621 VPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIADG 1680
VPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIADG
Sbjct: 1621 VPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIADG 1680
Query: 1681 GFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINE 1740
GFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINE
Sbjct: 1681 GFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINE 1740
Query: 1741 PFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFA 1800
PFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFA
Sbjct: 1741 PFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFA 1800
Query: 1801 EAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAA 1860
EAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAA
Sbjct: 1801 EAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAA 1860
Query: 1861 RLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQMP 1920
RLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQMP
Sbjct: 1861 RLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQMP 1920
Query: 1921 AGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 1966
AGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD
Sbjct: 1921 AGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 1966
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 4008 bits (10395), Expect = 0.0
Identities = 1966/2000 (98%), Positives = 1966/2000 (98%), Gaps = 34/2000 (1%)
Query: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN
Sbjct: 1 MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKEN 60
Query: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK
Sbjct: 61 KPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 120
Query: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI
Sbjct: 121 GEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI 180
Query: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP
Sbjct: 181 PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPP 240
Query: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG
Sbjct: 241 ALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLG 300
Query: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL
Sbjct: 301 GKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVL 360
Query: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC
Sbjct: 361 GCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSC 420
Query: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI
Sbjct: 421 PHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHI 480
Query: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR
Sbjct: 481 HCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPR 540
Query: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED
Sbjct: 541 PLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGED 600
Query: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ
Sbjct: 601 DGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQ 660
Query: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV
Sbjct: 661 STWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK
Sbjct: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG
Sbjct: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKG 840
Query: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN
Sbjct: 841 GKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLN 900
Query: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL
Sbjct: 901 GYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVL 1080
Query: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG
Sbjct: 1081 IFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGG 1140
Query: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR
Sbjct: 1141 LGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKR 1200
Query: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI
Sbjct: 1201 KMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAI 1260
Query: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK
Sbjct: 1261 ARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEK 1320
Query: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG
Sbjct: 1321 LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEG 1380
Query: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL
Sbjct: 1381 RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWL 1440
Query: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK
Sbjct: 1441 VRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKK 1500
Query: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP
Sbjct: 1501 KVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAP 1560
Query: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE
Sbjct: 1561 SEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDE 1620
Query: 1621 VPGVPGEMEPEPGYRGDREKS----------------------------------EDVKG 1646
VPGVPGEMEPEPGYRGDREKS EDVKG
Sbjct: 1621 VPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKG 1680
Query: 1647 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1706
DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW
Sbjct: 1681 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1740
Query: 1707 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1766
HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL
Sbjct: 1741 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1800
Query: 1767 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1826
EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV
Sbjct: 1801 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1860
Query: 1827 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1886
LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY
Sbjct: 1861 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1920
Query: 1887 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1946
PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL
Sbjct: 1921 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGAL 1980
Query: 1947 VSDGLDRKEPRAGEVICIDD 1966
VSDGLDRKEPRAGEVICIDD
Sbjct: 1981 VSDGLDRKEPRAGEVICIDD 2000
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 3940 bits (10219), Expect = 0.0
Identities = 1934/1968 (98%), Positives = 1934/1968 (98%), Gaps = 34/1968 (1%)
Query: 33 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 92
PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG
Sbjct: 92 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 151
Query: 93 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 152
SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS
Sbjct: 152 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 211
Query: 153 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 212
EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA
Sbjct: 212 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 271
Query: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS
Sbjct: 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331
Query: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 332
KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH
Sbjct: 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 391
Query: 333 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 392
SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII
Sbjct: 392 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 451
Query: 393 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 452
LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE
Sbjct: 452 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 511
Query: 453 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 512
DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI
Sbjct: 512 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 571
Query: 513 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 572
LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI
Sbjct: 572 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 631
Query: 573 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 632
FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT
Sbjct: 632 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 691
Query: 633 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 692
VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP
Sbjct: 692 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 751
Query: 693 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 752
AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA
Sbjct: 752 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 811
Query: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 812
QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY
Sbjct: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 871
Query: 813 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 872
VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL
Sbjct: 872 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 931
Query: 873 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 932
GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE
Sbjct: 932 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 991
Query: 933 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 992
RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ
Sbjct: 992 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 1051
Query: 993 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1052
KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG
Sbjct: 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1111
Query: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1112
GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG
Sbjct: 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1171
Query: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172
ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR
Sbjct: 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1231
Query: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232
IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG
Sbjct: 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1291
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1292
TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV
Sbjct: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1351
Query: 1293 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1352
VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA
Sbjct: 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1411
Query: 1353 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1412
AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF
Sbjct: 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1471
Query: 1413 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1472
NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE
Sbjct: 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1531
Query: 1473 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1532
TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS
Sbjct: 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1591
Query: 1533 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1592
SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK
Sbjct: 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1651
Query: 1593 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKS----------- 1641
METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKS
Sbjct: 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1711
Query: 1642 -----------------------EDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1678
EDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA
Sbjct: 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1771
Query: 1679 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1738
DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII
Sbjct: 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1831
Query: 1739 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1798
NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR
Sbjct: 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1891
Query: 1799 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1858
FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI
Sbjct: 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1951
Query: 1859 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 1918
AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ
Sbjct: 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 2011
Query: 1919 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 1966
MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD
Sbjct: 2012 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2059
Score = 33.9 bits (76), Expect = 1.6
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 233 PIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL 292
P P PP LPPPP PPP + G K+R + P +K+ K P
Sbjct: 74 PPPPPPPPPLPPPPP---PPPPDKDDIRLLPSALGVKKRKRGP-----KKQKENKPGKPR 125
Query: 293 KIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRP 352
K ++K+ F S+ E ES GS + GP R ++ K
Sbjct: 126 K--------RKKRDSEEEFGSERDEYREKSES---GGSEYGT-----GPGRKRRRKHREK 169
Query: 353 GRKKKK 358
KK K
Sbjct: 170 KEKKTK 175
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 424 EKEGVQWEAKEEEEEYEEEGEEEGEKE----EEDD 454
E+E + EEEEE EEEG+EE E+E +EDD
Sbjct: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDD 43
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 2704 bits (7008), Expect = 0.0
Identities = 1364/1960 (69%), Positives = 1566/1960 (79%), Gaps = 139/1960 (7%)
Query: 50 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 109
+K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++
Sbjct: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105
Query: 110 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 166
KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165
Query: 167 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 226
QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA
Sbjct: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219
Query: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286
V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G
Sbjct: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268
Query: 287 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 346
KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K
Sbjct: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321
Query: 347 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 406
+ R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370
Query: 407 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 466
DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426
Query: 467 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 522
ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V
Sbjct: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486
Query: 523 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 582
+P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543
Query: 583 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 642
RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603
Query: 643 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 702
KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK
Sbjct: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663
Query: 703 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 759
K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723
Query: 760 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 819
ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783
Query: 820 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 879
K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843
Query: 880 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 939
LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903
Query: 940 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 999
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963
Query: 1000 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1059
LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023
Query: 1060 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1119
GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083
Query: 1120 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1179
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV
Sbjct: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143
Query: 1180 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1239
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203
Query: 1240 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1261
+ E G+NK+ EDSSVIHYD+ AI+
Sbjct: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263
Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
+LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323
Query: 1322 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1374
LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF
Sbjct: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383
Query: 1375 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1431
+ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443
Query: 1432 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1491
QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503
Query: 1492 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1547
IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP +
Sbjct: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563
Query: 1548 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1593
P + EK G + P L++ E+E++ E P R E+
Sbjct: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
Query: 1594 ETEADAPSPAPSLGERLEPRKIPLEDEVP-------GVPGEMEPEPGYRGDREKSEDVKG 1646
ETE PSP E + P K + D++ G E+ P D K+E+ +
Sbjct: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKLELSLIHSRGDSSELRP------DDTKAEEKEP 1677
Query: 1647 DRELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIW 1706
+ G ++E G++E+K K +FMFNIADGGFTELHTLWQNEERAA+SSGK+ +IW
Sbjct: 1678 IETQQNGDKEED-DEGKKEDKKGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIW 1736
Query: 1707 HRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLL 1766
HRRHDYWLLAGIV HGYARWQDIQND ++ I+NEPFK+E +KGN+LEMKNKFLARRFKLL
Sbjct: 1737 HRRHDYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLL 1796
Query: 1767 EQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAV 1826
EQALVIEEQLRRAAYLN++Q+P HPAMAL+AR AE ECLAESHQHLSKESLAGNKPANAV
Sbjct: 1797 EQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAV 1856
Query: 1827 LHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAY 1886
LHKVLNQLEELLSDMKADVTRLP+ LSRIPP+AARLQMSERSILSRL ++ + P
Sbjct: 1857 LHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGD----PTI 1912
Query: 1887 PPGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFIT 1926
G + + Y F G NY+QMP G ++T
Sbjct: 1913 QQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVT 1952
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 2621 bits (6793), Expect = 0.0
Identities = 1337/1924 (69%), Positives = 1532/1924 (79%), Gaps = 101/1924 (5%)
Query: 18 LRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR------ 71
L S PP + P++D L + K+K+ PKK ++ K K +++KK
Sbjct: 24 LNNSLPPPHPENEEDPEED---LSETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCR 80
Query: 72 ---DSE---EEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG-- 123
DS EF E +E +S+S GS+Y PG+K+++K KKEKK+K ++K E
Sbjct: 81 QLGDSSGEGPEFVEEEEEVALRSDSEGSDYT--PGKKKKKKLGPKKEKKSKSKRKEEEEE 138
Query: 124 -DGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPM 182
D E KSSA LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +
Sbjct: 139 EDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAV 198
Query: 183 SKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPAL 242
SKMM +LGAKWREFS NNPFKGS+ A AAAAAAA AV E + A A
Sbjct: 199 SKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA----------- 247
Query: 243 PPPPAADIQPPPIRRAKTKEGKGPGHKRRSK-SPRVPDGRKKLRGKKMAPLKIKLGLLGG 301
PPPP ++ PIR+AKTKEGKGP +R+ K SPRVPD KK + KK+APLKIKLG G
Sbjct: 248 PPPPPVEV---PIRKAKTKEGKGPNARRKPKGSPRVPDA-KKPKPKKVAPLKIKLGGFGS 303
Query: 302 KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG 361
KRK+ S D ESD D S++S S R+ + ++ KKKK
Sbjct: 304 KRKRSSSEDDDLDV-------ESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKK--- 353
Query: 362 CPAVAGEEEV---DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKW 418
GEEEV DGYETDHQDYCEVCQQGGEIILCDTCPRAYH+VCLDP++++APEGKW
Sbjct: 354 ----KGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 409
Query: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGE--KEEEDDHMEYCRVCKDGGELLCCDACIS 476
SCPHCEKEG+QWEAKE+ E EE EE G +EE+D HME+CRVCKDGGELLCCD C S
Sbjct: 410 SCPHCEKEGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPS 469
Query: 477 SYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDV 536
SYHIHCLNPPLP+IPNGEWLCPRCTCP LKG+VQKIL W+WG+PP P P+ D +P+
Sbjct: 470 SYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNT 529
Query: 537 PPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYG 596
P P+PL+GR ER+FFVKW G+SYWHCSW ELQLE+ VM+RNYQRKNDMDEPP D+G
Sbjct: 530 PSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFG 589
Query: 597 SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDL 656
E+ KS KRK KDP +AEMEE++YR+GIKPEWM +HRI+NHSVDKKG+ HYL+KWRDL
Sbjct: 590 GDEE--KSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDL 647
Query: 657 PYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN 716
PYDQ++WE +++ I +Y+ KQSYW HREL+ GE+ +P K KK K + + PP +PT
Sbjct: 648 PYDQASWESEDVEIQDYDLFKQSYWNHRELMRGEE-GRPGKKLKKVKLRKLERPPETPTV 706
Query: 717 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776
DPTVKYE QP ++ ATGGTLH YQ+EGLNWLRFSWAQGTDTILADEMGLGKT+QT VFLY
Sbjct: 707 DPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLY 766
Query: 777 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836
SLYKEGH+KGPFLVSAPLSTIINWEREF+MWAP YVVTY GDKDSRAIIRENEFSFEDN
Sbjct: 767 SLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDN 826
Query: 837 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896
AI+GGKKA +MK+EA VKFHVLLTSYELITID A LGSI WACL+VDEAHRLKNNQSKFF
Sbjct: 827 AIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFF 886
Query: 897 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKL 956
RVLNGY + HKLLLTGTPLQNNLEELFHLLNFLTPERF+NLEGFLEEFADI+KEDQIKKL
Sbjct: 887 RVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL 946
Query: 957 HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV 1016
HD+LGPHMLRRLKADVFKNMP+KTELIVRVELSPMQKKYYKYILTRNFEALN+RGGGNQV
Sbjct: 947 HDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV 1006
Query: 1017 SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQG 1076
SLLN++MDLKKCCNHPYLFPVAAME+PK+P+G Y+G ALI++SGKL+LLQKML+ LKE G
Sbjct: 1007 SLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGG 1066
Query: 1077 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLST 1136
HRVLIFSQMTKMLDLLEDFL++EGYKYERIDGGITG +RQEAIDRFNAPGAQQFCFLLST
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 1137 RAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQ 1196
RAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KVMIYRFVTRASVEERITQ
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 1197 VAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDE---NEGENKE-EDSSV 1252
VAK+KMMLTHLVVRPGLGSK GSMSKQELDDILKFGTEELFKDE G+NKE EDSSV
Sbjct: 1187 VAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSV 1246
Query: 1253 IHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREED--KIEEIEREIIKQE 1310
IHYD++AI RLLDRNQD TEDT++Q MNEYLSSFKVAQYVVREE+ + EE+EREIIKQE
Sbjct: 1247 IHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQE 1306
Query: 1311 ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEY 1363
E+VDPDYWEKLLRHHYEQQQEDLARNLGKGKR+RKQVNYND +QED+ DNQS+Y
Sbjct: 1307 ESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDY 1366
Query: 1364 SVGSEEEDEDFDERPEG-RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
SV SEE DEDFDER E RR S++ LRN+KDKPLPPLLARVGGNIEVLGFN RQRKAFLN
Sbjct: 1367 SVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLN 1426
Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREG 1482
A+MR+GMPPQDAFTTQWLVRDLRGK+EKEFKAYVSLFMRHLCEPGADG+ETFADGVPREG
Sbjct: 1427 AIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREG 1486
Query: 1483 LSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTP 1542
LSRQ VLTRIGVMSL++KKVQEFEH+NGRWSMPEL A+ + + + S P SP TP
Sbjct: 1487 LSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL-----AEVEENKKMSQPGSPSPKTP 1541
Query: 1543 EASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKME-TEADAPS 1601
S + PA P+E G I KEE + EK K++ +E T+A AP+
Sbjct: 1542 TPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPA 1601
Query: 1602 --------PAPSLGERLEPRKI------PLEDEVPGVPGEMEPE--------PGYRGDRE 1639
P E++E ++ P+E E G + E P D+E
Sbjct: 1602 SEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADVEKVEEKSAIDLTPIVVEDKE 1661
Query: 1640 KSEDVKGDRELRPGPRDEPRS-NGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAIS 1698
+ ++ + +E+ + P+ N +++K K RFMFNIADGGFTELH+LWQNEERAA
Sbjct: 1662 EKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATV 1721
Query: 1699 SGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKF 1758
+ K EIWHRRHDYWLLAGI+ HGYARWQDIQND ++AI+NEPFK E N+GNFLE+KNKF
Sbjct: 1722 TKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKF 1781
Query: 1759 LARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLA 1818
LARRFKLLEQALVIEEQLRRAAYLN+S++P+HP+MAL+ RFAE ECLAESHQHLSKES+A
Sbjct: 1782 LARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESHQHLSKESMA 1841
Query: 1819 GNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGT 1878
GNKPANAVLHKVL QLEELLSDMKADVTRLPAT++RIPP+A RLQMSER+ILSRLA++
Sbjct: 1842 GNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLANRAP 1901
Query: 1879 EPHP 1882
EP P
Sbjct: 1902 EPTP 1905
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 577 bits (1487), Expect = e-164
Identities = 374/1000 (37%), Positives = 556/1000 (55%), Gaps = 107/1000 (10%)
Query: 547 EREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKNDMDE-------PPPLDYG 596
E ++ +KW G SY H +W E L+ + L N+++K D + P ++Y
Sbjct: 304 EIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYF 363
Query: 597 SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKK----GNYHYLVK 652
+ + + S+ K Y +E +K T+ + + +K YL K
Sbjct: 364 NCQQELASELNK----QYQIVERV---IAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCK 416
Query: 653 WRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPS 712
W LPY + +WE++ + +++ S+ H P + K K++
Sbjct: 417 WMGLPYSECSWEDEALIGKKFQNCIDSF--HSRNNSKTIPTRECKALKQRPRF------- 467
Query: 713 SPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTI 772
V + QP ++ L YQLEGLNWL SW + ILADEMGLGKTIQTI
Sbjct: 468 -------VALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTI 520
Query: 773 VFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS 832
FL L+ + GPFL+ PLST+ +W+REF++WAP+ VV Y GD SR IRE E+
Sbjct: 521 SFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWI 580
Query: 833 FEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQ 892
++KF+ L+T+YE++ D+ LGSI WA L VDEAHRLKN+
Sbjct: 581 HSQTK--------------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDD 626
Query: 893 SKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ 952
S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F E F E+ +E+
Sbjct: 627 SLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENG 685
Query: 953 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG 1012
+ LH +L P +LRR+K DV K++PAK E I+RVE+S +QK+YYK+ILTRN++AL
Sbjct: 686 YQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTR 745
Query: 1013 GNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
G+ LNI+M+LKKCCNH YL + E + +G +LI+SSGKL+LL K+L +L
Sbjct: 746 GSTSGFLNIVMELKKCCNHCYL--IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRL 803
Query: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 1132
+E+G+RVLIFSQM +MLD+L ++L + Y ++R+DG I G +R++A+D FNA G++ FCF
Sbjct: 804 RERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863
Query: 1133 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 1192
LLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ +V IYR VT+ +VEE
Sbjct: 864 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923
Query: 1193 RITQVAKRKMMLTHLVV-------RPGLGSKAG-----SMSKQELDDILKFGTEELFKDE 1240
I + AK+KM+L HLV+ R L + +G +K+EL ILKFG E+LFK E
Sbjct: 924 EIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK-E 982
Query: 1241 NEGENKEEDSSVIHYDNEAIARLLD--RNQDATEDTDVQNMNEYLSSFKVAQYVVREEDK 1298
EGE E D + I RL + N+ +T TD E LS FKVA + E++
Sbjct: 983 LEGEESEPQ----EMDIDEILRLAETRENEVSTSATD-----ELLSQFKVANFATMEDE- 1032
Query: 1299 IEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA-AQEDQ 1357
EE+E K + + P+ K + Q++ + L + + K+ ND+ + +
Sbjct: 1033 -EELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTES 1091
Query: 1358 DNQSEYSVGSEEEDEDFDERPEGRRQSK-RQLRNEKDKPLPPLLARVGGNIEVLGFNTRQ 1416
Q++ S SE E ED D+ + +R+ + R +R + V GF +
Sbjct: 1092 KRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDL----------------VEGFTDAE 1135
Query: 1417 RKAFLNAVMRWGMP-------PQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGAD 1469
+ F+ A ++G+P +DA V DL+ E + VS + + +
Sbjct: 1136 IRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKEN 1195
Query: 1470 GSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHIN 1509
SE G R G + + ++ V S+++ + +EFE ++
Sbjct: 1196 ASEGKGPG-KRRGPTIKISGVQVNVKSIIQHE-EEFEMLH 1233
Score = 43.1 bits (100), Expect = 0.003
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 48 KKRKRGPKKQKENKPGKPRKR--------KKRDSEEEFGSERDEYREKS---------ES 90
K +KR P+ +KENK + ++ + D+ E G +D+ EKS E+
Sbjct: 1338 KLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKEN 1397
Query: 91 GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHV 150
++ RK + +E+K+ K K+ K GD ++S + +T G E V
Sbjct: 1398 KENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIG 1457
Query: 151 FSEEDYHTLTNYKAFSQFMRPL 172
E+D + + MRP+
Sbjct: 1458 EDEDDDLDQETFSICKERMRPV 1479
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 519 EPPVAVPAPQQADGNPDVPP-PRPLQGRSEREFFVKWVGLSYWHCSWAKE 567
E +AV + G D P R +E E+ KW+GL Y CSW E
Sbjct: 381 ERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDE 430
Score = 33.1 bits (74), Expect = 2.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1706 WHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANK---GNFLEMKNKFLARR 1762
W D LL GI HGY W+ I+ D + + ++ E +K G L+ + +L
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317
Query: 1763 FKLLEQAL 1770
KLL + L
Sbjct: 1318 LKLLRKGL 1325
Score = 31.6 bits (70), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 644 KGNYHYLVKWRDLPYDQSTWEEDE 667
+G YL+KW+ Y STWE +E
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEE 325
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 566 bits (1458), Expect = e-161
Identities = 358/927 (38%), Positives = 527/927 (56%), Gaps = 105/927 (11%)
Query: 529 QADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKN 585
+ADG+P+ + + E ++ +KW G S+ H +W E L+ + + NY++K+
Sbjct: 298 EADGDPNAGFEKNKEP-GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 356
Query: 586 DMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRF------GIKPEWMTVHRIINH 639
+ KR +K+ ++E YY + ++ V RII H
Sbjct: 357 -----------------QETKRWLKNASPEDVE--YYNCQQELTDDLHKQYQIVERIIAH 397
Query: 640 SVDKK--GNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRK 697
S K G Y KW+ LPY + +WE+ + +++ Y+ + P + K
Sbjct: 398 SNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQ--SKTTPFKDCK 455
Query: 698 YKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGT-LHMYQLEGLNWLRFSWAQGTD 756
K++ V + QP +I G L YQL GLNWL SW +G
Sbjct: 456 VLKQRPRF--------------VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNS 501
Query: 757 TILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTY 816
ILADEMGLGKTIQTI FL L+ E GPFL+ PLST+ +W+RE Q WA + V Y
Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVY 561
Query: 817 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 876
GD +SR +IR +E++ ++KF++LLT+YE++ D+A LG +
Sbjct: 562 LGDINSRNMIRTHEWTHHQTK--------------RLKFNILLTTYEILLKDKAFLGGLN 607
Query: 877 WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNN 936
WA + VDEAHRLKN+ S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F++
Sbjct: 608 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSS 667
Query: 937 LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY 996
E F EE +E LH L P +LRR+K DV K++PAK E I+R+E+S +QK+YY
Sbjct: 668 WEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYY 726
Query: 997 KYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALI 1056
K+ILTRN++AL+ G+ LNIMM+LKKCCNH YL + ++ + + LI
Sbjct: 727 KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYL--IKPPDNNEFYNKQEALQHLI 784
Query: 1057 KSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQ 1116
+SSGKL+LL K+L +L+E+G+RVLIFSQM +MLD+L ++L Y + ++R+DG I G LR+
Sbjct: 785 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK 844
Query: 1117 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQA 1176
+A+D FNA G++ FCFLLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ
Sbjct: 845 QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK 904
Query: 1177 NKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR------------PGLGSKAGSMSKQE 1224
+V IYR VT+ SVEE I + AK+KM+L HLV++ S + +K+E
Sbjct: 905 KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEE 964
Query: 1225 LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLS 1284
L ILKFG EELFK E EGE +E D + I + + +++ E + +E LS
Sbjct: 965 LSAILKFGAEELFK-EPEGEEQEPQ----EMDIDEILKRAETHEN--EPGPLTVGDELLS 1017
Query: 1285 SFKVAQYVVREEDKIE-EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
FKVA + +ED IE E ER EE + D +L +++ E++ L + +
Sbjct: 1018 QFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM-LPRMRNC 1076
Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
KQ+++N E + ++S GS D D EG+R KR + + +P
Sbjct: 1077 AKQISFN--GSEGRRSRSRRYSGS-----DSDSISEGKRPKKR----GRPRTIP------ 1119
Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMP 1430
+ GF+ + + F+ + ++G P
Sbjct: 1120 --RENIKGFSDAEIRRFIKSYKKFGGP 1144
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 526 bits (1354), Expect = e-148
Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)
Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
EF+VK+ SY HC WA LE + + + K ++
Sbjct: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863
Query: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 664
++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE
Sbjct: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919
Query: 665 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 720
D+ I E+E+ +M +P R + P D
Sbjct: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954
Query: 721 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 780
K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y
Sbjct: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012
Query: 781 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 837
+G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D
Sbjct: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070
Query: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K
Sbjct: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119
Query: 898 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 957
L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL
Sbjct: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179
Query: 958 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1016
+L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N
Sbjct: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239
Query: 1017 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1069
+LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L
Sbjct: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299
Query: 1070 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1129
KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359
Query: 1130 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1189
F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S
Sbjct: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419
Query: 1190 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1244
E + A K+ L V++ G + + +SK+E++D+L+ G DE +
Sbjct: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479
Query: 1245 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1302
+K EED I LL R T +++ + S+F A +V +
Sbjct: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525
Query: 1303 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1356
+ DP++W+K + + + D+ G+ RVRKQ A +ED
Sbjct: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
Query: 1357 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1383
+ + S+ SEE+ RP+ + Q
Sbjct: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599
Score = 37.0 bits (84), Expect = 0.19
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 1526 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1583
K+ S+A K E P T K P P P EK TP K ++ +KP
Sbjct: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703
Query: 1584 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGV----PGEMEPEPGYRGDR 1638
+ S + +K+ S L + P P EDE PGV Y D
Sbjct: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDL 763
Query: 1639 E-KSEDVKGDRELRPGPRDEPRSNGRREEK 1667
E K D + D G RD P + + E++
Sbjct: 764 EFKISDEEADDADAAG-RDSPSNTSQSEQQ 792
Score = 32.7 bits (73), Expect = 3.6
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 254 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 310
P + KE K P + K+P++P K+ + K P K K +K + +
Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711
Query: 311 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 370
+ ++G +E SDLD S D +K + R ++K+ +EE
Sbjct: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771
Query: 371 VDGYETDHQD 380
D + +D
Sbjct: 772 ADDADAAGRD 781
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 514 bits (1325), Expect = e-145
Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)
Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
EFFVK+ SY HC WA QLE + + + K M
Sbjct: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426
Query: 609 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 663
+ H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW
Sbjct: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
Query: 664 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 722
E +++++ + E K+ RH EL + +P+ KK EL + Y
Sbjct: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526
Query: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G
Sbjct: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578
Query: 783 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842
GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ +
Sbjct: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636
Query: 843 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 902
A+ KF L+T++E+I D L I W C+++DEAHRLKN K L
Sbjct: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688
Query: 903 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 962
++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748
Query: 963 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1020
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN
Sbjct: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807
Query: 1021 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK
Sbjct: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867
Query: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1133
GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927
Query: 1134 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1193
L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987
Query: 1194 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1246
+ A K+ L V+ R G + SK+E++D+L+ G +E++ +K
Sbjct: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047
Query: 1247 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
EED I LL R T +++ + S+F A +V E ++
Sbjct: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1358
DP++W+K + + DL +L K RVRKQ + ++D
Sbjct: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135
Query: 1359 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ S+ E ED DERP RR + D
Sbjct: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 514 bits (1325), Expect = e-145
Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)
Query: 550 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 609
F+VK+ SY HC WA +LE + + + +N + +
Sbjct: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361
Query: 610 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 664
+ E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE
Sbjct: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413
Query: 665 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 724
+E DPA+ ++++ + L P +D K E
Sbjct: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451
Query: 725 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784
+ L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G
Sbjct: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508
Query: 785 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 841
GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G
Sbjct: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566
Query: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
KFHV++T++E+I D L I W+C+++DEAHRLKN K L
Sbjct: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616
Query: 902 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 961
++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L
Sbjct: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676
Query: 962 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1020
P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N
Sbjct: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
Query: 1021 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K
Sbjct: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F
Sbjct: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914
Query: 1192 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1247
+ A K+ L V+ R G + +SK E++D+L+ G DE + +K
Sbjct: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973
Query: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1307
+ E I ++L R T +Q+ + S+F A +V ++
Sbjct: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018
Query: 1308 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1362
DP++W+K L + ++E L + RVRKQ + ++ +ED+ E
Sbjct: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067
Query: 1363 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
+S E D D DERP R+L ++ + L RV N+ + G+ R + +
Sbjct: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118
Query: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1470
+W + +D + + R L K +K + F+ L P DG
Sbjct: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165
Score = 33.1 bits (74), Expect = 2.8
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 100
KRKR PK+ KE + K K+ K E + + R+ E+ G++ +
Sbjct: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178
Query: 101 RKRRRKHREKKEKKTKRRKKGE 122
K R+ +E+ +++KKG+
Sbjct: 179 TKSRKASKEQGPTPVEKKKKGK 200
Score = 31.6 bits (70), Expect = 8.0
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 108
++ + PKK KE+K K + K+ + S E +EK S T + + +
Sbjct: 131 RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGP 190
Query: 109 EKKEKKTKRRKKGE 122
EKK K ++K E
Sbjct: 191 TPVEKKKKGKRKSE 204
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 505 bits (1300), Expect = e-142
Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)
Query: 549 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 608
EFFVK+ SY HC WA E QL + + Q+K + R+
Sbjct: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753
Query: 609 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 662
+ H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST
Sbjct: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809
Query: 663 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 719
WE ++++++ + EE +Q + P R D PPS+ D +
Sbjct: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851
Query: 720 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 779
Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY +
Sbjct: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Query: 780 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839
G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ +
Sbjct: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961
Query: 840 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899
+ A++ F ++T++E+I L +I W C+++DEAHRLKN K L
Sbjct: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
Query: 900 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 959
++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1018
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
Query: 1019 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K
Sbjct: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
+K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F
Sbjct: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E
Sbjct: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1245
+ A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG
Sbjct: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
Query: 1246 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1304
EED I LL R + T +++ + S+F A +V ++
Sbjct: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418
Query: 1305 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1362
DP++W+K + + RN + R+RKQ A +++ S
Sbjct: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468
Query: 1363 YSVGSEEEDEDFDERPEGRRQSKR 1386
E + + DE+P+ RR R
Sbjct: 1469 ------EAESEGDEKPKLRRPCDR 1486
Score = 32.3 bits (72), Expect = 4.7
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 1516 ELMPDPSADSKRSSRASSPTKTSPTTP-------EASATNSPCTSKPATPAPSEKGEGIR 1568
E D +DS+RSS +S + +S ++ +S+++S C+S ++ + S
Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188
Query: 1569 TPLEKEEAENQEEKPEK 1585
+ EE+++ EE+ +K
Sbjct: 2189 SSSSSEESDSDEEEAQK 2205
Score = 31.6 bits (70), Expect = 8.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1215 SKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDT 1274
S + S S +EE DE E + +E + + YD E++A L QD T+D+
Sbjct: 2175 SSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVAS-LSTTQDETQDS 2233
Query: 1275 DVQN 1278
N
Sbjct: 2234 FQMN 2237
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 444 bits (1141), Expect = e-124
Identities = 275/798 (34%), Positives = 436/798 (54%), Gaps = 65/798 (8%)
Query: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
Query: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
Query: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
Query: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
Query: 1101 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNP 1160
Y+Y R+DG R+EAI+ FNAP + +F F+LSTRAGGLGINLA+AD VI++DSDWNP
Sbjct: 527 YEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 586
Query: 1161 HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG 1218
D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V++ G + ++
Sbjct: 587 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 646
Query: 1219 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1278
++K+E+ +++ G +F + E+ ++++ + A + +R Q E +
Sbjct: 647 KLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGE----SS 702
Query: 1279 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR--- 1335
+ + + + Y ED E++ + E ++P E+ + + + R
Sbjct: 703 LRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSE 759
Query: 1336 -NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDEDFDERPEGRRQS 1384
+ K R KQ N D E + ++G + + D +R+
Sbjct: 760 PKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREE 819
Query: 1385 KRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGMPPQDAFTTQWLV 1441
++++ + +PL P + GF R F+ A ++G D +
Sbjct: 820 QKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN-----IA 872
Query: 1442 RDLRGKTEKEFKAYVSLF 1459
R++ GK+ +E Y ++F
Sbjct: 873 REVEGKSPEEVMEYSAVF 890
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 435 bits (1118), Expect = e-121
Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)
Query: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
Query: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
Query: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
Query: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
Query: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
Query: 1101 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1148
Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Query: 1149 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1208
D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V
Sbjct: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
Query: 1209 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1266
++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R
Sbjct: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
Query: 1267 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1326
Q E ++ + + + Y ED E++ + E ++P E+ +
Sbjct: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759
Query: 1327 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1372
+ + R + K R KQ N D E + ++G + +
Sbjct: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819
Query: 1373 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1429
D +R+ ++++ + +PL P + GF R F+ A ++G
Sbjct: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877
Query: 1430 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1459
D + R++ GK+ +E Y ++F
Sbjct: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 422 bits (1085), Expect = e-117
Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)
Query: 698 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 754
Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G
Sbjct: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198
Query: 755 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 814
+ ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V
Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258
Query: 815 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 874
GDK+ RA +F + + G+ + V +TSYE++ +++
Sbjct: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299
Query: 875 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 935 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 991
N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 992 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1051
Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + +
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477
Query: 1052 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1111
L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG
Sbjct: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534
Query: 1112 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1171
RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH
Sbjct: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594
Query: 1172 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1229
RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++
Sbjct: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Query: 1230 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1286
+ G +F + E E +ED I +L+R T + MNE LS
Sbjct: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698
Query: 1287 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1336
+ + + E + E E ++++ ++P E+ + + + R
Sbjct: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758
Query: 1337 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1388
K R KQ N D + + + E + PE + Q + QL
Sbjct: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818
Query: 1389 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1445
+ ++ + L + GF N R F+ A +WG + + R++
Sbjct: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873
Query: 1446 GKTEKEFKAYVSLF 1459
GKT +E Y ++F
Sbjct: 874 GKTPEEVIEYSAVF 887
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 410 bits (1053), Expect = e-114
Identities = 257/667 (38%), Positives = 376/667 (56%), Gaps = 47/667 (7%)
Query: 732 TGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVS 791
TG L YQLEG+NWL + IL DEMGLGKT QTI L + +GPFL+
Sbjct: 42 TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLIL 101
Query: 792 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851
PLS + NW+ E Q +AP VTY GDK+ RA ++++ +K+E+
Sbjct: 102 CPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------------LKQES 144
Query: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
+FHVLLT+YE+ D + L S W+ LVVDEAHRLKN S + L+ + + LLLT
Sbjct: 145 --RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLT 202
Query: 912 GTPLQNNLEELFHLLNFLTPERFNNLE--GFLEEFADISKEDQ-IKKLHDLLGPHMLRRL 968
GTP+QN+L+EL+ LL+F+ P+ F+ E F++ + DI KE + +LH LL P +LRR+
Sbjct: 203 GTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV 262
Query: 969 KADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKC 1028
KA+V +P KTE+++ +S +QKKYYK IL ++ +A + +V L NI+ L+KC
Sbjct: 263 KAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETA-KKVKLQNILSQLRKC 321
Query: 1029 CNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKM 1088
+HPYLF E ++ G L ++SGKL LL K+L L GHRVL+FSQMT+M
Sbjct: 322 VDHPYLFDGVEPEPFEV------GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQM 375
Query: 1089 LDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ-FCFLLSTRAGGLGINLAT 1147
LD+L+D++DY GY YER+DG + G R AI F G Q F FLLSTRAGG+G+NL
Sbjct: 376 LDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQPIFVFLLSTRAGGVGMNLTA 432
Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
ADTVI DSD+NP ND+QA +RAHRIGQ V + R + R +VEE + + A K+ LT++
Sbjct: 433 ADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNM 492
Query: 1208 VVRPG---LGS-KAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVI--HYDNEAIA 1261
++ G LG+ K + + +L +ILKFG ++L E ++ + S++ D + ++
Sbjct: 493 IIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVS 552
Query: 1262 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1321
L + + D + + YL K +ED R+ +Q N+ EK
Sbjct: 553 DALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKED------RKSFEQLVNLQKTLLEKA 606
Query: 1322 LRHHYEQQQED--LARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPE 1379
+ + + L L +G RK+V + ++ Q + E + E+ + E
Sbjct: 607 SQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKE 666
Query: 1380 GRRQSKR 1386
K+
Sbjct: 667 EAEHKKK 673
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 405 bits (1042), Expect = e-112
Identities = 307/960 (31%), Positives = 466/960 (48%), Gaps = 123/960 (12%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362
Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412
Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1466
Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1467 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1521
Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606
S TS +R +EKE+ EE E+ E E+E+ + L
Sbjct: 1522 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1568
Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREE 1666
G RK +D + G G P G R S+D + + +E RS EE
Sbjct: 1569 G-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSDDDSEEEQ------EEDRSGSGSEE 1615
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 404 bits (1037), Expect = e-112
Identities = 307/960 (31%), Positives = 464/960 (48%), Gaps = 126/960 (13%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358
Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409
Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1463
Query: 1487 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1546
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1464 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1518
Query: 1547 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1606
S TS +R +EKE+ EE E+ E E+E+ + L
Sbjct: 1519 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1565
Query: 1607 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREE 1666
G RK +D + G G P G R S+D + + +E RS EE
Sbjct: 1566 G-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSDDDSEEEQ------EEDRSGSGSEE 1612
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 402 bits (1033), Expect = e-111
Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)
Query: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
Query: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
Query: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
Query: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
Query: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
Query: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
Query: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456
++ A R G PP + + K K+ A +
Sbjct: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
Query: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516
+ + G SE F R+ L L R V KK++E + S+ +
Sbjct: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
Query: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576
L D + + + S ++ S S A E+ E E+EE
Sbjct: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
Query: 1577 ENQEEKPEKNSRIGEKMETEAD 1598
E + E K+ ++ K+ + D
Sbjct: 1507 EEESESEAKSVKVKIKLNKKDD 1528
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 402 bits (1032), Expect = e-111
Identities = 307/961 (31%), Positives = 466/961 (48%), Gaps = 124/961 (12%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362
Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412
Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1466
Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1467 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1521
Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605
S TS +R +EKE+ EE E+ E E+E+ +
Sbjct: 1522 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1568
Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRRE 1665
LG RK +D + G G P G R S+D + + +E RS E
Sbjct: 1569 LG-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSDDDSEEEQ------EEDRSGSGSE 1615
Query: 1666 E 1666
E
Sbjct: 1616 E 1616
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 401 bits (1030), Expect = e-111
Identities = 269/778 (34%), Positives = 398/778 (51%), Gaps = 98/778 (12%)
Query: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
Query: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
Query: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
Query: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
Query: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
Query: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
Query: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
Query: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Query: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
Query: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
Query: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
Query: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDK 1394
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK 1354
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 400 bits (1027), Expect = e-111
Identities = 307/961 (31%), Positives = 464/961 (48%), Gaps = 127/961 (13%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1249
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1250 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1306
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1307 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1366
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358
Query: 1367 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1426
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409
Query: 1427 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1485
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1463
Query: 1486 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1545
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1464 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1518
Query: 1546 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1605
S TS +R +EKE+ EE E+ E E+E+ +
Sbjct: 1519 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1565
Query: 1606 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRRE 1665
LG RK +D + G G P G R S+D + + +E RS E
Sbjct: 1566 LG-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSDDDSEEEQ------EEDRSGSGSE 1612
Query: 1666 E 1666
E
Sbjct: 1613 E 1613
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 392 bits (1006), Expect = e-108
Identities = 308/984 (31%), Positives = 465/984 (47%), Gaps = 140/984 (14%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
G + +R + + G PP + + K+ K V +++
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSE 1642
E+ E E+E+ + LG RK +D + G G P G R S+
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSD 1628
Query: 1643 DVKGDRELRPGPRDEPRSNGRREE 1666
D + + +E RS EE
Sbjct: 1629 DDSEEEQ------EEDRSGSGSEE 1646
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 392 bits (1006), Expect = e-108
Identities = 308/984 (31%), Positives = 465/984 (47%), Gaps = 140/984 (14%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
Query: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
G + +R + + G PP + + K+ K V +++
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
Query: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
Query: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
Query: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSE 1642
E+ E E+E+ + LG RK +D + G G P G R S+
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSD 1628
Query: 1643 DVKGDRELRPGPRDEPRSNGRREE 1666
D + + +E RS EE
Sbjct: 1629 DDSEEEQ------EEDRSGSGSEE 1646
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 387 bits (994), Expect = e-107
Identities = 311/1009 (30%), Positives = 468/1009 (46%), Gaps = 158/1009 (15%)
Query: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1344 RKQVNYNDAAQEDQ-----------DNQSEYSVGSE--------------EEDEDFDERP 1378
RK+V+Y+D+ E Q D S + G + E+ +E
Sbjct: 1374 RKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIE 1433
Query: 1379 EGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQ 1438
E RQ K + ++D + G + +R + + G PP + +
Sbjct: 1434 EEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN 1486
Query: 1439 WLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSRQQVLTRIGVMSL 1497
K+ K V +++ G SE F R+ L L R V
Sbjct: 1487 ------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF- 1539
Query: 1498 VKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPAT 1557
KK++E + S+ +L D + + + + S ++ S TS
Sbjct: 1540 --KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIVLQSVFTS---- 1591
Query: 1558 PAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPL 1617
+R +EKE+ EE E+ E E+E+ + LG RK
Sbjct: 1592 ---------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLG-----RKEKA 1637
Query: 1618 EDEVPGVPGEMEPEPGYRGDREKSEDVKGDRELRPGPRDEPRSNGRREE 1666
+D + G G P G R S+D + + +E RS EE
Sbjct: 1638 QDRLKG--GRRRPSRGSRAKPVVSDDDSEEEQ------EEDRSGSGSEE 1678
Score = 38.5 bits (88), Expect = 0.065
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1394 KPLP 1397
P P
Sbjct: 690 IPDP 693
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 290 bits (742), Expect = 1e-77
Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)
Query: 711 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 770
P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q
Sbjct: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
Query: 771 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N
Sbjct: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316
Query: 831 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
+ KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K
Sbjct: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
Query: 890 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 949
N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419
Query: 950 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ +
Sbjct: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479
Query: 996 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1034
Y I+ R + +R N + + +L+K + P +
Sbjct: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Query: 1035 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1074
A+ +P E +K +MLL+K +L
Sbjct: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596
Query: 1075 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1117
+ LI +M ++M +L+ +DY + + R+DG ++ + R++
Sbjct: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656
Query: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
+ FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ
Sbjct: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715
Query: 1178 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1234
V++YR VT +++++I + A K L L++ G ++G ++SK LD K E
Sbjct: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773
Query: 1235 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1290
L + E E K VI ++ + LLDR+ + + E + FK+ +
Sbjct: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 271 bits (692), Expect = 6e-72
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)
Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
+MM L+K NHP L P +P L E
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 271 bits (692), Expect = 6e-72
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)
Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
+MM L+K NHP L P +P L E
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 268 bits (684), Expect = 5e-71
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)
Query: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
Query: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
+MM L+K NHP L P +P L E
Sbjct: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
Query: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
Query: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
Query: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 261 bits (666), Expect = 6e-69
Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)
Query: 699 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 758
K+K+ +L+ D S D K P F+ L YQ G+ WL Q I
Sbjct: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529
Query: 759 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 808
L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W
Sbjct: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589
Query: 809 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 868
P F V AI+ E K K+ R+ +L+TSY I +
Sbjct: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631
Query: 869 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 928
Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F
Sbjct: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691
Query: 929 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 973
+ P + L F+E+F+ + Q+K L D + P++LRR+K+DV
Sbjct: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751
Query: 974 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1029
++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C
Sbjct: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806
Query: 1030 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087
NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ +
Sbjct: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866
Query: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL
Sbjct: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925
Query: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+
Sbjct: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985
Query: 1208 VVR 1210
V++
Sbjct: 986 VLK 988
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 219 bits (557), Expect = 3e-56
Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)
Query: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 783
L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G
Sbjct: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
Query: 784 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
K FL+ APLS + NW+ E W
Sbjct: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231
Query: 831 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 890
F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN
Sbjct: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290
Query: 891 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 950
+++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D +
Sbjct: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350
Query: 951 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
Q +++L + LRR K + +P K + +V L+ QK
Sbjct: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410
Query: 996 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1032
Y+ +L L NS G + L+ + L+K NH
Sbjct: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470
Query: 1033 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
L A+ K A+E + K SGK+ +LQ++L
Sbjct: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530
Query: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C
Sbjct: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590
Query: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE
Sbjct: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
Query: 1192 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1245
E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G
Sbjct: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704
Query: 1246 KEED 1249
+D
Sbjct: 705 LTKD 708
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,856,985
Number of Sequences: 37866
Number of extensions: 5139861
Number of successful extensions: 59350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 927
Number of HSP's that attempted gapping in prelim test: 35201
Number of HSP's gapped (non-prelim): 19800
length of query: 1966
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1849
effective length of database: 13,817,196
effective search space: 25547995404
effective search space used: 25547995404
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.